BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45760.1
Length=815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483714 jgi|Araly1|483714|fgenesh2_kg.4__2774__AT2G45760.1 952 0.0
> Ahg483714 jgi|Araly1|483714|fgenesh2_kg.4__2774__AT2G45760.1
Length=718
Score = 952 bits (515), Expect = 0.0
Identities = 632/684 (92%), Gaps = 25/684 (4%)
Strand=Plus/Plus
Query 60 ACACAAAACACACCATGTCGTATTCAACATTCAAAAGATCACTGGAGATTGAGGTAATCT 119
||| ||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 40 ACATAAAACACACCATGTCGTATTCAACAGTGAAACGATCACTGGAGATTGAGGTAATCT 99
Query 120 CAGCGGAAGGACTCAAGGTAGATCGAAAACCATTGAAGAAGAAAACATACAGCGTTGTGA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 100 CAGCGGAAGGACTCAAGGTAGATCGAAAACCATTGAAGAAGAAAACATACAGCGTAGTGA 159
Query 180 GAATCGATGAGAAATCTTGGGCTTCCAAAGTGGATGAACTAGGAGGGAGTTATCCAATTT 239
||||||||||||||||||||||||||||| |||| ||| ||||||||||||| |||||||
Sbjct 160 GAATCGATGAGAAATCTTGGGCTTCCAAATTGGACGAATTAGGAGGGAGTTACCCAATTT 219
Query 240 GGAAAGATAGATTTGATATGGAGATGCCAATAAACGCAAGTGTAAGGTTTATATCCATTG 299
||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 220 GGAAAGATAAATTCGATATGGAGATGCCAATAAACGCAAGTGTAAGGTTTATCTCCATTG 279
Query 300 AGGTTTACTATCGCACAAGTGGTAGTGGGAGGGACAAAAACGTAGGTTACGCCAAGATTC 359
||||||| |||||||||||| | | ||||| |||||||| || ||||||||||||||||
Sbjct 280 AGGTTTATTATCGCACAAGTAG--G-GGGAGTGACAAAAATGTTGGTTACGCCAAGATTC 336
Query 360 CGGTGACGGATTTCATGGGAGGTTTTGCTCCACAAGGGCATTTGAATTTCTTGAGTTACA 419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 CGGTGACGGATTTCATCGGAGGTTTTGCTCCACAAGGGCATTTGAATTTCTTGAGTTACA 396
Query 420 GGTTGAGAGATGAGTATGGTGACAAATGCGGAATCGTCAATGTGTCTATCATGGTGAAAC 479
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 397 GGTTGGGAGATGAGTATGGTGACAAATGTGGAATCGTCAATGTGTCTATCATGGTGAAAC 456
Query 480 CTGACGGTAATGATCATAAATCATCGTTGCCGTCGTCGTCGTTTGCGGTGGCTCCGGTGG 539
|||||||||||||| | || || || | ||||| | | || |||||||||||||
Sbjct 457 CTGACGGTAATGAT-A-AA-TC---GT--C-GTCGT--T--T--GCTGTGGCTCCGGTGG 501
Query 540 ATTATGCTGCGTGTTCTTGGCAAGCTACGGCGGCGGCGAGGAATAATCAAATGTGGAGAC 599
|||||||||||||||||||||||||||| ||||| ||| | |||||||||||||||||
Sbjct 502 ATTATGCTGCGTGTTCTTGGCAAGCTACCACGGCGTCGA--A-TAATCAAATGTGGAGAC 558
Query 600 CGAGGACATCTTCATCAATGGTTTCGACTGCTGGTTATGGTGGTGGTCGTGTAGTCACCG 659
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 559 CGAGGACATCTTCATCAATGGCTTCGACTGCTGGTTATGGCGGTGGTCGTGTAGTCACCG 618
Query 660 GCGTTCCTGTTTGGTGTGCGTATCAACGGCCGTCTTAATTTTTATTTATTTTCTCGTATA 719
| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 619 GAGTTCCTGTTTGGTGTGCGTATCAACGGCCGTCTTAATTTT-ATTT-TTTTCTCGTATA 676
Query 720 TAT--GCATGCACAGATTTATCTT 741
||| |||||||||||||||||||
Sbjct 677 TATATGCATGCACAGATTTATCTT 700
Score = 82.4 bits (44), Expect = 5e-15
Identities = 44/44 (100%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 2 AAACAATAAGGAATCTCCTGCAAAGAGGATTAGACTTATACATA 45
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAACAATAAGGAATCTCCTGCAAAGAGGATTAGACTTATACATA 44
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30117104430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5