BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45790.1
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935542 jgi|Araly1|935542|scaffold_403530.1 1286 0.0
Ahg483717 jgi|Araly1|483717|fgenesh2_kg.4__2777__AT2G45800.1 102 5e-21
> Ahg935542 jgi|Araly1|935542|scaffold_403530.1
Length=782
Score = 1286 bits (696), Expect = 0.0
Identities = 739/760 (97%), Gaps = 2/760 (0%)
Strand=Plus/Plus
Query 100 CAATGGCGGCGAAAATTCCCGGAGTGATCGCTTTGTTCGACGTCGACGGTACTCTCACAG 159
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 20 CAATGGCGGCGAAAAAACCCGGAGTGATCGCTTTGTTCGACGTCGACGGTACTCTCACAG 79
Query 160 CTCCAAGGAAGGAAGCTACTCCAGAATTGCTCGATTTTATCCGAGAATTGCGAAAGGTCG 219
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 80 CTCCAAGGAAGGAAGCTACTCCTGAATTGCTCGATTTTATCCGAGAATTGCGCAAGGTCG 139
Query 220 TCACTATTGGAGTCGTCGGTGGATCTGATCTAAGTAAGATATCTGAGCAGCTTGGCAAAA 279
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 140 TCACTATTGGAGTCGTCGGTGGATCTGATCTAAGCAAGATATCTGAGCAGCTTGGGAAAA 199
Query 280 CAGTCACAAACGACTATGATTATTGTTTCTCTGAGAATGGTCTTGTCGCCCATAAAGATG 339
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 200 CAGTCACAAACGACTATGATTATTGCTTCTCTGAGAATGGTCTTGTTGCCCATAAAGATG 259
Query 340 GGAAATCCATTGGAATTCAGAGCCTGAAGCTGCACCTTGGAGACGATAAACTCAAGGAGT 399
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 260 GGAAATCCATTGGAGTTCAGAGCCTGAAGCTGCACCTTGGAGAAGATAAACTCAAGGAGT 319
Query 400 TGATAAATTTCACGCTGCACTACATTGCAGACCTGGATATTCCAATTAAGAGGGGAACAT 459
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 320 TGATAAATTTCACGCTGCACTACATTGCAGACTTGGATATTCCAATTAAGAGGGGAACAT 379
Query 460 TTATTGAATTCCGAAATGGAATGCTCAATGTATCACCCATTGGTCGCAACTGCAGCCAAG 519
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 380 TTATTGAATTCCGAAATGGAATGCTCAATGTATCACCCATTGGCCGCAACTGCAGCCAAG 439
Query 520 AAGAAAGAGATGAATTTGAGAGATATGATAAGGTTCAAAACATCCGACCAAAGATGGTAG 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 AAGAAAGAGATGAATTTGAGAGATATGATAAGGTTCAAAACATCCGACCAAAGATGGTAG 499
Query 580 CTGAACTTCGTGAGCGGTTTGCACATCTTAACCTTACTTTCTCAATTGGGGGACAGATAA 639
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 500 CTGAACTTCGTGAGCGGTTTGCACATCTTAACCTTACTTTCTCAATTGGAGGACAGATAA 559
Query 640 GCTTCGATGTCTTCCCTAAAGGTTGGGATAAGACTTACTGCTTGCAATACCTCGAGGACT 699
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 560 GCTTCGATGTCTTCCCTAAAGGTTGGGATAAGACTTACTGCTTGCAATACCTCGAGGAAT 619
Query 700 TCAGTGAAATCCATTTCTTCGGTGACAAGACCTATGAGGGTGGAAATGACTATGAAATCT 759
||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 620 TCAATGAAATCCATTTCTTCGGTGACAAGACCTATGAGGGTGGAAACGATTATGAAATCT 679
Query 760 ATGAATCACCAAAAACAATTGGCCATTCAGTTACGAGTCCAGATGACACAGTGGCAAAAT 819
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 680 ATGAATCACCAAAAACAATTGGCCATTCAGTTACGAGTCCAGATGACACAATGGCAAAAT 739
Query 820 GCAAGGCTCTGTTCATGTCTTGAAACACTACTC-ATCTCA 858
|||||||||||||||||||||||||||| | || ||||||
Sbjct 740 GCAAGGCTCTGTTCATGTCTTGAAACACAA-TCCATCTCA 778
> Ahg483717 jgi|Araly1|483717|fgenesh2_kg.4__2777__AT2G45800.1
Length=955
Score = 102 bits (55), Expect = 5e-21
Identities = 61/64 (95%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 1044 GTTAAAAATATCCTCTTCaaaaaaaaTTGGATGTTAAAGATTTTGTTTACAACAGATTCT 1103
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 954 GTTAAAGATATCCTCTTCAAAAAAAATTGGATAATAAAGATTTTGTTTACAACAGATTCT 895
Query 1104 CTCC 1107
||||
Sbjct 894 CTCC 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41248996194
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5