BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G45790.1 Length=1107 Score E Sequences producing significant alignments: (Bits) Value Ahg935542 jgi|Araly1|935542|scaffold_403530.1 1286 0.0 Ahg483717 jgi|Araly1|483717|fgenesh2_kg.4__2777__AT2G45800.1 102 5e-21 > Ahg935542 jgi|Araly1|935542|scaffold_403530.1 Length=782 Score = 1286 bits (696), Expect = 0.0 Identities = 739/760 (97%), Gaps = 2/760 (0%) Strand=Plus/Plus Query 100 CAATGGCGGCGAAAATTCCCGGAGTGATCGCTTTGTTCGACGTCGACGGTACTCTCACAG 159 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 20 CAATGGCGGCGAAAAAACCCGGAGTGATCGCTTTGTTCGACGTCGACGGTACTCTCACAG 79 Query 160 CTCCAAGGAAGGAAGCTACTCCAGAATTGCTCGATTTTATCCGAGAATTGCGAAAGGTCG 219 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 80 CTCCAAGGAAGGAAGCTACTCCTGAATTGCTCGATTTTATCCGAGAATTGCGCAAGGTCG 139 Query 220 TCACTATTGGAGTCGTCGGTGGATCTGATCTAAGTAAGATATCTGAGCAGCTTGGCAAAA 279 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 140 TCACTATTGGAGTCGTCGGTGGATCTGATCTAAGCAAGATATCTGAGCAGCTTGGGAAAA 199 Query 280 CAGTCACAAACGACTATGATTATTGTTTCTCTGAGAATGGTCTTGTCGCCCATAAAGATG 339 ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 200 CAGTCACAAACGACTATGATTATTGCTTCTCTGAGAATGGTCTTGTTGCCCATAAAGATG 259 Query 340 GGAAATCCATTGGAATTCAGAGCCTGAAGCTGCACCTTGGAGACGATAAACTCAAGGAGT 399 |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 260 GGAAATCCATTGGAGTTCAGAGCCTGAAGCTGCACCTTGGAGAAGATAAACTCAAGGAGT 319 Query 400 TGATAAATTTCACGCTGCACTACATTGCAGACCTGGATATTCCAATTAAGAGGGGAACAT 459 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 320 TGATAAATTTCACGCTGCACTACATTGCAGACTTGGATATTCCAATTAAGAGGGGAACAT 379 Query 460 TTATTGAATTCCGAAATGGAATGCTCAATGTATCACCCATTGGTCGCAACTGCAGCCAAG 519 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 380 TTATTGAATTCCGAAATGGAATGCTCAATGTATCACCCATTGGCCGCAACTGCAGCCAAG 439 Query 520 AAGAAAGAGATGAATTTGAGAGATATGATAAGGTTCAAAACATCCGACCAAAGATGGTAG 579 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 440 AAGAAAGAGATGAATTTGAGAGATATGATAAGGTTCAAAACATCCGACCAAAGATGGTAG 499 Query 580 CTGAACTTCGTGAGCGGTTTGCACATCTTAACCTTACTTTCTCAATTGGGGGACAGATAA 639 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 500 CTGAACTTCGTGAGCGGTTTGCACATCTTAACCTTACTTTCTCAATTGGAGGACAGATAA 559 Query 640 GCTTCGATGTCTTCCCTAAAGGTTGGGATAAGACTTACTGCTTGCAATACCTCGAGGACT 699 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 560 GCTTCGATGTCTTCCCTAAAGGTTGGGATAAGACTTACTGCTTGCAATACCTCGAGGAAT 619 Query 700 TCAGTGAAATCCATTTCTTCGGTGACAAGACCTATGAGGGTGGAAATGACTATGAAATCT 759 ||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 620 TCAATGAAATCCATTTCTTCGGTGACAAGACCTATGAGGGTGGAAACGATTATGAAATCT 679 Query 760 ATGAATCACCAAAAACAATTGGCCATTCAGTTACGAGTCCAGATGACACAGTGGCAAAAT 819 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 680 ATGAATCACCAAAAACAATTGGCCATTCAGTTACGAGTCCAGATGACACAATGGCAAAAT 739 Query 820 GCAAGGCTCTGTTCATGTCTTGAAACACTACTC-ATCTCA 858 |||||||||||||||||||||||||||| | || |||||| Sbjct 740 GCAAGGCTCTGTTCATGTCTTGAAACACAA-TCCATCTCA 778 > Ahg483717 jgi|Araly1|483717|fgenesh2_kg.4__2777__AT2G45800.1 Length=955 Score = 102 bits (55), Expect = 5e-21 Identities = 61/64 (95%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 1044 GTTAAAAATATCCTCTTCaaaaaaaaTTGGATGTTAAAGATTTTGTTTACAACAGATTCT 1103 |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 954 GTTAAAGATATCCTCTTCAAAAAAAATTGGATAATAAAGATTTTGTTTACAACAGATTCT 895 Query 1104 CTCC 1107 |||| Sbjct 894 CTCC 891 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41248996194 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5