BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G45695.1

Length=491
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg322224 jgi|Araly1|322224|fgenesh1_pm.C_scaffold_4002281           344    3e-94


> Ahg322224 jgi|Araly1|322224|fgenesh1_pm.C_scaffold_4002281
Length=282

 Score =  344 bits (186),  Expect = 3e-94
 Identities = 198/204 (97%), Gaps = 0/204 (0%)
 Strand=Plus/Plus

Query  51   ATGCAATTAACTCTTGAATTCGGGGGTGGGTTAGAGCTGCTCTGTGATTCTGAAAAGATT  110
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct  1    ATGCAATTAACTCTTGAATTCGGGGGTGGGTTAGAGTTGCTCTGTGATTCTGAAAAGATC  60

Query  111  CATAAAGTAAACGTTGATTTGCCCAATGGAGCTGACTCTGATGATTTTACCATGAAGCAT  170
            |||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct  61   CATAAAGTTAACGTTGATTTGCCCAATGGAGCTGAATCTGATGATTTCACTATGAAGCAT  120

Query  171  TTGCTTTCATGGGTTCGTACAAATCTGATCAAAGAGAGACCTGAGATGTTCATGAAAGGA  230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TTGCTTTCATGGGTTCGTACAAATCTGATCAAAGAGAGACCTGAGATGTTCATGAAAGGA  180

Query  231  GATACTGTGAGACCTGGGGTTCTT  254
            ||||||||||||||||||||||||
Sbjct  181  GATACTGTGAGACCTGGGGTTCTT  204



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17818660063


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5