BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G45695.1 Length=491 Score E Sequences producing significant alignments: (Bits) Value Ahg322224 jgi|Araly1|322224|fgenesh1_pm.C_scaffold_4002281 344 3e-94 > Ahg322224 jgi|Araly1|322224|fgenesh1_pm.C_scaffold_4002281 Length=282 Score = 344 bits (186), Expect = 3e-94 Identities = 198/204 (97%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 51 ATGCAATTAACTCTTGAATTCGGGGGTGGGTTAGAGCTGCTCTGTGATTCTGAAAAGATT 110 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1 ATGCAATTAACTCTTGAATTCGGGGGTGGGTTAGAGTTGCTCTGTGATTCTGAAAAGATC 60 Query 111 CATAAAGTAAACGTTGATTTGCCCAATGGAGCTGACTCTGATGATTTTACCATGAAGCAT 170 |||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct 61 CATAAAGTTAACGTTGATTTGCCCAATGGAGCTGAATCTGATGATTTCACTATGAAGCAT 120 Query 171 TTGCTTTCATGGGTTCGTACAAATCTGATCAAAGAGAGACCTGAGATGTTCATGAAAGGA 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTGCTTTCATGGGTTCGTACAAATCTGATCAAAGAGAGACCTGAGATGTTCATGAAAGGA 180 Query 231 GATACTGTGAGACCTGGGGTTCTT 254 |||||||||||||||||||||||| Sbjct 181 GATACTGTGAGACCTGGGGTTCTT 204 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17818660063 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5