BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45700.1
Length=2411
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483707 jgi|Araly1|483707|fgenesh2_kg.4__2767__AT2G45700.1 3456 0.0
> Ahg483707 jgi|Araly1|483707|fgenesh2_kg.4__2767__AT2G45700.1
Length=2300
Score = 3456 bits (1871), Expect = 0.0
Identities = 2173/2316 (94%), Gaps = 32/2316 (1%)
Strand=Plus/Plus
Query 23 AATGTCGAACACCGTCGAAGATGACGACGACGACTTCCAGATCCCTCCTTCCTCACAGCT 82
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 AATGTCGAACACCGTCGAAGATGACGATGACGACTTCCAGATCCCTCCTTCCTCACAGCT 60
Query 83 TTCGATTCGAAAACCTCTTCACCCAACCAACGCTAACAACATCTCTCA---CCGCCCTCC 139
||| ||||||| ||||||||| || ||||||||||||||| ||||||| |||||||||
Sbjct 61 TTCCATTCGAAGACCTCTTCAACCTACCAACGCTAACAACTTCTCTCACCGCCGCCCTCC 120
Query 140 TAACAAAAAGCCCAGACTCTGCCGTTACCCGGGTAAAGAAAATGTGACTCCGCCTCCTTC 199
|||||||||||||||||| ||||| | || ||||| || ||||||||||||||||| ||
Sbjct 121 AAACAAAAAGCCCAGACTCAGCCGTAATCCTGGTAAGGAGAATGTGACTCCGCCTCCGTC 180
Query 200 TCCGGATCCGGATCTCTTCTGCTCCTCTTCTACTCCTCACTGTATCTTAGATTGTATCCC 259
||||| | | ||||| || ||||||||||||||||| ||||||| |||||||||||||||
Sbjct 181 TCCGGGTGCAGATCTGTTATGCTCCTCTTCTACTCCACACTGTAGCTTAGATTGTATCCC 240
Query 260 ATCTAGTGTTGATTGCTCTCTAGGAGATTTCAATGGTCCAATTTCTTCTCTTGGTGAAGA 319
||||||||||||||| |||| | | |||||||||||||||||| ||||||||
Sbjct 241 ATCTAGTGTTGATTG--CTCT-----A--T---TGGTCCAATTTCTTCTCTCGGTGAAGA 288
Query 320 AGATAAAGAGGATAAGGACGACTGTATAAAGGTGAATCGTGAAGGTTATTTGTGTAATTC 379
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 289 CGATAAAGTGGATAAGGACGACTGTATAAAGATGAATCGTGAAGGTTATTTGTGTAATTC 348
Query 380 GATGGAGGCTAGGTTATTGAAATCGAGAATTTGTCTCGGGTTTGATAGTGGAATCCATGA 439
|||||||||||||||||||||||| |||||| |||||||||| ||| |||||||||||||
Sbjct 349 GATGGAGGCTAGGTTATTGAAATCTAGAATTCGTCTCGGGTTGGATTGTGGAATCCATGA 408
Query 440 GGATGATGAAG-GTTTTGTTGAGTCTAACTCTGAGCTTGATGTGTTGATAAACCTTTGCT 498
||||||||||| | ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 409 GGATGATGAAGAG-TTTGTTGAGTCCAACTCTGAGCTTGATGTGTTGATAAAGCTTTGCT 467
Query 499 CTGAGTCTGAGGGTAGGAGTGGAGAGTTTAGTTTAGGCAAGGATGATTCAATTCAATGCC 558
||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| || |
Sbjct 468 CTGAGTCTGAGGGTAGGAGTGGAGAGTGTAGTTTAGGCAATGATGATTCGATTCAGTGTC 527
Query 559 CATTGTGTTCCATGGATATTTCATCTTTGAGTGAAGAGCAGAGGCAAGTTCATAGCAATA 618
|||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 528 CATTGTGTTCAATGGATATTTCAGCTTTGAGTGAAGAGCAAAGGCAAGTTCATAGCAATA 587
Query 619 CTTGTCTTGATAAGTCATATAATCAGCCTTCTGAGCAAGACTCCTTGAGGAAATGCGAAA 678
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
Sbjct 588 CTTGTCTTGATAAGTCATATGATCAGCCTCCTGAGCAAGACTCCTTGAGGAAATGCGATA 647
Query 679 ATTTGTCTTCTCTTATAAAAGAATCGATTGATGATCCAGTTCAGCTTCCTCAGCTAGTTA 738
||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 648 ATTCGTCTTCTCTTATTGAAGAATCGACTGATGATCCAGTTCAGCTTCCTCAGCTAGTTA 707
Query 739 CCGACTTGTCTCCAGTGCTGAAATGGCTTAGGAGTCTAGGTTTAGCTAAATATGAAGATG 798
| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 708 CTGACCTGTCTCCAGTGCTTAAATGGCTTAGGAGTCTAGGTTTAGCTAAATATGAAGATG 767
Query 799 TTTTTATTCGTGAAGAGATCGACTGGGATACCCTTCAGTCACTCACTGAGGAGGATCTTC 858
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 768 TTTTTATTCGTGAAGAGATCGACTGGGATACCCTTCATTCACTCACTGAGGAGGATCTTC 827
Query 859 TAAGCATAGGTATCACGTCACTTGGTCCCAGAAAGAAGATTGTGAATGCACTTAGCGGAG 918
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 828 TAAGCATAGGTATCACGTCACTTGGTCCCAGAAAGAAGATTGTGAATGCACTTTGCGGAC 887
Query 919 TTAGAGATCCCTTTGCATCTTCTGCTGAAGTGCAGGCACAGTCTCATTGTACAAGTGGCC 978
||||||| |||||||||||||| ||||||| || |||||||||||||||||||||||||
Sbjct 888 TTAGAGAACCCTTTGCATCTTCAGCTGAAGCACATGCACAGTCTCATTGTACAAGTGGCC 947
Query 979 ATGTTACAGAGAGACAGAGAGATAAGTCAACCACTCGTAAGGCAAGTGAGCCCAAAAAAC 1038
||||||||||||||| ||| || |||||||||| |||| ||||||||| ||||||||||
Sbjct 948 ATGTTACAGAGAGACGGAGGGACAAGTCAACCAATCGTTGGGCAAGTGAACCCAAAAAAC 1007
Query 1039 CAACTGCAAACAAGTTGATTACAGAGTTTTTCCCTGGTCAGGCTACCGAGGGCACT-AAG 1097
|||||||||||||||||||||| || |||||||||||||||||||||||||| | | |||
Sbjct 1008 CAACTGCAAACAAGTTGATTACTGAATTTTTCCCTGGTCAGGCTACCGAGGGTA-TGAAG 1066
Query 1098 ATCCGGACA-GCCCCT--A-AACCTGTCGCAGAAAAGAGTCCATCAGATTCT-AGCTCTA 1152
|||| || | |||||| | ||||||||| ||||| |||||||||||||| | | |||||
Sbjct 1067 ATCC-GAAAGGCCCCTAAAGAACCTGTCGTAGAAAGGAGTCCATCAGATT-TAAACTCTA 1124
Query 1153 GACGTGCTGTGAGAAGAAATGGCAACAACGGAAAATCTAAAGTTATTCCACATTGGAATT 1212
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1125 GACGTGCTGTGAGAAGAAATGGCAACAATGGAAAATCTAAAGTCATTCCACATTGGAATT 1184
Query 1213 GCATTCCGGGGACACCTTTTCGAGTGGACGCATTCAAGTACCTCACACGCGATTGTTGCC 1272
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GCATTCCAGGGACACCTTTTCGAGTGGACGCATTCAAGTACCTCACACGCGATTGTTGCC 1244
Query 1273 ACTGGTTTCTTACACACTTTCATCTCGATCATTATCAAGGTTTGACAAAGTCATTTAGTC 1332
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1245 ATTGGTTTCTTACACACTTTCATCTCGATCATTATCAAGGTCTGACAAAGTCATTTAGTC 1304
Query 1333 ATGGGAAGATATACTGTTCCTTAGTTACCGCAAAGTTGGTAAATATGAAGATTGGGATAC 1392
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1305 ATGGGAAGATATACTGTTCCTTAGTTACCGCAAAGTTGGTAAATATGAAGATTGGGATCC 1364
Query 1393 CTTGGGAGAGACTGCAAGTCCTGGACCTTGGCCAGAAGGTTAATATTTCAGGCATTGATG 1452
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1365 CTTGGGAGAGACTGCAAGTCCTGGACCTTGGCCAGAAGGTTAATATTGCGGGCATTGATG 1424
Query 1453 TGACATGCTTTGATGCAAACCACTGTCCGGGATCCATCATGATACTCTTTGAACCAGCCA 1512
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 TGACATGCGTTGATGCAAACCACTGTCCGGGATCCATCATGATACTCTTTGAACCAGCCA 1484
Query 1513 ACGGTAAGGCTGTTCTACATACGGGGGATTTCCGCTATAGTGAAGAGATGTCAAATTGGT 1572
||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||||
Sbjct 1485 ACGGTAAGGCTGTTCTACATACGGGTGATTTTCGCTATAGGGAAGAGATGTCAGATTGGC 1544
Query 1573 TGATTGGATCGCATATCAGCTCTCTTATTCTTGATACTACATACTGTAACCCCCAGTATG 1632
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 TCATTGGATCGCATATCAACTCTCTTATTCTTGATACTACATACTGTAACCCCCAGTATG 1604
Query 1633 ACTTTCCAAAGCAAGAGGCGGTAATACAGTTTGTTGTTGAGGCTATTCAAGCAGAAGCAT 1692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 ACTTTCCAAAGCAAGAGGCGGTAATACAGTTTGTTGTTGAGGCTATTCAAGCAGAAGCAT 1664
Query 1693 TTAATCCCAAGACCCTTTTCTTAATTGGAAGCTACACCATCGGAAAGGAGAGGCTGTTCT 1752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 TTAATCCCAAGACCCTTTTCTTAATTGGAAGCTACACCATCGGAAAGGAGAGGCTGTTCT 1724
Query 1753 TGGAAGTTGCACGTGTGCTACGGGAAAAGATATACATCAATCCTGCGAAACTAAAACTCC 1812
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1725 TGGAAGTTGCACGTGTGCTACGGGAAAAGATATACATCAATCCTTCAAAACTAAAACTCC 1784
Query 1813 TCGAGTGTTTGGGATTCTCAAAGGATGATATACAGTGGTTTACAGTGAAGGAAGAGGAAA 1872
||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 1785 TCGAGTGCTTGGGATTCTCAAAGGACGATATGCAGTGGTTTACAGTGAAGGAAGAGGAGA 1844
Query 1873 GCCACATTCACGTTGTGCCTTTGTGGACGCTTGCCAGTTTCAAACGGCTGAAGCATGTAG 1932
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1845 GCCACATTCACATTGTGCCCTTGTGGACGCTTGCCAGTTTCAAACGGCTGAAGCATATAG 1904
Query 1933 CTAACCGATACACAAACCGTTACAGCCTTATCGTTGCATTTTCTCCTACTGGTTGGACAT 1992
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1905 CTAACCGATACACAAACCGTTACAGCCTTATCGTTACCTTTTCTCCTACTGGTTGGACAT 1964
Query 1993 CTGGTAAGACTAAAAAGAAGTCCCCAGGAAGAAGGTTGCAACAGGGTACAATAATAAGGT 2052
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1965 CTGGTAAGACTAAGAAGAAGTCCCCAGGAAGAAGGTTGCAACAGGGTACAATAATAAGGT 2024
Query 2053 ACGAGGTTCCTTACAGTGAGCATAGCAGCTTCACGGAGCTAAAAGAGTTTGTGCAAAAAG 2112
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2025 ACGAGGTTCCTTACAGTGAGCATAGCAGCTTCACAGAGCTAAAAGAGTTTGTGCAAAAAG 2084
Query 2113 TGTCACCTGAAGTCATCATACCGAGTGTAAACAATGATGGACCTGACTCTGCAGCTGCAA 2172
||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2085 CGTCGCCTGAAGTTATCATACCGAGTGTAAACAACGATGGACCTGACTCTGCAGCTGCAA 2144
Query 2173 TGGTGTCTTTGTTGGTTACGTAGAACTGTGTTT-ACATCTGCGATAAGCTT---T--GCA 2226
||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||
Sbjct 2145 TGGTGTCTTTGTTGGTTACGTAGAACTGTGTTTTACATCTGCGATAAGCTTAAGTTTGCA 2204
Query 2227 ACAAAAAGGCAGCCTCCTTGACTACCAATTGAGCAGAGACGTCAAAGATCTACAACGAAA 2286
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 2205 ACTAAAAGGCAGCCTCCTTGGCTACCAATTGAGCAGAGCCGTCAAAGATCTACGACGAAA 2264
Query 2287 ATGGATATGTTATGTTCTATCTAATTGTAGTTATGT 2322
| ||||||||| |||||||||||||||||||||||
Sbjct 2265 TTAGATATGTTACGTTCTATCTAATTGTAGTTATGT 2300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90845234325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5