BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G45640.1

Length=790
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935522 jgi|Araly1|935522|scaffold_403510.1                        717    0.0  


> Ahg935522 jgi|Araly1|935522|scaffold_403510.1
Length=500

 Score =  717 bits (388),  Expect = 0.0
 Identities = 465/501 (93%), Gaps = 9/501 (2%)
 Strand=Plus/Plus

Query  46   GAGAGAAAAAGAG----AGATGGCTGAAGCAGCGAGAAGACAAGGTGGTGGGAGACCATT  101
            |||||||||||||    ||||||||||||||||||||||||| |||||||||||||||||
Sbjct  5    GAGAGAAAAAGAGAAAAAGATGGCTGAAGCAGCGAGAAGACATGGTGGTGGGAGACCATT  64

Query  102  ACCGCCACCTCCGAGAGGCGTTAACCAACAACCTCCTCGCCCTAAACCTGAACCTGTCGA  161
            |||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||
Sbjct  65   ACCGCCACCTCCGAGAGGCGTTAA-C--CAACCTCCTCGCCCTAAACCTGAACCTGTCGA  121

Query  162  TCGTGAAAAGACATGTCCCCTTCTTCTTCGTGTTTTCACCAAGAGTGGTGGTCATCATAC  221
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct  122  TCGTGAAAAGACATGTCCCCTACTTCTTCGTGTTTTCACCAAGAGTGGTGGTCATCATGC  181

Query  222  TAGTGAAGATTATGCTGTGAGAGGCAAAGAACCAAAGGATGAAGTTCAAATCTACACTTG  281
            || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  182  TAATGAAGATTATGCTGTGAGAGGCAAAGAACCAAAAGATGAAGTTCAAATCTACACTTG  241

Query  282  GAAAGATGCCAGTCTTCGCGAGCTAACAGATTTGGTTAAAGAAGTTTCTGTAGCAGCTAG  341
            ||||||||||| ||| |||||| |||| |||||||| |||||||||||||||||||||||
Sbjct  242  GAAAGATGCCACTCTCCGCGAGTTAACCGATTTGGTGAAAGAAGTTTCTGTAGCAGCTAG  301

Query  342  GAGAAGGAATGCTAGATTGTCTTTTGCGTTTGTTTATCCTAACAATAAAGGTGGCTATAA  401
            |||||||||||| ||||||||||||||||||||||||||| ||||  | ||| ||| || 
Sbjct  302  GAGAAGGAATGCAAGATTGTCTTTTGCGTTTGTTTATCCTGACAAGCAGGGTCGCTTTAC  361

Query  402  TGTGAGAGAGGTTGGGGAGACGATGGCTTATCCAAACCGAAAACAACCAGATGACAGTAA  461
            | |||||||||||||| |||| ||| ||| ||| ||||||||||||||||||||||||||
Sbjct  362  TATGAGAGAGGTTGGGCAGACTATGTCTTTTCCGAACCGAAAACAACCAGATGACAGTAA  421

Query  462  AACGCTTTCCGAACTTCCGTTTGAGATTGGAGATTATCTGGATGTGGCAATTTACTAGGA  521
            |||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct  422  AACGCTTTCCGACCTTAGGTTTGAGATTGGAGATTATCTGGATGTGGCAATTTACTAGGA  481

Query  522  GGTTTCTGTTTCTTGTTAAGT  542
            ||||||||||||  |||||||
Sbjct  482  GGTTTCTGTTTC--GTTAAGT  500



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29164031505


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5