BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45740.1
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483710 jgi|Araly1|483710|fgenesh2_kg.4__2770__AT2G45740.2 1421 0.0
Ahg333410 jgi|Araly1|333410|fgenesh1_pm.C_scaffold_825000001 1247 0.0
Ahg935463 jgi|Araly1|935463|scaffold_403451.1 520 1e-146
> Ahg483710 jgi|Araly1|483710|fgenesh2_kg.4__2770__AT2G45740.2
Length=1064
Score = 1421 bits (769), Expect = 0.0
Identities = 924/992 (93%), Gaps = 37/992 (4%)
Strand=Plus/Plus
Query 135 AGTAGGTAGAAGAAGATGGGGACGACGTTAGATGTATCAAGAGCAGAGCTAGCACTTGTG 194
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 110 AGTAGGTAGAAGAAGATGGGGACGACATTAGATGTGTCAAGAGCAGAGCTAGCACTTGTG 169
Query 195 GTAATGTATTTGAACAAAGCAGAGGCAAGAGATAAGTTATGCAGAGCTATACAGTATGGT 254
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 170 GTAATGTATTTGAACAAAGCAGAGGCAAGGGATAAGTTATGCAGAGCGATACAGTATGGT 229
Query 255 TCCAAGTTCTTGAGTGGTGGACAACCTGGTACTGCTCAAAATGTTGACAAATCTACTAGC 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 TCCAAGTTCTTGAGTGGTGGACAACCTGGTACTGCTCAAAATGTTGACAAATCTACTAGC 289
Query 315 TTAGCAAGAAAAGTCTTCCGTCTTTTCAAGTTTGTGAATGACTTGCATGGTCTTATCAGT 374
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 290 TTAGCCAGAAAAGTCTTTCGTCTTTTCAAGTTTGTGAATGACTTGCATGGTCTCATCAGT 349
Query 375 CCTGTGCCTAAAGGAACTCCTCTTCCTCTTGTTTTACTTGGAAAGTCGAAGAACGCACTT 434
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 350 CCTGTGCCTAAAGGGACTCCTCTTCCTCTTGTTTTACTTGGAAAGTCGAAAAACGCACTT 409
Query 435 TTATCTACATTCTTGTTCCTGGATCAAATTGTCTGGCTTGGGAGATCAGGAATATATAAG 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 TTATCTACATTCTTGTTCCTGGATCAAATTGTCTGGCTTGGGAGATCAGGAATATATAAG 469
Query 495 AACAAAGAACGAGCTGAGTTACTTGGACGTATATCTCTCTTCTGCTGGATGGGATCTTCT 554
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 470 AACAAAGAACGAGCTGAGTTACTTGGACGTATATCTCTTTTCTGCTGGATGGGATCTTCT 529
Query 555 GTCTGCACAACTTTAGTCGAGGTTGGTGAGATGGGAAGGCTTTCTTCATCAATGAAGAAG 614
|| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 530 GTATGTACAACTTTAGTCGAGGTTGGTGAGATTGGAAGGCTTTCTTCATCAATGAAGAAG 589
Query 615 ATCGAAAAGGGACTCAAGAATGGAAACAAGTATCAGGATGAGGATTATCGTGCTAAGCTa 674
|||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||
Sbjct 590 ATCGAAAAGGGACTCAAGCATGGAAACAAGTATCAAGATGAGGAATATCGTGCTAAGCTA 649
Query 675 aaaaaaTCAAACGAGAGGTCACTTGCTTTGATCAAATCAGCTATGGACATTGTTGTAGCA 734
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 650 AAACAATCAAACGAGAGGTCACTTGCTTTGATCAAATCGGCTATGGACATTGTTGTAGCA 709
Query 735 GCTGGTCTTCTTCAGTTAGCTCCAACGAAGATCACTCCTCGTGTCACCGGAGCTTTTGGA 794
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 710 GCTGGTCTTCTTCAGTTAGCTCCAAAGAAGATCACTCCTCGTGTCACCGGAGCTTTTGGA 769
Query 795 TTCATCACCTCCATCATTTCTTGTTACCAGTTGCTTCCGACACGCCCCAAGATCAAAACA 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 TTCATCACCTCCATCATTTCTTGTTACCAGTTGCTTCCGACACGCCCCAAGATCAAAACA 829
Query 855 CCCTGAAGTCAATCGAGGAAGCTGGTGTTAAGGAGAAAGTCATTTCAGAAAGTTTCTGTT 914
|||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 830 CCCTGAAGTCGATCGAGGAAGCTGGTGTTAAGGAGAAAGTCATTTCAGAAAG-TTATGTT 888
Query 915 CTTCTTATTATTAAGGAAATTCACTGCTGTTATAAAACATCGTATAAAATACTTATTTGC 974
|||| |||||||||||||| |||||||||| ||| | | || | || |
Sbjct 889 GGTCTT-TTATTAAGGAAATTTGCTGCTGTTAT-AAA-A-C-------AT-CGTA--T-- 932
Query 975 AGGAATTACGGTTATTATAAATTTATGCCTCAGATTCTTGATACACAAGTTTCAATACTC 1034
| || | || | | |||||||||||||||||||||||||||| || | |
Sbjct 933 A--AA--A----TACT-T---TTTATGCCTCAGATTCTTGATACACAAG-TT---T--T- 973
Query 1035 AATAGTATTGCATTATTATGAGATGTTGTTTCTGCTACGCAATAACTAGAGGCAAAATCC 1094
||||||||||||||||||||||||||||||||||| | |||| ||||||| |||||||||
Sbjct 974 AATAGTATTGCATTATTATGAGATGTTGTTTCTGCAAAGCAAAAACTAGA-GCAAAATCC 1032
Query 1095 AACTACATATATGTTTTGATCTGATTATTATA 1126
|||||||||| |||||||||||||||||||||
Sbjct 1033 AACTACATATGTGTTTTGATCTGATTATTATA 1064
> Ahg333410 jgi|Araly1|333410|fgenesh1_pm.C_scaffold_825000001
Length=735
Score = 1247 bits (675), Expect = 0.0
Identities = 716/736 (97%), Gaps = 1/736 (0%)
Strand=Plus/Plus
Query 150 ATGGGGACGACGTTAGATGTATCAAGAGCAGAGCTAGCACTTGTGGTAATGTATTTGAAC 209
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGACGACATTAGATGTGTCAAGAGCAGAGCTAGCACTTGTGGTAATGTATTTGAAC 60
Query 210 AAAGCAGAGGCAAGAGATAAGTTATGCAGAGCTATACAGTATGGTTCCAAGTTCTTGAGT 269
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 AAAGCAGAGGCAAGGGATAAGTTATGCAGAGCGATACAGTATGGTTCCAAGTTCTTGAGT 120
Query 270 GGTGGACAACCTGGTACTGCTCAAAATGTTGACAAATCTACTAGCTTAGCAAGAAAAGTC 329
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 GGTGGACAACCTGGTACTGCTCAAAATGTTGACAAATCTACTAGCTTAGCCAGAAAAGTC 180
Query 330 TTCCGTCTTTTCAAGTTTGTGAATGACTTGCATGGTCTTATCAGTCCTGTGCCTAAAGGA 389
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 TTCCGTCTTTTCAAGTTTGTGAATGACTTGCATGGTCTCATCAGTCCTGTGCCTAAAGGG 240
Query 390 ACTCCTCTTCCTCTTGTTTTACTTGGAAAGTCGAAGAACGCACTTTTATCTACATTCTTG 449
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 ACTCCTCTTCCTCTTGTTTTACTTGGAAAGTCGAAAAACGCACTTTTATCTACATTCTTG 300
Query 450 TTCCTGGATCAAATTGTCTGGCTTGGGAGATCAGGAATATATAAGAACAAAGAACGAGCT 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCCTGGATCAAATTGTCTGGCTTGGGAGATCAGGAATATATAAGAACAAAGAACGAGCT 360
Query 510 GAGTTACTTGGACGTATATCTCTCTTCTGCTGGATGGGATCTTCTGTCTGCACAACTTTA 569
||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 361 GAGTTACTTGGACGTATATCTCTTTTCTGCTGGATGGGATCTTCTGTATGTACAACTTTA 420
Query 570 GTCGAGGTTGGTGAGATGGGAAGGCTTTCTTCATCAATGAAGAAGATCGAAAAGGGACTC 629
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTCGAGGTTGGTGAGATTGGAAGGCTTTCTTCATCAATGAAGAAGATCGAAAAGGGACTC 480
Query 630 AAGAATGGAAACAAGTATCAGGATGAGGATTATCGTGCTAAGCTaaaaaaaTCAAACGAG 689
||| |||||||||||||||| |||||||| |||||||||||||||||| |||||||||||
Sbjct 481 AAGCATGGAAACAAGTATCAAGATGAGGAATATCGTGCTAAGCTAAAACAATCAAACGAG 540
Query 690 AGGTCACTTGCTTTGATCAAATCAGCTATGGACATTGTTGTAGCAGCTGGTCTTCTTCAG 749
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 AGGTCACTTGCTTTGATCAAATCGGCTATGGACATTGTTGTAGCAGCTGGTCTTCTTCAG 600
Query 750 TTAGCTCCAACGAAGATCACTCCTCGTGTCACCGGAGCTTTTGGATTCATCACCTCCATC 809
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 601 TTAGCTCCAAAGAAGATCACTCCTCGTGTCACCGGAGCTTTTGGAT-CATCACCTCCATC 659
Query 810 ATTTCTTGTTACCAGTTGCTTCCGACACGCCCCAAGATCAAAACACCCTGAAGTCAATCG 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 660 ATTTCTTGTTACCAGTTGCTTCCGACACGCCCCAAGATCAAAACACCCTGAAGTCGATCG 719
Query 870 AGGAAGCTGGTGTTAA 885
||||||||||||||||
Sbjct 720 AGGAAGCTGGTGTTAA 735
> Ahg935463 jgi|Araly1|935463|scaffold_403451.1
Length=456
Score = 520 bits (281), Expect = 1e-146
Identities = 321/338 (95%), Gaps = 12/338 (4%)
Strand=Plus/Plus
Query 169 TATCAAGAGCAGAGCTAGCACTTGTGGTAATG--TA--T-T-TGAACAAAGCAGAGGCAA 222
|||||||||||||||||||||||||||||||| || | | ||||||||||||||||||
Sbjct 32 TATCAAGAGCAGAGCTAGCACTTGTGGTAATGTATATGTATCTGAACAAAGCAGAGGCAA 91
Query 223 GAGATAAGTTATGCAGAGC--TA-TACAGTATGGTTCCAAGTTCTTGAGTGGTGGACAAC 279
| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 92 GGGATAAGTTATGCAGAGCTATACTACAGTATGGTTCCAAGTTCTTGAGTGGTGGACAAC 151
Query 280 CTGGTACTGCTCAAAATGTTGACAAATCTACTAGCTTAGCAAGAAAAGTCTTCCGTCTTT 339
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 152 CTGGTACTGCTCAAAATGTTGACAAATCTACTAGCTTAGCCAGAAAAGTCTTTCGTCTTT 211
Query 340 TCAAGTTTGTGAATGACTTGCATGGTCTTATCAGTCCTGTGCCTAAAGGAACTCCTCTTC 399
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 212 TCAAGTTTGTGAATGACTTGCATGGTCTCATCAGTCCTGTGCCTAAAGGGACTCCTCTTC 271
Query 400 CTCTTGTTTTACTTGGAAAGTCGAAGAACGCACTTTTATCTACATTCTTGTTCCTGGATC 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 CTCTTGTTTTACTTGGAAAGTCGAAGAACGCACTTTTATCTACATTCTTGTTCCTGGATC 331
Query 460 AAATTGTCTGGCTTGGGAGATCAGGA--A-TATATAAG 494
|||||||||||||||||||||||||| | ||||||||
Sbjct 332 AAATTGTCTGGCTTGGGAGATCAGGAGGAATATATAAG 369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43307633712
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5