BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45720.1
Length=2039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483708 jgi|Araly1|483708|fgenesh2_kg.4__2768__AT2G45720.1 2907 0.0
> Ahg483708 jgi|Araly1|483708|fgenesh2_kg.4__2768__AT2G45720.1
Length=1927
Score = 2907 bits (1574), Expect = 0.0
Identities = 1745/1830 (95%), Gaps = 2/1830 (0%)
Strand=Plus/Plus
Query 145 AACCCAGAAGCTGAAGCATAGATCTTTGTTTCCAGTGCTACGGAGTGCAAGGATTGTATT 204
|||||||||||| |||||||||||||| ||||||||||||| |||| |||||||||||||
Sbjct 99 AACCCAGAAGCTAAAGCATAGATCTTTCTTTCCAGTGCTACAGAGTTCAAGGATTGTATT 158
Query 205 TGTGTGTGATCATGGTGGAGGAGAAAACGGGAAACGTGACTCTACTTGATCAAACAGTTG 264
|||||||||||||||||||| ||| ||| ||||||| ||||| |||| | ||||||||
Sbjct 159 TGTGTGTGATCATGGTGGAGCAGATAACTGGAAACGAAACTCTGGTTGACCCAACAGTTG 218
Query 265 AAGATTTGTTATTACAGGCACAAGAGCTTGTACCGATCGCTTTGTCCAAAGCAAGAACAG 324
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 219 AAGATTTGTTATTACAGGCACAAGAGCTTGTACCGATGGCTTTGTCCAAAGCAAGAACAG 278
Query 325 TGAAAGGTTTCTCAAGCAGATGGAGAGTGATCATTTCAAGATTAGAGAAGATACCGACAT 384
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 279 TGAAAGGTTTCTCAAGCAGATGGAGAGTGATTATTTCAAGATTAGAGAAAATACCGACAT 338
Query 385 GTTTATCGGATTTGTCTAGCCATCCTTGCTTCTCTAAGCACACTCTATGCAAAGAGCAAC 444
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 339 GTTTATCGGATTTGTCTAGCCATCCTTGCTTCTCTAAACACACTCTATGCAAAGAGCAAC 398
Query 445 TTCAAGCAGTCTTAGAAACTTTGAAAGAAACCATCGAGCTCGCGAATGTTTGCGTAAGTG 504
||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 399 TTCAAGCGGTCTTAGAAACTTTGAAAGAAGCCATCGAGCTCGCTAATGTTTGCGTAAGTG 458
Query 505 AGAAGCAAGAGGGGAAATTGAAGATGCAGAGTGATCTAGATTCTCTATCTGCGAAGATTG 564
||||||||||||||| || |||||||||||||||||||||||||||||||| || ||||
Sbjct 459 CGAAGCAAGAGGGGAAGTTAAAGATGCAGAGTGATCTAGATTCTCTATCTGCCAAAATTG 518
Query 565 ATCTTAGCTTGAAAGATTGTGGATTGCTAATGAAAACAGGTGTTCTTGGAGAAGTTACGA 624
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 519 ATCTTAGCTTGAAAGATTGTGGATTGCTTATGAAAACAGGTGTTCTTGGAGAAGTTACAA 578
Query 625 AACCTTTATCTTCTTCGACTCAAGACTTGGAAACGTTCAGCGTTAGAGAATTGCTTGCTC 684
|| ||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||
Sbjct 579 AAACTTTATCTTCTTCGACTGAAGACTTGGAAACGTTTAGCGTCAGAGAATTGCTTGCTC 638
Query 685 GGCTTCAGATAGGTCACTTGGAGTCTAAACGCAAAGCGCTTGAGCAGCTCGTCGAGGTAA 744
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 639 GGCTTCAGATAGGTCACTTGGAGTCTAAACGCAAAGCGCTTGAGCAACTTGTAGAGGTAA 698
Query 745 TGAAAGAAGACGAAAAGGCGGTTATAACCGCTCTAGGCCGTACCAACGTCGCGTCTTTGG 804
|||||||||||||||||||||||||||||||| |||| || ||||| ||||| |||||||
Sbjct 699 TGAAAGAAGACGAAAAGGCGGTTATAACCGCTTTAGGTCGGACCAATGTCGCTTCTTTGG 758
Query 805 TGCAGCTTTTGACGGCTACCTCGCCTAGCGTAAGGGAAAACGCGGTGACTGTGATCTGCT 864
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 759 TGCAGCTTTTGACTGCTACTTCGCCTAGCGTAAGGGAAAACGCGGTGACTGTGATCTGCT 818
Query 865 CTCTAGCGGAATCAGGCGGATGCGAAAACTGGCTTATCTCTGAGAACGCATTGCCTTCAT 924
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 819 CTCTAGCGGAATCAGGCGGATGCGAAAACTGGCTTATCTCTGAGAACGCATTGCCTCCAT 878
Query 925 TGATAAGGCTACTAGAATCAGGAAGTATTGTTGCTAAGGAGAAAGCGGTTATTTCGTTGC 984
||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 879 TGATACGGCTACTAGAATCGGGAAGTCCTGTTGCTAAGGAGAAAGCGGTTATTTCGTTGC 938
Query 985 AGAGAATGTCTATTTCATCAGAGACATCGCGTTCAATTGTTGGTCACGGCGGGGTTGGTC 1044
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 939 AGAGAATGTCGATTTCATCAGAGACATCGCGTTCCATTGTTGGTCACGGCGGGGTTAGTC 998
Query 1045 CGTTGATCGAGATTTGCAAAACAGGGGACTCTGTTTCTCAATCCGCTTCTGCTTGTACTT 1104
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 999 CGTTGATCGAGATTTGCAAAACAGGGGACTCTGTTTCTCAATCAGCTTCTGCTTGTACTT 1058
Query 1105 TGAAGAACATTTCCGCTGTGCCTGAAGTAAGACAGAATCTAGCGGAAGAAGGAATCGTGA 1164
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1059 TAAAGAACATTTCCGCTGTGCCTGAAGTAAGACAGAATCTAGCTGAAGAAGGAATCGTTA 1118
Query 1165 AAGTGATGATTAACATACTTAACTGCGGAATCCTATTGGGATCTAAAGAATACGCAGCGG 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 AAGTGATGATTAACATACTTAACTGCGGAATCCTATTGGGATCTAAAGAATACGCAGCGG 1178
Query 1225 AATGTCTTCAGAATCTCACTTCAAGCAACGAAACTCTTCGAAGATCGGTTATATCAGAGA 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 AATGTCTTCAGAATCTCACTTCAAGCAACGAAACTCTTCGAAGATCGGTTATATCAGAGA 1238
Query 1285 ACGGAATACAAACTCTGCTCGCTTACTTAGACGGTCCTCTTCCTCAAGAATCAGGAGTTG 1344
| || || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1239 ATGGGATTCAAACTCTGCTAGCTTACTTAGACGGTCCTCTTCCTCAAGAATCAGGGGTTG 1298
Query 1345 CAGCAATTA-GGAATCTTGTTGGCTCTGTTTCTGTAGAGACTTACTTCAAGATAATCCCA 1403
|||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1299 CAGCAA-TACGGAATCTTGTTGGCTCTGTTTCTGTAGAGACTTACTTCAAGATAATACCA 1357
Query 1404 AGTTTAGTCCATGTTCTTAAATCAGGTTCAATCGGAGCTCAGCAAGCGGCTGCGTCAACT 1463
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 1358 AGTTTAGTCCATGTTCTTAAATCAGGATCAATCGGAGCTCAACAAGCGGCTGCATCAACT 1417
Query 1464 ATTTGCAGGATTGCTACCTCAAATGAGACAAAGAGAATGATCGGTGAATCAGGTTGTATC 1523
|| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1418 ATCTGCAGGATAGCTACATCAAATGAGACGAAGAGAATGATCGGTGAATCAGGTTGTATC 1477
Query 1524 CCGTTGTTGATAAGAATGTTGGAGGCGAAAGCGAGTGGAGCTAGAGAGGTTGCTGCTCAA 1583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 CCGTTGTTGATAAGAATGTTGGAGGCGAAAGCGAGTGGAGCTAGAGAGGTTGCTGCTCAA 1537
Query 1584 GCTATAGCGAGTCTGGTTACGGTTCCAAGGAATTGCAGAGAAGTGAAGAGAGATGAGAAA 1643
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1538 GCTATAGCGAGTCTGGTTACGGTTCCAAGGAATTGCAGAGAAGTAAAGAGAGATGAGAAG 1597
Query 1644 AGTGTGACGAGTCTTGTGATGTTGCTTGAGCCGAGTCCGGGTAACTCGGCAAAGAAGTAT 1703
||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 1598 AGTGTGACGAGTCTTGTGATGTTGCTTGAGCCGAGTCCGAGTAATTCTGCAAAGAAGTAT 1657
Query 1704 GCGGTTTCGGGTTTGGCGGCTTTGTGTTCGAGCAGGAAGTGTAAGAAGCTGATGGTCTCA 1763
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1658 GCGGTTTCGGGTTTGGCGGCTTTGTGTTCAAGCAGGAAGTGTAAGAAGCTGATGATCTCA 1717
Query 1764 CATGGAGCTGTTGGTTATTTGAAGAAGTTGTCGGAGTTGGAGGTTCCTGGTTCGAAGAAG 1823
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 1718 CATGGAGCTGTTGGTTATTTGAAGAAGTTGTCGGAGTTGGAGGTTCCTGGGTCAAAAAAG 1777
Query 1824 CTTCTTGAAAGGATTGAGAAAGGGAAATTAAAAAGTTTCTTTAGTAGGAAGTAGAAGAAA 1883
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1778 CTTCTTGAAAGGATTGAGAAAGGGAAACTAAGAAGTTTCTTTAGTAGGAAGTAGAAGAAA 1837
Query 1884 ATGAAGCAACGTGGTATATATATAATGTACTTGATATGTTTCATAATCTGTATGAAACTT 1943
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1838 ATGAAGCAACGTGGTATATATATAATGTATTTGATATGTTTCATACTCTGTATGAAACTC 1897
Query 1944 AGCCAATGATATCTTGTTTGGTGACCGTAT 1973
||||||||||||||||||||| |||||||
Sbjct 1898 GGCCAATGATATCTTGTTTGGTCACCGTAT 1927
Score = 135 bits (73), Expect = 9e-31
Identities = 94/103 (91%), Gaps = 5/103 (5%)
Strand=Plus/Plus
Query 1 AAATCTAAAGCTGACTAAACGACTCTGACACAGCTAACTTCTCTTTGTGAAAGAGAGTGT 60
||||||||||||||||||||||| ||||||||||| ||||||| | ||||||||||| |
Sbjct 1 AAATCTAAAGCTGACTAAACGACCCTGACACAGCTC-CTTCTCTGTCTGAAAGAGAGT-T 58
Query 61 CTTCTGCTTTTGTTTTTTGATTCAATTTCGAAATTCAAAGTTC 103
| |||||||||||||| |||||||||||||||||||||||||
Sbjct 59 -T-CTGCTTTTGTTTTT-GATTCAATTTCGAAATTCAAAGTTC 98
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76675663185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5