BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G45710.1 Length=549 Score E Sequences producing significant alignments: (Bits) Value Ahg902607 jgi|Araly1|902607|Al_scaffold_0004_3257 416 8e-116 Ahg486581 jgi|Araly1|486581|fgenesh2_kg.5__2573__AT3G61110.1 303 6e-82 > Ahg902607 jgi|Araly1|902607|Al_scaffold_0004_3257 Length=261 Score = 416 bits (225), Expect = 8e-116 Identities = 249/261 (95%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 83 ATGGTCCTTCAAAACGATATTGATCTGCTTAACCCTCCTGCTGAGCTCGAGAAGAGGAAG 142 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 1 ATGGTCCTTCAAAACGATATTGATCTGCTTAACCCCCCTGCTGAGCTTGAGAAGAGGAAG 60 Query 143 CACAAGCTCAAGCGTCTTGTTCAATCACCCAATTCGTTTTTCATGGATGTCAAGTGTCAA 202 |||||||| |||||||||||||| || |||||||| |||||||||||||||||||||||| Sbjct 61 CACAAGCTTAAGCGTCTTGTTCAGTCTCCCAATTCATTTTTCATGGATGTCAAGTGTCAA 120 Query 203 GGCTGCTTTAACATTACGACTGTGTTCAGCCACTCTCAGACCGTTGTGATGTGTGGAAAC 262 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 121 GGCTGCTTTAACATTACAACGGTGTTCAGCCACTCTCAGACCGTTGTGATGTGTGGAAAC 180 Query 263 TGCCAGACTTTGCTCTGCACACCCACAGGAGGGAAGGCAAAGCTCACTGAAGGATGCTCT 322 |||||||||||||| ||||||||||| ||||| ||||||| ||||||||||||||||||| Sbjct 181 TGCCAGACTTTGCTTTGCACACCCACCGGAGGAAAGGCAAGGCTCACTGAAGGATGCTCT 240 Query 323 TTCAGGAAAAAGTGAGACTGA 343 ||||||||||||||||||||| Sbjct 241 TTCAGGAAAAAGTGAGACTGA 261 > Ahg486581 jgi|Araly1|486581|fgenesh2_kg.5__2573__AT3G61110.1 Length=463 Score = 303 bits (164), Expect = 6e-82 Identities = 234/268 (87%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 78 CGAAAATGGTCCTTCAAAACGATATTGATCTGCTTAACCCTCCTGCTGAGCTCGAGAAGA 137 |||| ||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||| Sbjct 67 CGAAGATGGTTCTTCAAAACGATATCGATCTGCTTAACCCACCTGCTGAGCTTGAGAAGA 126 Query 138 GGAAGCACAAGCTCAAGCGTCTTGTTCAATCACCCAATTCGTTTTTCATGGATGTCAAGT 197 |||||||||||||||||||||||||||| || || ||||| || ||||||||||| |||| Sbjct 127 GGAAGCACAAGCTCAAGCGTCTTGTTCAGTCTCCTAATTCCTTCTTCATGGATGTGAAGT 186 Query 198 GTCAAGGCTGCTTTAACATTACGACTGTGTTCAGCCACTCTCAGACCGTTGTGATGTGTG 257 | ||||||||||| ||||| |||||||| ||||| ||||| ||||| ||||||||||| | Sbjct 187 GCCAAGGCTGCTTCAACATCACGACTGTTTTCAGTCACTCGCAGACTGTTGTGATGTGCG 246 Query 258 GAAACTGCCAGACT-TTGCTCTGCACACCC-ACAGGAGGGAAGGCAAAGCTCACTGAAGG 315 |||||||||| || || || ||| || || |||||||| |||||||| ||||| || || Sbjct 247 GAAACTGCCAAACAATT-CTGTGC-CAGCCTACAGGAGGAAAGGCAAAACTCACCGAGGG 304 Query 316 ATGCTCTTTCAGGAAAAAGTGAGACTGA 343 |||||||||||||| |||| |||| ||| Sbjct 305 ATGCTCTTTCAGGAGAAAGGGAGATTGA 332 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20031684225 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5