BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G45710.1

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg902607 jgi|Araly1|902607|Al_scaffold_0004_3257                    416    8e-116
  Ahg486581 jgi|Araly1|486581|fgenesh2_kg.5__2573__AT3G61110.1         303    6e-82 


> Ahg902607 jgi|Araly1|902607|Al_scaffold_0004_3257
Length=261

 Score =  416 bits (225),  Expect = 8e-116
 Identities = 249/261 (95%), Gaps = 0/261 (0%)
 Strand=Plus/Plus

Query  83   ATGGTCCTTCAAAACGATATTGATCTGCTTAACCCTCCTGCTGAGCTCGAGAAGAGGAAG  142
            ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct  1    ATGGTCCTTCAAAACGATATTGATCTGCTTAACCCCCCTGCTGAGCTTGAGAAGAGGAAG  60

Query  143  CACAAGCTCAAGCGTCTTGTTCAATCACCCAATTCGTTTTTCATGGATGTCAAGTGTCAA  202
            |||||||| |||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct  61   CACAAGCTTAAGCGTCTTGTTCAGTCTCCCAATTCATTTTTCATGGATGTCAAGTGTCAA  120

Query  203  GGCTGCTTTAACATTACGACTGTGTTCAGCCACTCTCAGACCGTTGTGATGTGTGGAAAC  262
            ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct  121  GGCTGCTTTAACATTACAACGGTGTTCAGCCACTCTCAGACCGTTGTGATGTGTGGAAAC  180

Query  263  TGCCAGACTTTGCTCTGCACACCCACAGGAGGGAAGGCAAAGCTCACTGAAGGATGCTCT  322
            |||||||||||||| ||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct  181  TGCCAGACTTTGCTTTGCACACCCACCGGAGGAAAGGCAAGGCTCACTGAAGGATGCTCT  240

Query  323  TTCAGGAAAAAGTGAGACTGA  343
            |||||||||||||||||||||
Sbjct  241  TTCAGGAAAAAGTGAGACTGA  261


> Ahg486581 jgi|Araly1|486581|fgenesh2_kg.5__2573__AT3G61110.1
Length=463

 Score =  303 bits (164),  Expect = 6e-82
 Identities = 234/268 (87%), Gaps = 4/268 (1%)
 Strand=Plus/Plus

Query  78   CGAAAATGGTCCTTCAAAACGATATTGATCTGCTTAACCCTCCTGCTGAGCTCGAGAAGA  137
            |||| ||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct  67   CGAAGATGGTTCTTCAAAACGATATCGATCTGCTTAACCCACCTGCTGAGCTTGAGAAGA  126

Query  138  GGAAGCACAAGCTCAAGCGTCTTGTTCAATCACCCAATTCGTTTTTCATGGATGTCAAGT  197
            |||||||||||||||||||||||||||| || || ||||| || ||||||||||| ||||
Sbjct  127  GGAAGCACAAGCTCAAGCGTCTTGTTCAGTCTCCTAATTCCTTCTTCATGGATGTGAAGT  186

Query  198  GTCAAGGCTGCTTTAACATTACGACTGTGTTCAGCCACTCTCAGACCGTTGTGATGTGTG  257
            | ||||||||||| ||||| |||||||| ||||| ||||| ||||| ||||||||||| |
Sbjct  187  GCCAAGGCTGCTTCAACATCACGACTGTTTTCAGTCACTCGCAGACTGTTGTGATGTGCG  246

Query  258  GAAACTGCCAGACT-TTGCTCTGCACACCC-ACAGGAGGGAAGGCAAAGCTCACTGAAGG  315
            |||||||||| ||  || || ||| || || |||||||| |||||||| ||||| || ||
Sbjct  247  GAAACTGCCAAACAATT-CTGTGC-CAGCCTACAGGAGGAAAGGCAAAACTCACCGAGGG  304

Query  316  ATGCTCTTTCAGGAAAAAGTGAGACTGA  343
            |||||||||||||| |||| |||| |||
Sbjct  305  ATGCTCTTTCAGGAGAAAGGGAGATTGA  332



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20031684225


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5