BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45650.1
Length=1093
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483701 jgi|Araly1|483701|fgenesh2_kg.4__2761__AT2G45650.1 1382 0.0
> Ahg483701 jgi|Araly1|483701|fgenesh2_kg.4__2761__AT2G45650.1
Length=953
Score = 1382 bits (748), Expect = 0.0
Identities = 823/857 (96%), Gaps = 13/857 (2%)
Strand=Plus/Plus
Query 68 aagaagaaatcagaatcaagagaaggagagagaaagatgggaagagggagagtggagatg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGAAGAAATCAGAATCAAGAGAAGGAGAGAGAAAGATGGGAAGAGGGAGAGTGGAGATG 60
Query 128 aagaggatagagaacaagatTAATAGACAAGTGACCTTCTCAAAAAGAAGAAACGGTTTG 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGAGGATAGAGAACAAGATTAATAGACAAGTGACCTTCTCAAAAAGAAGAAACGGTTTG 120
Query 188 CTGAAGAAAGCTTATGAGCTTTCTGTTCTTTGCGATGCCGAAGTTGCTCTCATCATCTTC 247
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 CTGAAGAAAGCTTATGAGCTTTCTGTTCTTTGTGATGCCGAAGTTGCTCTCATCATCTTC 180
Query 248 TCAAGCCGTGGCAAGCTCTACGAGTTTGGTAGTGTTGGAATTGAAAGCACAATCGAACGG 307
|||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||
Sbjct 181 TCAAGCCGTGGCAAGCTCTACGAGTTCGGTAGTGTTGGAATTGCAAGAACAATCGAACGG 240
Query 308 TATAATCGTTGTTACAACTGCT-CTCTAAGCAATAATAAGCCTGAAGAGACTACACAGAG 366
||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 241 TATAACCGTTGTTACAACTG-TACTCTAAGCAATAATAAGCCTGAAGAGACTACACAGAG 299
Query 367 TTGGTGTCAGGAGGTGACAAAGCTTAAATCCAAATACGAATCTCTTGTTCGTACTAACAG 426
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 300 TTGGTGTCAGGAGGTGACAAAGCTTAAATCCAAATACGAATCTCTTGTTCGCACTAATAG 359
Query 427 GAATTTGCTTGGAGAAGATCTTGGAGAAATGGGTGTGAAGGAACTGCAAGCGCTCGAGAG 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAATTTGCTTGGAGAAGATCTTGGAGAAATGGGTGTGAAGGAACTGCAAGCGCTCGAGAG 419
Query 487 GCAGCTCGAAGCCGCTCTTACCGCGACTCGACAGCGCAAGACACAAGTTATGATGGAAGA 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCAGCTCGAAGCCGCTCTTACCGCGACTCGACAGCGCAAGACACAAGTTATGATGGAAGA 479
Query 547 AATGGAAGACCTTAGGAAAAAGGAGAGGCAACTAGGAGACATAAACAAACAACTCAAGAT 606
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AATGGAAGATCTTAGGAAAAAGGAGAGGCAACTAGGAGACATAAACAAACAACTCAAGAT 539
Query 607 TAAGTTTGAAACGGAAGGCCATGCTTTCAAAACCTTTCAAGACTTATGGGCAAACTCGGC 666
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 TAAGTTTGAGACGGAAGGCCATGCTTTCAAAACGTTTCAAGACTTATGGGCAAACTCGGC 599
Query 667 GGCATCGGTGGCCGGGGATCCAAACAATTCTGAATTTCCGGTAGAGCCTTCTCATCCTAA 726
||| ||| || ||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 600 GGC--CGG-GG------ATCGAAACAATTCTGAATTTCCGGTTGAGCCTTCTCATCCTAT 650
Query 727 TGT-ATTGGATTGCAACACCGAACCCTTTTTACAAATAGGGTTTCAACAACATTACTACG 785
| | | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 651 T-TCACTGGATTGCAACACCGAACCCTTTTTACAAATAGGGTTTCAACAGCATTACTACG 709
Query 786 TGCAAGGTGAAGGGTCTTCGGTATCAAAGAGTAACGTGGCAGGTGAGACTAATTTCGTCC 845
||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 710 TGCAAGGTGAAGGGTCTTCAGTATCAAAGAGCAACGTGGCAGGTGAGACCAATTTCGTCC 769
Query 846 AAGGTTGGGTTCTTTGACTCTCTGTTGATTAGACCACGATGCCACGGTCAGGCCAATTTC 905
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 770 AAGGTTGGGTTCTTTGACTCTCTGTTGATTAGACCACGATCCCACGGTCAGGCCAATTTC 829
Query 906 AGCTCTCTACAGTTGTT 922
|||||||| |||| |||
Sbjct 830 AGCTCTCTGCAGTCGTT 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40715275356
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5