BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45830.1
Length=2033
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483721 jgi|Araly1|483721|fgenesh2_kg.4__2781__AT2G45830.1 2961 0.0
Ahg486604 jgi|Araly1|486604|fgenesh2_kg.5__2596__AT3G61270.1 1083 0.0
> Ahg483721 jgi|Araly1|483721|fgenesh2_kg.4__2781__AT2G45830.1
Length=1945
Score = 2961 bits (1603), Expect = 0.0
Identities = 1836/1947 (94%), Gaps = 22/1947 (1%)
Strand=Plus/Plus
Query 3 AAAAACTAAAAAGTAAACAAGATTCACACAAAAATATGAACGTCATTAACACAAAAGATG 62
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 AAAAACTAAAAAGTAAACAAGATTCACACAAAAATATGAACTTCATTAACACAAAAGATG 60
Query 63 TGAACTCTGGTTAGTGTTGAAGATAACGTGAAACAAGATTCAAATCCTCGTGGAAGAGCA 122
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 61 TGAACTCTGGTTAGTGTTGAAGAAAACGTGAAACAAGATTCAAATCCTCGTGGAAAAGCA 120
Query 123 CC-A-A-TCGATCACCAGAATCAAACCTTTGAGCTTCCTCCTAGCTTCGGTAACGTTTAA 179
|| | | ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCAATATTCGATCATCAGAATCAAACCTTTGAGCTTCCTCCTAGCTTCGGTAACGTTTAA 180
Query 180 TCTCACCTGATTCTCGTTTTTCTTCTCTTCCTGTTGAATGTTTGTGAACATAGATATATA 239
|||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 181 TCTCGCCTGATTCTCGTTTTTCTTCTCTTCCTGTTGAATGTTTGTGAGCATATATATATA 240
Query 240 TAAAGCTGAGATAGATATAGATTCATGCTTCAACGGAAAAGCATGAAGAGGAACAACAAC 299
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 241 CAAAGCTGAGATAGATATAGATTCATGCTTCACCGGATAAGCATGAAGAGGAACAACAAC 300
Query 300 AATCTTCTAACGAACAAGAATAAGTATGTCTATCTTAAAACGGCGTCGCATCCAGCAAAA 359
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 AATCCTCAAACGAACAAGAATAAGTATGTCTGTCTTAAAACGGCGTCGCATCCAGCAAAA 360
Query 360 AGCATCGCTAAAGCTACTCTGTTCCTCGTCACCTCTCTCTTCATATCTGCTGGTCTCTTA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGCATCGCTAAAGCTACTCTGTTCCTCGTCACCTCTCTCTTCATATCTGCTGGTCTCTTA 420
Query 420 GACTTATTGGGTTGTTTCGATTTCACAACTTTTACAGGTCTGAAGCAGGTAACAACTAGT 479
|| |||||||||||||||||||||||||||||| ||||||||| ||| |||||||| | |
Sbjct 421 GATTTATTGGGTTGTTTCGATTTCACAACTTTTGCAGGTCTGATGCAAGTAACAACAACT 480
Query 480 ATCAGAAAATCACCAATCACAAGCCAAAGATTCCCTAACCAATGCGGCGTCGTTCAGAAC 539
|||||||||||||||||||||| || |||||||||||||||||||| |||||| |||||
Sbjct 481 ATCAGAAAATCACCAATCACAAACCGAAGATTCCCTAACCAATGCGACGTCGTAAAGAAC 540
Query 540 CAAACTCAATTATTTCCCCAAAATGGCTCCTCGAGAAACAACGAC---AAACCCAGAAGC 596
|||||||||||||||||| || |||||||||||||||||||| || ||||||||||||
Sbjct 541 CAAACTCAATTATTTCCCGAAGATGGCTCCTCGAGAAACAACAACAAAAAACCCAGAAGC 600
Query 597 AGCCATTCAAGAATATCCACGTGTCCTTCTTACTTCCGTTGGATCCACGAAGATCTACGG 656
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGCCATTCACGACCATCCACGTGTCCTTCTTACTTCCGTTGGATCCACGAAGATCTACGG 660
Query 657 CCATGGAAAGAGACAGGTGTAACGAGAGGGATGCTTGAGAAAGCCAGGAGGACGGCGCAT 716
|||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||
Sbjct 661 CCATGGAAAGAGACAGGTATAACGAGAGGGATGCTTGAAAAAGCGAGGAGGACGGCGCAT 720
Query 717 TTCAGAGTAGTAATCCTCGACGGGAGAGTGTACGTTAAGAAATATAGAAAGTCAATCCAA 776
||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 721 TTCAGGGTAGTAATCCTCGACGGGAGAGTGTACGTTAAGAAGTACAGAAACTCAATCCAG 780
Query 777 ACAAGAGACGTTTTTACTCTGTGGGGCATCGTACAGTTACTACGGTGGTACCCAGGTAGG 836
|| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 781 ACTAGAGATGTTTTTACTCTGTGGGGTATCGTACAGTTGCTACGGTGGTACCCAGGTAGA 840
Query 837 TTACCGGATCTTGAGCTCATGTTTGACCCAGATGATAGACCAACCGTCCGATCTAAAGAC 896
| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTGCCAGATCTTGAGCTTATGTTTGACCCAGATGATAGACCAACCGTCCGATCTAAAGAC 900
Query 897 TTTCAAGGTCAACAACACCCGGCCCCGCCTCCTTTGTTCCGTTATTGCTCTGATGACGCC 956
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 TTTCAAGGTCAACAGCACCCGGCCCCGCCTCCTTTATTCCGTTATTGCTCTGATGACGCC 960
Query 957 AGCTTGGATATTGTCTTCCCTGATTGGTCCTTCTGGGGCTGGGCTGAGGTTAATATAAAG 1016
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AGCTTGGATATCGTCTTCCCTGATTGGTCCTTCTGGGGCTGGGCTGAGGTTAATATAAAG 1020
Query 1017 CCTTGGGATAAATCGCTAGTGGCGATAGAAGAAGGGAATAAGATGACTCAATGGAAAGAC 1076
||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1021 CCTTGGGCTAAATCGCTAGTGGCGATAGAAGAAGGGAACAAGATGACGCAATGGAAAGAC 1080
Query 1077 CGCGTGGCGTATGCTTATTGGAGAGGAAA-CCCTAATGTGGCTCCAACTAGAAGAGATCT 1135
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1081 CGCGTGGCGTATGCTTATTGGAGAGGAAATCCC-AATGTGGCTCCAACTAGAAGAGATCT 1139
Query 1136 TCTCAGATGTAATGTCTCAGCTCAAGAAGATTGGAACACACGTCTCTACATTCAGGATTG 1195
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TCTTAGATGTAATGTCTCAGCTCAAGAAGATTGGAACACACGTCTCTACATTCAGGATTG 1199
Query 1196 GGATAGAGAGTCAAGAGAAGGATTCAAGAACTCTAACCTAGAGAACCAATGCACCCACAG 1255
||||||||| || ||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct 1200 GGATAGAGAATCTAGAGAAGGATTCAAGAATTCAAACCTAGAGAACCAATGCAACCACAG 1259
Query 1256 GTACAAGATTTATATAGAAGGATGGGCATGGTCAGTGAGTGAGAAATATATAATGGCATG 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GTACAAGATTTATATAGAAGGATGGGCATGGTCAGTGAGTGAGAAATATATAATGGCATG 1319
Query 1316 TGATTCAATGACATTGTACGTGAGACCTATGTTCTATGATTTTTACGTACGAGGAATGAT 1375
||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1320 TGATTCAATGACACTATACGTGAGACCTATGTTCTATGATTTTTACATACGAGGAATGAT 1379
Query 1376 GCCATTACAACATTACTGGCCAATCAGAGACACCTCTAAGTGTACTTCCCTCAAATTCGC 1435
||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1380 GCCATTACAACATTATTGGCCCATCAGAGACAACTCTAAGTGTACTTCCCTCAAATTCGC 1439
Query 1436 CGTACATTGGGGGAATACTCATTTGGACCAGGCGAGTAAGATAGGAGAAGAAGGGAGTAG 1495
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1440 CGTACATTGGGGAAATACTCATTTGGACCAGGCGAGTAAGATAGGAGAAGAAGGAAGTAG 1499
Query 1496 GTTTATTAGAGAGGAAGTGAAAATGGAATATGTGTATGACTACATGTTCCATTTGATGAA 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GTTTATTAGAGAGGAAGTGAAAATGGAATATGTGTATGACTACATGTTCCATTTGATGAA 1559
Query 1556 CGAGTATGCAAAACTTTTGAAGTTTAAACCAGAGATTCCGTGGGGAGCCACGGAGATTAC 1615
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1560 CGAGTATGCAAAACTTTTGAAGTTTAAACCGGAGATTCCGTGGGGAGCCACCGAGATTAC 1619
Query 1616 GCCGGATATTATGGGCTGCTCG-GCGACGGGACGGTGGAGAGATTTCATGGAGGAGTCTA 1674
||| |||| |||||||||| | |||||||| ||||||||||||||||||| ||||||||
Sbjct 1620 GCCTGATAGTATGGGCTGC-CAAGCGACGGGGCGGTGGAGAGATTTCATGGCGGAGTCTA 1678
Query 1675 TGGTTATGTTTCCTAGTGAAGAGTCTCCTTGTGAGATGCCTTCTCCTTTTAACCCTCATG 1734
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1679 TGGTGATGTTTCCTAGTGAAGAGTCTCCTTGTGAGATGCCTTCTCCTTTTAACCCTCAGG 1738
Query 1735 ATTTAAAAGAGATTCTTGAGAGAAAAACTAATTTGACTCGTCAAGTTGAGTGGTGGGAAG 1794
|||||| |||| |||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1739 ATTTAAGAGAGGTTCTTGAGAGAAAAGCTAATTTGACTCGTCAAGTTGAGTTGTGGGAAG 1798
Query 1795 ATCAATATTTTCATGATTTAGC-----C-AATATCAAGAAGCCTTGACCAAAAAGGCTCT 1848
||||||| ||||||||||| || | |||| |||||||||||||||||| |||||||
Sbjct 1799 ATCAATACTTTCATGATTTGGCTTTGGCCAATAGCAAGAAGCCTTGACCAAAGAGGCTCT 1858
Query 1849 TGTGTTTGTTTAGATGATTGAGTTGTATTCATATATTGAAATTAGTGA-AAAGTAAACGA 1907
||| ||||||||||||||||| ||| ||| || ||||||||||||| | ||||||||| |
Sbjct 1859 TGT-TTTGTTTAGATGATTGATTTGCATTTAT-TATTGAAATTAGT-ATAAAGTAAACTA 1915
Query 1908 GTAAtt-tttttt-CCGACTAGTATGT 1932
|||||| |||||| ||||||||| |||
Sbjct 1916 GTAATTCTTTTTTTCCGACTAGTGTGT 1942
> Ahg486604 jgi|Araly1|486604|fgenesh2_kg.5__2596__AT3G61270.1
Length=1538
Score = 1083 bits (586), Expect = 0.0
Identities = 1030/1240 (83%), Gaps = 47/1240 (4%)
Strand=Plus/Plus
Query 602 TTCAAGAAT-ATCCACGTGTCCTTCTTACTTCCGTTGGATCCACGAAGATCTACGGCCAT 660
||||| ||| |||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 267 TTCAA-AATCATCCACGTGTCCTTCTTATTTCCGTTGGATCCATGAAGATCTACGGCCGT 325
Query 661 GGAAAGAGACAGGTG-TAACGAGAGGGATGCTTG-AGAAAGCCAGGAGGACGGCGCATTT 718
||||| | || || | |||| ||||||||| | | || |||| || || |||||||||||
Sbjct 326 GGAAACAAAC-GGGGATAACTAGAGGGATGATCGAAG-AAGCGAGTAGAACGGCGCATTT 383
Query 719 CAGAGTAGTAATCC-TCGACGGG-AGAGTGTACGTTAAGAAATATAGAAAGTCAATCCAA 776
||| | || |||| | ||||| || | ||||||||||| |||||| |||||||| |||
Sbjct 384 TAGATTGGTGATCCGT-AACGGGAAG-GCGTACGTTAAGAGATATAGGAAGTCAATTCAA 441
Query 777 ACAAGAGACGTTTTTACTCTGTGGGGCATCGTACAGTTACTACGGTGGTACCCAGGTAGG 836
|||||||| | ||||||||||||||| ||||||||||| ||||||||||||| ||||
Sbjct 442 ACAAGAGATGATTTTACTCTGTGGGGAATCGTACAGTTGTTACGGTGGTACCCTGGTAAA 501
Query 837 TTACCGGATCTTGAGCTCATGTTTGACCCAGATGATAGACCAACCGTCCGATCTA-AAGA 895
||||| ||||| ||||| ||||| ||| | ||||| | || ||||||||| | ||
Sbjct 502 TTACCTGATCTGGAGCTTATGTTCGACGCTGATGACCGTCCCGTCGTCCGATC-AGCTGA 560
Query 896 CTTTCA-AGGTCAACAACACCCGGCCCCGCCTCC-TTTGTTCCGTTATTGCTCTGATGAC 953
|||| | ||||||| | | | || ||||| || |||||||| || || ||||||
Sbjct 561 CTTT-ATTGGTCAAC-AGA--AGAAACCACCTCCAGTT-TTCCGTTACTGTTCAGATGAC 615
Query 954 GCCAGCTTGGATATTGTCTTCCCTGATTGGTCCTTCTGGGGCTGGGCTGAGGTTAATATA 1013
||||||||||| ||||||||||||||||||||||| |||||||||||||| || || |||
Sbjct 616 GCCAGCTTGGACATTGTCTTCCCTGATTGGTCCTTTTGGGGCTGGGCTGAAGTGAACATA 675
Query 1014 AAGCC-TTGGGATAAATCGCTAGTGGCGATAGAAGAAGGGAATAAGATGACTCAATGGAA 1072
||||| | |||| ||||| | | ||| ||| |||||||||| || ||||| ||||||||
Sbjct 676 AAGCCATGGGGA-GAATCGTTGGAGGCAATAAAAGAAGGGAACAATATGACGCAATGGAA 734
Query 1073 AGACCGCGTGGCGTATGCTTATTGGAGAGGAAACCCTAATGTGGCTCCAACTAGAAGAGA 1132
|| ||||||||||| |||||||||||||| || ||| |||| | ||| ||| ||||
Sbjct 735 GGAACGCGTGGCGTACGCTTATTGGAGAGGTAATCCTTATGTTGATCCTGGAAGAGGAGA 794
Query 1133 TCTTCTC-AGATGTAATGTCTCAGCTCAAGAAGATTGGAACACACGTCTCTACATTCAGG 1191
||||||| || |||||||| |||| || ||||| ||||| || |||||||| |||||||
Sbjct 795 TCTTCTCAAG-TGTAATGTTTCAGAACATGAAGAGTGGAATACTCGTCTCTATATTCAGG 853
Query 1192 ATTGGGATAGAGAGTCAAGAGAAGGATTCAAGAACTCTAACCTAGAGAACCAATGCACCC 1251
||||||||| ||| |||| |||||||| ||||||||| || ||||||||||| |||||||
Sbjct 854 ATTGGGATAAAGAATCAAAAGAAGGATACAAGAACTCAAATCTAGAGAACCAGTGCACCC 913
Query 1252 ACAGGTACAAGATTTATATAGAAGGATGGGCATGGTCAGTGAGTGAGAAATATATAATGG 1311
| || |||||||| ||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 914 ATAGATACAAGATATATATAGAAGGATGGGCATGGTCGGTTAGTGAGAAATACATAATGG 973
Query 1312 CATGTGATTCAATGACATTGTACGTGAGACCTATG-TTCTATGATTTTTACGTACGAGGA 1370
|||| || ||||||||||| || || | ||| | | ||||| ||||| ||| ||||||||
Sbjct 974 CATGCGACTCAATGACATTATATGTTAAACCAA-GATTCTACGATTTCTACATACGAGGA 1032
Query 1371 ATGATGCCATTACAACATTACTGGCCAATCAGAGAC-ACCTCTAAGTGTACTTCCCTCAA 1429
|||||||||||||||||||| ||||||||||||||| | || ||||||||||| |||||
Sbjct 1033 ATGATGCCATTACAACATTATTGGCCAATCAGAGACGAT-TCCAAGTGTACTTCTCTCAA 1091
Query 1430 ATTCGCCGTACATTGGGGGAATACTCATTTGGACCAGGCGAGTAAGATAGGAGAAGA-AG 1488
|||||||||||||||||| ||||| || ||||| |||| || |||||||||| | ||
Sbjct 1092 ATTCGCCGTACATTGGGGAAATACACACGTGGACAAGGCTCGTGAGATAGGAGA-GCTAG 1150
Query 1489 GGAGTAGGTTTATTAGAGAGGAAGTGAAAATGGAA-TATGTGTATGACTACATGTTCCAT 1547
||||||| ||||| |||||||||||||| ||| || |||||||||||||||||||| |||
Sbjct 1151 GGAGTAGATTTATAAGAGAGGAAGTGAATATG-AAGTATGTGTATGACTACATGTTTCAT 1209
Query 1548 TTGA-TGAACGAGTATGCAAAACTTTTGAAGTTTAAACCAGAGATTCCGTGGGGA-GCC- 1604
|| | | || |||||||||| ||| ||||| ||||| || |||||||| | || | ||
Sbjct 1210 TT-ACTCAAAGAGTATGCAACACTCTTGAAATTTAAGCCGGAGATTCCTTTGG-ATGCGG 1267
Query 1605 ACGGAGATTACGCCGGATATTATGGGCTG-CTCGGCGACGGGACGGTGGAGAGATTTCAT 1663
| |||||| |||||||||| |||||| || | || |||||| ||||||||||||||||||
Sbjct 1268 A-GGAGATCACGCCGGATAGTATGGGATGTCCCG-CGACGGAACGGTGGAGAGATTTCAT 1325
Query 1664 GGAGGAGTCTATGGTTATGTTTCCTAGTGAAGAGTCTCCTTGTGAGATGCCTTC-TCCTT 1722
|| ||||||||||||| | | ||| |||||||||||||||||||| |||| ||| |||||
Sbjct 1326 GGCGGAGTCTATGGTTCTATCTCCAAGTGAAGAGTCTCCTTGTGAAATGC-TTCCTCCTT 1384
Query 1723 TTAACCCTC-ATGATTTAAAAGAGATTCTTGAGAGAAAAACTAATTTGACTCGTCAAGTT 1781
| |||||| | | |||||||||| |||||||||||||| ||||||| || ||||| |||
Sbjct 1385 ATGACCCTCTA-GCTTTAAAAGAGGTTCTTGAGAGAAAAGCTAATTTAACACGTCAGGTT 1443
Query 1782 GAGTGGTGGGAAGATCAA-TATTTTCATGAT-TTAGCCAA 1819
|||| ||||||| | ||| || ||||| ||| ||| ||||
Sbjct 1444 GAGTTGTGGGAAAA-CAAATACTTTCAAGATCTTA-CCAA 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76447121715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5