BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45750.1
Length=2136
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483713 jgi|Araly1|483713|fgenesh2_kg.4__2773__AT2G45750.1 3195 0.0
Ahg490494 jgi|Araly1|490494|fgenesh2_kg.6__3628__AT4G00750.1 671 0.0
> Ahg483713 jgi|Araly1|483713|fgenesh2_kg.4__2773__AT2G45750.1
Length=1975
Score = 3195 bits (1730), Expect = 0.0
Identities = 1886/1962 (96%), Gaps = 8/1962 (0%)
Strand=Plus/Plus
Query 91 TTGATTGAtttttttttCTTTAAGAGATGAATTTATTTACAAGAATCTCATCTCGGACTA 150
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1 TTGATTGATTTTTTTTTCTTTAAGAGATGAATTTATTTACAAGGATATCATCTCGGACTA 60
Query 151 AGAAGGCCAATCTTTACTACGTAACCCTAGTTGCTCTTCTCTGCATCGCTAGCTACCTTC 210
||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 61 AGAAGTCCAATCTTTACTACGTAACCCTAGTTGCGCTTCTCTGCATCGGTAGCTACCTTC 120
Query 211 TCGGTATTTGGCAAAACACGGCGGTTAATCCACGCGCCGCCTTCGATGATTCAGACGGTA 270
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 TCGGTATTTGGCAAAACACGGCGGTGAATCCACGCGCCGCCTTCGATGATTCAGACGGTA 180
Query 271 CACCGTGCGAGGGATTCACCAGACCTAATTCTACGAAAGATCTCGACTTCGACGCGCATC 330
||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 181 CACCGTGCGAGCAATTCACCAGACCGGATTCGACGAAAGATCTCGACTTCGACGCGCATC 240
Query 331 ACAACATTCAAGATCCACCTCCGGTGACGGAAACCGCCGTTAGTTTCCCGTCGTGTGCCG 390
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 241 ACAACATTCAAGATCCACCTCCGGTGACGGAAACCGCCGTTAATTTCCCGTCGTGCGGCG 300
Query 391 CCGCGTTGAGCGAGCACACGCCATGCGAAGACGCGAAGCGATCGTTGAAATTCTCGAGGG 450
||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 301 CCGAGTTGAGCGAGCACACGCCGTGCGAAGACGCGAAGCGATCGCTGAAATTCTCGAGGG 360
Query 451 AGAGATTGGAGTATAGGCAAAGGCATTGTCCCGAGAGAGAAGAAATCTTGAAGTGCAGAA 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGAGATTGGAGTATAGGCAAAGGCATTGTCCCGAGAGAGAAGAAATCTTGAAGTGCAGAA 420
Query 511 TTCCGGCGCCGTACGGTTACAAAACGCCGTTCCGATGGCCGGCGAGTCGTGACGTGGCGT 570
| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 421 TCCCGGCGCCGTACGGTTACAAAACGCCGTTCCGGTGGCCGGAGAGTCGTGACGTGGCGT 480
Query 571 GGTTCGCTAATGTGCCTCACACGGAGCTTACGGTTGAGAAAAAGAATCAGAATTGGGTCC 630
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 GGTTCGCTAATGTGCCTCACACGGAACTTACGGTTGAGAAAAAGAATCAGAATTGGGTCC 540
Query 631 GGTACGAGAATGATCGGTTTTGGTTCCCTGGTGGAGGTACGATGTTTCCACGTGGCGCTG 690
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 541 GGTACGAGAATGATCGGTTTTGGTTCCCTGGTGGCGGTACGATGTTTCCACGTGGCGCTG 600
Query 691 ATGCTTACATTGATGATATCGGACGGTTGATTGATCTCAGCGACGGCTCTATCCGTACAG 750
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATGCTTACATTGACGATATCGGACGGTTGATTGATCTCAGCGACGGCTCTATCCGTACAG 660
Query 751 CCATCGATACCGGTTGCGGGGTGGCTAGCTTCGGTGCATATCTTTTATCAAGAAACATTA 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCATCGATACCGGTTGCGGGGTGGCTAGCTTCGGTGCATATCTTTTATCAAGAAACATTA 720
Query 811 CAACGATGTCATTTGCACCAAGAGACACACACGAAGCTCAAGTCCAGTTCGCACTCGAGC 870
|||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||
Sbjct 721 CAACGATGTCATTTGCACCAAGGGACACACACGAGGCTCAGGTCCAGTTTGCACTCGAGC 780
Query 871 GTGGTGTGCCGGCGATGATCGGAATCATGGCTACAATCCGCCTACCGTACCCTTCTAGAG 930
|||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 781 GTGGCGTGCCTGCGATGATCGGAATCATGGCTACAATCCGCTTACCGTACCCTTCTAGAG 840
Query 931 CCTTTGATTTAGCACATTGCTCTCGTTGCCTTATTCCGTGGGGCCAAAACGATGGGGCTT 990
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 841 CCTTTGACTTAGCACATTGCTCTCGTTGCCTTATCCCGTGGGGCCAAAACGATGGGGCTT 900
Query 991 ACTTGATGGAGGTGGATAGGGTTTTAAGACCAGGAGGGTACTGGATACTTTCTGGACCGC 1050
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 901 ACTTGATGGAGGTGGATAGGGTTTTAAGACCAGGAGGGTATTGGATACTTTCTGGACCGC 960
Query 1051 CGATTAATTGGCAGAAACGGTGGAAAGGG-TGGGAACGGACCATGGATGATTTGAATGCA 1109
|||| |||||||||||||||||||| ||| ||||| ||||| ||||||||| ||||||||
Sbjct 961 CGATAAATTGGCAGAAACGGTGGAA-GGGATGGGAGCGGACGATGGATGATCTGAATGCA 1019
Query 1110 GAGCAGACTCAGATCGAGCAGGTCGCGAGAAGCTTGTGTTGGAAGAAAGTTGTTCAAAGA 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1020 GAGCAGACTCAGATCGAGCAGGTCGCGAGAAGCTTGTGTTGGAAGAAAGTTGTGCAGAGA 1079
Query 1170 GATGATCTTGCTATTTGGCAAAAACCCTTTAACCACATTGACTGTAAGAAAACCAGAGAG 1229
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1080 GATGATCTTGCTATTTGGCAAAAACCCTTTAACCACATTCACTGTAAGAAAACCAGACAG 1139
Query 1230 GTTTTGAAAAATCCGGAGTTTTGTCGTCATGATCAAGATCCCGACATGGCCTGGTATACG 1289
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GTTTTGAAGAATCCGGAGTTTTGTCGTCATGATCAAGATCCCGACATGGCCTGGTATACG 1199
Query 1290 AAGATGGATTCTTGTTTGACACCATTACCTGAAGTTGATGACGCTGAGGATCTAAAGACG 1349
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1200 AAGATGGATTCTTGTTTGACACCATTACCTGAAGTTGATGACGCGGAGGATCTAAAGACG 1259
Query 1350 GTGGCCGGAGGGAAGGTAGAAAAGTGGCCGGCTAGATTAAACGCGATTCCTCCGAGAGTA 1409
|||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||
Sbjct 1260 GTGGCCGGAGGGAAGGTAGAGAAGTGGCCGGCTAGGTTAAACGCGGTTCCTCCGAGAGTA 1319
Query 1410 AACAAAGGCGCTCTCGAGGAAATCACACCTGAAGCTTTCTTGGAGAACACGAAACTGTGG 1469
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1320 AACAAAGGCGATCTCGAGGAAATCACACCTGCAGCTTTCTTGGAGAACACGAAACTGTGG 1379
Query 1470 AAACAGAGAGTTTCTTATTACAAGAAGTTAGATTACCAGTTGGGTGAAACCGGGAGATAC 1529
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1380 AAACAGAGAGTTTCTTATTACAAGAAATTAGATTACCAGTTGGGTGATACCGGGAGATAC 1439
Query 1530 AGAAACTTAGTCGACATGAACGCTTACCTCGGTGGATTCGCGGCGGCTCTAG-CGGATGA 1588
||||||||||| |||||||| |||||||| |||||||||||||||||||||| || ||||
Sbjct 1440 AGAAACTTAGTTGACATGAATGCTTACCTTGGTGGATTCGCGGCGGCTCTAGTCG-ATGA 1498
Query 1589 TCCGGTCTGGGTCATGAACGTTGTCCCGGTCGAGGCTAAGCTCAATACGCTCGGTGTCAT 1648
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1499 TCCGGTCTGGGTCATGAACATTGTCCCGGTCGAGGCTAAGCTCAATACGCTCGGTGTTAT 1558
Query 1649 CTACGAGCGTGGTCTAATCGGAACGTATCAAAACTGGTGTGAAGCCATGTCGACGTATCC 1708
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1559 CTACGAGCGTGGTCTAATCGGAACGTATCAAAACTGGTGTGAAGCGATGTCGACGTACCC 1618
Query 1709 AAGAACGTATGATTTTATCCATGCTGACTCGGTTTTCACATTGTACCAAGGTCAA-TGTG 1767
|||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||
Sbjct 1619 AAGAACGTATGATTTTATCCATGCTGACTCGGTTTTCACATTATACCAAGGT-AAGTGTG 1677
Query 1768 AACCGGAGGAGATATTGTTGGAGATGGACCGAATTCTTAGACCGGGTGGTGGTGTGATTA 1827
||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1678 AACTGGAGGAGATATTGTTGGAGATGGACCGGATTCTTAGACCGGGTGGTGGAGTGATTA 1737
Query 1828 TAAGAGATGACGTGGACGTTTTGATCAAGGTTAAGGAATTAACCAAAGGATTAGAATGGG 1887
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1738 TAAGAGATGACGTGGACGTTTTGATCAAGGTTAAGGAATTAACTAAAGGATTAGAATGGG 1797
Query 1888 AAGGTAGAATTGCTGACCACGAGAAGGGTCCTCATGAAAGAGAGAAGATTTACTATGCGG 1947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 AAGGTAGAATTGCTGACCACGAGAAGGGTCCTCATGAAAGAGAGAAGATTTACTATGCGG 1857
Query 1948 TGAAACAGTATTGGACCGTTCCTGCGCCTGATGAAGATAAAAACAACACTAGTGCTCTCT 2007
||||||| ||||||||||||||||| ||| |||||||||||||||| |||||||||||||
Sbjct 1858 TGAAACAATATTGGACCGTTCCTGCTCCTTATGAAGATAAAAACAATACTAGTGCTCTCT 1917
Query 2008 CCTGAtttttgag-ttttttttttcttacaatgttttttttt 2048
||||||||| | ||||||||||||||||||||||||||||
Sbjct 1918 CCTGATTTT-GCTCTTTTTTTTTTCTTACAATGTTTTTTTTT 1958
> Ahg490494 jgi|Araly1|490494|fgenesh2_kg.6__3628__AT4G00750.1
Length=2065
Score = 671 bits (363), Expect = 0.0
Identities = 1144/1512 (76%), Gaps = 90/1512 (6%)
Strand=Plus/Plus
Query 510 ATTCCGGCGCCGTACGGTTACAAAACGCCGTTCCGATGGCCGGCGAGTCGTGACGTGGCG 569
||||| |||||||||||||||| || ||||| ||||||| ||| ||||||||||||
Sbjct 473 ATTCCAGCGCCGTACGGTTACACGGTACCTTTCCGGTGGCCGGAGAGCCGTGACGTGGCG 532
Query 570 TGGTTCGCTAATGTGCCTCACACGGAGCTTACGGTTGAGAAAAAGAATCAGAATTGGGTC 629
||||| ||||| ||||| || ||||| || ||||| ||||| ||||||||||| |||||
Sbjct 533 TGGTTTGCTAACGTGCCGCATACGGAACTAACGGTGGAGAAGAAGAATCAGAACTGGGTA 592
Query 630 CGGTACGAGAATGATCGGTTTTGGTTCCCTGGTGGAGGTACGATGTTTCCACGTGGCGCT 689
|||| ||||| ||| |||||| || |||||||| |||||||||||||||||||| |||
Sbjct 593 TGGTATGAGAAGGATAGGTTTTTATTTCCTGGTGGTGGTACGATGTTTCCACGTGGAGCT 652
Query 690 GATGCTTACATTGATGATATCGGACGGTTGATTGATCTCAGCGACGGCTCTATCCGTACA 749
||||||||||| || || |||||||||||||| |||||| ||||| || || || |||
Sbjct 653 GATGCTTACATCGACGAGATCGGACGGTTGATAAATCTCAAAGACGGATCAATTCGGACA 712
Query 750 GCCATCGATACCGGTTGCGGGGTGGCTAGCTTCGGTGCATATCTTTTATCAAGAAACATT 809
||||| ||||| || || ||||| || ||||| || || ||||| | || || |||| |
Sbjct 713 GCCATTGATACTGGATGTGGGGTAGCGAGCTTTGGGGCGTATCTAATGTCGAGGAACA-T 771
Query 810 A-CAACGATGTCATTTGCACCAAGAGACACACACGAAGCTCAAGTCCAGTTCGCACTCGA 868
| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 772 AGTAACGATGTCGTTTGCACCAAGAGACACACACGAAGCTCAAGTTCAGTTCGCACTTGA 831
Query 869 GCGTGGTGTGCCGGCGATGATCGGAATCATGGC-TACAATCCGCCTACCGTACCCTTCTA 927
| | || || || ||||| || ||| | | || | | ||| | || || | || | |
Sbjct 832 GAGAGGAGTCCCTGCGATCATAGGAGTGTTAGCCT-CTATCAGACTCCCATTTCCGGCCA 890
Query 928 GAGCCTTTGAT-TTAGCACATTGCTCTCGTTGCCTTATTCCGTGGGGCCAAAACGATGGG 986
||||||| || || || ||||||||||| || || ||||| ||||||||| || |||||
Sbjct 891 GAGCCTTCGACATT-GCTCATTGCTCTCGATGTCTCATTCCTTGGGGCCAATACAATGGG 949
Query 987 GCTTA-CTTGATGGAGGTGGATAGGGTTTTAAGACCAGGAGGGTACTGGATACTTTCTGG 1045
| || || ||| |||||||||||||| | ||||| || ||||| ||||| || |||||
Sbjct 950 ACGTATCT-GATAGAGGTGGATAGGGTACTGAGACCGGGTGGGTATTGGATTCTGTCTGG 1008
Query 1046 ACCGCCGATTAATTGGCAGAAACGGTGGAAAGGGT-GGGA-ACGGACCATG-GATGATTT 1102
|||||||||||| ||||||| || ||||| |||| |||| | | |||| | || ||| |
Sbjct 1009 ACCGCCGATTAACTGGCAGAGACATTGGAA-GGGTTGGGAGA-GAACCA-GAGACGATCT 1065
Query 1103 GAA-TGCAGAGCAGACTCAGATCGAGCAGG-TCGCGAGAAGCTTGTGTTGGAAGAAAGTT 1160
|| | | |||||| ||||||||||| ||| |||| || |||||||||||||||||| ||
Sbjct 1066 CAACT-CGGAGCAGTCTCAGATCGAG-AGGGTCGCTAGGAGCTTGTGTTGGAAGAAA-TT 1122
Query 1161 GTT-CAAAGAGATGATCTTGCTATTTGGCAAAAACCCTTTAACCACATTGACTGTAAGAA 1219
| | || ||||| |||||||| | ||||| |||||| ||||| ||| ||||||||
Sbjct 1123 GGTGCAGAGAGAGGATCTTGCGGTATGGCAGAAACCCACCAACCATATTCACTGTAAGCG 1182
Query 1220 -AACCAGAGAGGTTTTGAAAAATCCGGA-GTTTTGTCGTCATGATCAAGATCCCGAC-AT 1276
|| | || || ||| || | || ||| || | || || || | |||||| |
Sbjct 1183 CAATCGGATAGCTTT--AAGACGCCCTCCGTTCTGCCACCA-GA-CACTA-CCCGACCA- 1236
Query 1277 GGCCTGGTATACGAAGATGGATTCTTGTTTGACACCATTACCTGAAGTTG-ATGACGCTG 1335
||||||||| || ||| | || | ||||||||||| | || ||||| | || |||
Sbjct 1237 GGCCTGGTACACTAAGCTTGAAACCTGTTTGACACCGCTGCCGGAAGTAACAGGAT-CTG 1295
Query 1336 AGGATCTAAAGACGGTGGCCGGAGGGA-AGGTAGAAA-AGTGGCCGGCTAGATTAAACGC 1393
|| ||| ||||| | | || || || | || | | || | ||||| | ||||| || ||
Sbjct 1296 AG-ATC-AAAGAAG-TAGCAGGTGG-ACAGTTGGCAAGA-TGGCCTGAGAGATTGAATGC 1350
Query 1394 -GATTCCTCCGAG-AGTAAACAAA-GGC-GCTCTCGA-GGAAATCACACCTGAAGCTTTC 1448
| |||||||||| | | || || || ||| | || || | |||| ||| | | |
Sbjct 1351 TG-TTCCTCCGAGGA-TCAA-AAGTGGAAGCT-TGGAAGGGA-TCAC---TGAGGATGAC 1402
Query 1449 TTGG--AG-AACAC-GAAACTGTGGAAACAGA-GAGTTTCTTATTACAAGAAGT-TAGAT 1502
|| | || ||||| || || ||| | ||| |||| ||||| |||||||| | | ||
Sbjct 1403 TTAGTCAGCAACACAGAGACA-TGGCAG-AGAAGAGTGTCTTACTACAAGAAATAT-GAC 1459
Query 1503 TACCAGTTGG-GTGAAACCGGGA-GATACAGAAACTTAGTCGACATGAACGCTTACCTCG 1560
| ||| | | | || || |||| |||||||||||||| | |||||||||||| | || |
Sbjct 1460 CAGCAGCTAGCG-GAGAC-GGGAAGATACAGAAACTTACTTGACATGAACGCTCATCTTG 1517
Query 1561 GTGGATTCGCGGCGGCTCT-AG-CGGATGATCCGGTCTGGGTCATGAACGTTGTCCCGGT 1618
| || ||||| | || || || || ||||||| || |||||||||||||||||||| ||
Sbjct 1518 GGGGTTTCGCCTCAGC-CTTAGTCG-ATGATCCTGTGTGGGTCATGAACGTTGTCCCCGT 1575
Query 1619 CGAGGCTAA-GCTCAATACGCTCGGTGTCATCTACGAGCGTGG-TCTAATCGGAACGTAT 1676
||||| | | |||| || || || || ||||| ||||| || | | || |||||||||
Sbjct 1576 GGAGGCCAGTG-TCAACACCCTTGGAGTTATCTATGAGCGAGGGT-TGATTGGAACGTAT 1633
Query 1677 CAAAACTGGTGTGAAGCCATGTCGACGTATCCAAGAACGTATGATTTTATCCATGCTGAC 1736
||||||||||||||||| ||||| || || ||||||||||| ||||| |||||||| ||
Sbjct 1634 CAAAACTGGTGTGAAGCAATGTCAACTTACCCAAGAACGTACGATTTCATCCATGCCGAT 1693
Query 1737 TCGGTTTTCACAT-TGTACCAAGGTCA-ATGTGA-ACCGGAGGAGATATTGTTGGAGATG 1793
|| || |||| | ||||| ||| || |||||| | ||| || || ||| | || |||
Sbjct 1694 TCAGTGTTCAG-TCTGTACAAAGA-CAGATGTGACAT-GGAAGATATCTTGCTAGAAATG 1750
Query 1794 GACCGAATTCTTAGACCGG-GTGGTGGTGTGATTATAAGAGATGACGTGGACGTTTTGAT 1852
||| | ||||| ||||| | || | ||||| || ||||| ||| | || || || |
Sbjct 1751 GACAGGATTCTAAGACCAAAG-GGAAGCGTGATCATCAGAGACGACATTGATGTGTTAAC 1809
Query 1853 CAAGGTTAAGGA-ATTAACCAAA-G-GATTAGAATGGGAAGGTAGAATTGCTGACCACGA 1909
||| | ||| | |||| | | | | ||| |||||||||| ||||| | || || ||
Sbjct 1810 CAAAGCGAAGAAGATTA-C-AGATGCGATGC-AATGGGAAGGGAGAATAGGAGATCATGA 1866
Query 1910 GAAGGGTCCTCATGAAAGAGAGAAGA-TTTACTATGCG-GTGAAACAGTATTGGACCGTT 1967
||| || |||| |||||| ||||||| ||| | | | ||||| |||| |||||||
Sbjct 1867 GAACGGACCTCTTGAAAGGGAGAAGAGTTTGTT-T-CTTGTGAAGGAGTACTGGACCGCA 1924
Query 1968 CCTGCGCCTGAT 1979
||||||||||||
Sbjct 1925 CCTGCGCCTGAT 1936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80370416950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5