BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45770.2
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483715 jgi|Araly1|483715|fgenesh2_kg.4__2775__AT2G45770.1 1748 0.0
> Ahg483715 jgi|Araly1|483715|fgenesh2_kg.4__2775__AT2G45770.1
Length=1385
Score = 1748 bits (946), Expect = 0.0
Identities = 1081/1143 (95%), Gaps = 21/1143 (2%)
Strand=Plus/Plus
Query 30 GCCATGGCAACTTCTTCTGCTCACCTCTCGTTTCTCGCCGGACGTATATCGCCGTTCTCC 89
|||||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 1 GCCATGGCAACTTCTTCTGCTCACCTCTCGTTTCTCGCCGGACGGATGTCTCCGTTCTCC 60
Query 90 TCCGAACGGATCGGATTATTTCCTCTCAGAGGAGAATTTCGTCCACGAATGACCCGGTTC 149
||||||||||||| ||||| || | ||||| ||||||||||||| |||| ||||||||
Sbjct 61 TCCGAACGGATCGTATTATCCCCACAAAGAGGTGAATTTCGTCCACCAATGTCCCGGTTC 120
Query 150 CGGTGCTCGGCCGGACCGAGCGGATTCTTCACGCGGCTGGGTCGGTTGATTAAGGAGAAG 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGGTGCTCGGCCGGACCGAGCGGATTCTTCACGCGGCTGGGTCGGTTGATTAAGGAGAAG 180
Query 210 GCCAAAAGCGACGTGGAGAAAGTTTTCTCCGGATTCTCTAAGACTAGGGAAAATCTAGCA 269
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GCCAAAAGCGACGTGGAGAAGGTTTTCTCCGGATTCTCTAAGACTAGAGAAAATCTAGCA 240
Query 270 GTCATCGACGAGCTCTTACTCTTCTGGAATCTTGCTGAAACAGACCGAGTTCTTGATGAA 329
||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 241 GTCATCGACGAGCTCTTGCTCTTCTGGAATCTTTCTGAAACAGACCGAGTTCTCGATGAA 300
Query 330 TTGGAAGAGGCGCTTTTGGTTTCTGATTTTGGACCGAAGATTACTGTTAGAATTGTGGAG 389
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 301 TTGGAAGAGGCGCTATTGGTTTCTGATTTTGGACCCAAGATTACTGTTAGAATTGTTGAG 360
Query 390 AGGCTAAGAGAGGATATCATGTCAGGAAAACTCAAATCAGGAAGCGAGATTAAGGATGCA 449
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 AGGCTAAGAGAGGATATCATGTCAGGGAAACTCAAATCAGGAAGCGAGATTAAGGATGCA 420
Query 450 TTGAAGGAAAGTGTGTTGGAGATGCTGGCTAAGAAAAACAGCAAGACAGAGCTTCAATTG 509
||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 TTGAAGGGAAGCGTGTTGGAGATGCTCGCTAAGAAAAACAGCAAGACAGAGCTTCAATTG 480
Query 510 GGTTTTAGGAAACCAGCTGTTATAATGATTGTTGGAGTGAACGGAGGTGGGAAGACGACA 569
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 481 GGTTTTAGGAAACCAGCTGTTATAATGATTGTTGGAGTCAACGGAGGTGGGAAGAC--CA 538
Query 570 TCTCTTGATTCTGGCTTTTGTTTTTCAGGAAAGCTGGCTCATAGATTGAAAAATGAAGGA 629
| | ||| | || |||||| |||||||||||||||| |||||||||
Sbjct 539 ---C---A-TCT--C--------TT--GGAAAGTTGGCTCATAGATTGAAGAATGAAGGA 579
Query 630 ACTAAGGTATTAATGGCAGCAGGTGATACATTTAGAGCAGCAGCAAGTGACCAATTAGAG 689
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 580 ACTAAGGTATTAATGGCAGCAGGTGATACATTTAGAGCAGCAGCAAGTGACCAGTTAGAG 639
Query 690 ATATGGGCAGAGAGGACTGGGTGTGAGATTGTTGTGGCTGAAGGAGACAAGGCTAAAGCA 749
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 640 ATATGGGCAGAGAGGACTGGGTGTGAGATTGTTGTGGCTGAAGGAGAGAAGGCTAAAGCA 699
Query 750 GCCACGGTTCTCTCAAAGGCTGTGAAAAGGGGGAAGGAGGAAGGTTATGATGTTGTACTG 809
|| || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 700 GCAACAGTTCTCTCAAAGGCTGTTAAAAGGGGGAAGGAGGAAGGCTATGATGTTGTACTG 759
Query 810 TGCGACACATCTGGACGTCTCCATACTAATTACAGTTTGATGGAGGAGTTGATTGCGTGC 869
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 760 TGTGACACATCTGGACGTCTTCATACTAATTACAGTTTGATGGAGGAGTTGATTGCGTGC 819
Query 870 AAAAAAGCAGTGGGCAAGATTGTCTCTGGTGCACCTAATGAGATCCTACTTGTCCTTGAT 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 AAAAAAGCAGTGGGCAAGATTGTCTCTGGTGCACCTAATGAGATCCTACTTGTCCTTGAT 879
Query 930 GGAAACACTGGTTTGAACATGCTTCCACAAGCTAGAGAATTCAACGAGGTTGTTGGTATC 989
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 880 GGAAACACTGGTTTGAACATGCTTCCGCAAGCTAGAGAATTCAACGAGGTTGTTGGTATT 939
Query 990 ACCGGTTTGATATTGACGAAACTAGATGGCTCTGCTAGAGGAGGCTGTGTGGTCAGTGTG 1049
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 940 ACCGGTTTGATATTGACGAAACTAGATGGCTCTGCTAGAGGAGGTTGTGTGGTCAGTGTG 999
Query 1050 GTTGAGGAATTGGGCATTCCCGTAAAGTTTATCGGTGTAGGAGAAGCTGTAGAAGATCTC 1109
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1000 GTTGAGGAATTGGGCATTCCCGTAAAGTTTATCGGAGTAGGAGAAGCTGTAGAAGATCTC 1059
Query 1110 CAACCTTTTGATCCGGAGGCTTTTGTGAATGCTATATTCTCTTAAGCCATAAAACCTCGT 1169
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1060 CAACCTTTTGATCCGGAGGCTTTTGTGAATGCTATATTCTCCTAAACCATAAAACCTCGT 1119
Query 1170 CTT 1172
|||
Sbjct 1120 CTT 1122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5