BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45690.1
Length=1532
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483706 jgi|Araly1|483706|fgenesh2_kg.4__2766__AT2G45690.1 2015 0.0
> Ahg483706 jgi|Araly1|483706|fgenesh2_kg.4__2766__AT2G45690.1
Length=1442
Score = 2015 bits (1091), Expect = 0.0
Identities = 1346/1460 (92%), Gaps = 53/1460 (4%)
Strand=Plus/Plus
Query 56 GTGAATGGAATTTTGTTGTTTCCCAATTTCTTCTGAGAAATAGCAAAGTTCAGTTTTGTT 115
|||||||||||||| |||||||||||||||||||| ||||||| ||| |
Sbjct 24 GTGAATGGAATTTTCTTGTTTCCCAATTTCTTCTGTGAAATAG-AAA----A-------- 70
Query 116 TCTCTCTATCTGAAGCTCAATGGAAGCTTATAAGCAATGGGTTTGGAGAAATAGAGAGTA 175
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 TCT-T-TATCTGAAGCTCAATGGAAGCTTATAAGCAATGGGTTTGGAGAAATAGAGAGTA 128
Query 176 TGTACAATCCTTTGGATCCTTTGCCAACGGATTGACATGGCTGCTTCCTGAGAAGTTTTC 235
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 TGTACATTCCTTAGGATCCTTTGCCAACGGATTGACATGGCTGCTTCCTGAGAAGTTTTC 188
Query 236 TGCTTCAGAGATTGGACCAGAAGCAGTAACGGCTTTTTTGGGCATATTCTCAACGATAAA 295
||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 189 TGCTTCAGAGATTGGACCAGAAGCAGTAACGGCTTTTTTGGGCATATTCACAACTATCAA 248
Query 296 TGAACACATAATTGAAAATGCTCCAACACCTCGTGGCCATGTTGGATCTTCCGGGAATGA 355
||||||||| |||||||||||||||||||||||||||| ||||| |||||| ||||||||
Sbjct 249 TGAACACATCATTGAAAATGCTCCAACACCTCGTGGCCTTGTTGAATCTTCTGGGAATGA 308
Query 356 TCCATCCCTTTCTTATCCACTACTCATCGCCATCCTCAAGGATTTGGAAACTGTTGTGGA 415
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 309 TCCATCCCTTTCTTATCCGCTACTCATCGCCATCCTAAAGGATTTGGAAACTGTTGTGGA 368
Query 416 AGTGGCAGCTGAACACTTCTATGGAGACAAAAAATGGAACTACATTATTCTCACTGAAGC 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 AGTGGCAGCTGAACACTTCTATGGAGACAAAAAATGGAACTACATTATTCTCACTGAAGC 428
Query 476 TATGAAGGCTGTCATTAGGTTAGCCTTGTTCCGGAATAGTGGGTATAAGATGCTTCTTCA 535
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 429 TATGAAGGCTGTCATTAGGTTAGCCTTGTTTCGGAATAGTGGGTATAAGATGCTTCTTCA 488
Query 536 AGGAGGGGAAACACCTAATGAGGAGAAAGATTCTAACCAATCCGAGTCGCAAAATAGAGC 595
|||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||
Sbjct 489 AGGAGGGGAAACACCTAACGAGGAGAAAGATTCTGACCAATCCGAGTCGCAAATTAGAGC 548
Query 596 TGGTAATTCGGGTAGAAATCTCGGGCCTCATGGTCTTGGAAACCAAAATCATCATAATCC 655
|||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 549 TGGTAATTTAGGTAGAAATCTCGGGCCTCATAGTCTTGGAAATCAAAATCATCATAATCC 608
Query 656 ATGGAACTTGGAAGGACGGGCGATGTCTGCTTTAAGTTCATTTGGTCAGAATGCAAGAAC 715
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 609 ATGGAACTTGGAAGGACGGGCGATGTCAGCTTTAAGTTCATTTGGTCAGAATGCAAGAAC 668
Query 716 AACAACA---TCTTCTACCCCCGGTTGGTCTCGAAGAATTCAACATCAGCAAGCAGTTAT 772
||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 669 AACAACAACATCTTCTACCTCCGGTTGGTCTCGAAGAATTCAACATCAGCAAGCGGTTAT 728
Query 773 AGAGCCTCCAATGATCAAGGAGAGGCGAAGAACGATGTCCGAGCTACT-TACTGAGAAGG 831
|||||||||||||||||||||||||||||||||| | ||||| ||||| | |||| ||||
Sbjct 729 AGAGCCTCCAATGATCAAGGAGAGGCGAAGAACGCTCTCCGATCTACTAT-CTGAAAAGG 787
Query 832 GTGTTAATGGAGCGTTGTTTGCGATTGGTGAGGTTCTTTACATAACGAGACCGCTCATTT 891
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 788 GTGTTAATGGAGCGTTGTTTGCAATGGGTGAGGTTCTTTACATAACGAGACCGCTCATTT 847
Query 892 ACGTTCTTTTCATCAGAAAATATGGAGTCCGATCTTGGATTCCTTGGGCTATATCGCTTT 951
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 848 ACGTTCTTTTCATCAGAAAATATGGAGTCAGATCTTGGATTCCTTGGGCTATATCGCTTT 907
Query 952 CTGTGGACACACTGGGGATGGGTCTTCTTGCAAATTCGAAGTGGTGGGGAGAGAAGAGCA 1011
||||||||||| |||| |||||| |||||||||||||||| |||||||||||||||||||
Sbjct 908 CTGTGGACACATTGGGAATGGGTATTCTTGCAAATTCGAAATGGTGGGGAGAGAAGAGCA 967
Query 1012 AGCAAGTCCATTTCTCAGGACCTGAAAAGGATGAGCTGAGGAGACGAAAACTGATATGGG 1071
||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||
Sbjct 968 AGCAAGTCCATTTCTCAGGACTTGAAAGGGATGAGCTGAGGAGACGAAAGCTGCTATGGG 1027
Query 1072 CATTGTACCTCATGAGAGATCCATTCTTCACCAAGTACACAAGGCAGAAGCTGGAAAGCT 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 CATTGTACCTCATGAGAGATCCATTCTTCACCAAGTACACAAGGCAGAAGCTGGAAAGCT 1087
Query 1132 CTCAAAAGAAGCTGGAACTAATTCCATTGATCGGATTCCTCACAGAGAAAATTGTGGAGC 1191
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1088 CTCAAAAGAAGCTGGAACCAATTCCATTGATCGGATTCCTCACAGAGAAGATTGTGGAGC 1147
Query 1192 TTTTGGAGGGAGCTCAGTCACGGTACACTTACATATCGGGATCGTGAGGTTAAGCGTTTT 1251
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1148 TTTTGGAGGGAGCTCAGTCACGGTACACTTACATATCGGGATCGTGAGGCTAAGCGTTT- 1206
Query 1252 ACTTATGGTTTATATGCAACGGAAGAATATTGCCATTGTTGGAATGCTTTT-TCAGATCA 1310
||||||||||| || ||||| ||||||||| ||||||||||||||||||| | |||||
Sbjct 1207 ACTTATGGTTTTTACGCAACTGAAGAATATCCCCATTGTTGGAATGCTTTTCT-AGATCT 1265
Query 1311 TCAAAGGCTCCTACAGATTTCTTAGGGAATGGTTTCAGGCTTTTGTTAGAAATTGTGTTT 1370
| ||||||||| | |||| ||| | |||||| |||||||||||||
Sbjct 1266 TTGAAGGCTCCT---G-TTTC--AGG---------C----TTTTGTAAGAAATTGTGTTT 1306
Query 1371 ATTGCAACAGGTAGAGAACATAACCATAGACAGATGTATCTGAAGAGATAAGCTTCTCTA 1430
|||||| | ||||||||||||| || |||||||| |||||| |||||||||||||||
Sbjct 1307 ATTGCA---GTTAGAGAACATAACAATGGACAGATGCATCTGATGAGATAAGCTTCTCTG 1363
Query 1431 TGTCTAAAGAAATGGACCGATACGAATAAAACAAGCATCATTAA---AG-AT--T-AAAT 1483
|||||||||||| | ||| ||||||| ||||||||||||||||| || || | ||||
Sbjct 1364 TGTCTAAAGAAACG-ACCAATACGAACAAAACAAGCATCATTAATGCAGGATGATTAAAT 1422
Query 1484 GGTTTGTAAGAAATACTACA 1503
||||||| ||||||||||||
Sbjct 1423 GGTTTGTCAGAAATACTACA 1442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57363908970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5