BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45800.1
Length=1015
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483717 jgi|Araly1|483717|fgenesh2_kg.4__2777__AT2G45800.1 1338 0.0
> Ahg483717 jgi|Araly1|483717|fgenesh2_kg.4__2777__AT2G45800.1
Length=955
Score = 1338 bits (724), Expect = 0.0
Identities = 778/804 (97%), Gaps = 3/804 (0%)
Strand=Plus/Plus
Query 1 AAAAGaaaaaaaCACAAAACCTGGTGTTTTTTCTCTCGTCGTCGTTTGGTCGTGTCCTAA 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAGAAAAAAACACAAAACCTGGTTTTTTTTCTCTCGTCGTCGTTTGGTCGTGTCCTAA 60
Query 61 GACAAGAACCGGCGAACGAAGAACAAACTTTTTGAATCTAACATCCGAAAGAAAGAGAGA 120
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 GACAAGAACCGGCGAACGAAGAACAAACTTTTTGAATCTAATTTCCGAAAGAAAGAGAGA 120
Query 121 AAATGTCGTTTACAGGAACATTGGATAAATGCAAGGCCTGTGACAAAACCGTGTACGTGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAATGTCGTTTACAGGAACATTGGATAAATGCAAGGCCTGTGACAAAACCGTGTACGTGA 180
Query 181 TGGATTTGTTAACATTAGAGGGTAATACTTATCACAAATCATGTTTCAGATGCACCCATT 240
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 181 TGGATTTGTTAACATTAGAGGGTAACACTTATCACAAATCATGTTTCAGATGCAGCCATT 240
Query 241 GCAAAGGCACTCTCGTGATAAGCAATTACTCATCAATGGATGGAGTTCTTTACTGTAAGC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 GCAAAGGCACTCTCGTGATAAGCAATTACTCATCAATGGATGGAGTTCTTTATTGTAAGC 300
Query 301 CACACTTCGAACAGCTTTTCAAAGAATCTGGCAATTACAGCAAGAATTTTCAGGCAGGAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 301 CACACTTCGAACAGCTTTTCAAAGAATCTGGCAATTACAGCAAGAATTTTCAGACTGGAA 360
Query 361 AGACCGAGAAGCCCAATGATCATCTGACTCGAACTCCAAGCAAGTTATCATCATTCTTCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGACCGAGAAGCCCAATGATCATCTGACTCGAACTCCAAGCAAGTTATCATCATTCTTCA 420
Query 421 GTGGAACACAAGACAAATGTGCGACTTGTAAGAAGACGGTTTACCCACTTGAGAAAGTAA 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 421 GTGGAACACAAGACAAATGTGCGACTTGTAAGAAAACGGTTTACCCACTTGAGAAAGTAA 480
Query 481 CAATGGAAGGAGAAAGTTACCACAAGACTTGCTTCAGGTGCACACACAGTGGTTGTCCTT 540
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 CAATGGAAGGAGAAAGTTACCACAAGACTTGCTTCAGGTGCAGTCACAGTGGTTGTCCTT 540
Query 541 TGACTCACTCTTCTTACGCTTCTCTTAATGGCGTCCTCTACTGTAAAGTCCACTTCAATC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 541 TGACTCACTCTTCTTACGCTTCTCTTAATGGCGTCCTCTACTGTAAAGTCCATTTCAATC 600
Query 601 AGCTCTTTCTCGAGAAAGGCAGTTACAATCACGTCCATCAAGCCGCTGCTAACCACCGTC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGCTCTTTCTCGAGAAAGGCAGTTACAATCACGTCCATCAAGCCGCTGCTAACCACCGTC 660
Query 661 GATCCGCCTCTTCTGGTGGCGCTTCTCCTCCTTCTGATGATCACAAACCTGACGACACCG 720
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||
Sbjct 661 GATCCGCCTCTTCTGGTGGCGCTTCTCCCCCTTCTGATGATCACAAACCTGAAGACAGCG 720
Query 721 CCTCAATTCCCGAAGCAAAAGAAGATGACGCTGCCCCTGAAGCTGCAGGAGAAGAGGAGC 780
||||||||||||| | |||||||||||| ||| | |||||||||||||||| | | |||
Sbjct 721 CCTCAATTCCCGAGGGAAAAGAAGATGAATCTGTCGCTGAAGCTGCAGGAGA-G-G-AGC 777
Query 781 CTGAGCCGGTCGTTGAGTCTTGAA 804
||||||| || |||||||||||||
Sbjct 778 CTGAGCCTGTGGTTGAGTCTTGAA 801
Score = 217 bits (117), Expect = 2e-55
Identities = 131/137 (96%), Gaps = 3/137 (2%)
Strand=Plus/Plus
Query 865 TTTAATGAATATATAAATACAAATTGTTGTTGTTTCTTCTTGTAAATTCTTGTAAAGTTT 924
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 821 TTTAATGAATATATAAATAC-AATTGTTGTTGTTTCTTCTTGTAAATTCTTGTAAAGTTT 879
Query 925 TAAAGCTCTTTTTGGAGAGAATCTGTTGTAAACAAAATCTTTAACATCCAAttttttttG 984
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 880 -AAAGCTCTTTT-GGAGAGAATCTGTTGTAAACAAAATCTTTATTATCCAATTTTTTTTG 937
Query 985 AAGAGGATATTTTTAAC 1001
|||||||||| ||||||
Sbjct 938 AAGAGGATATCTTTAAC 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37741687830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5