BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45840.1
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483723 jgi|Araly1|483723|fgenesh2_kg.4__2783__AT2G45840.1 2523 0.0
Ahg939170 jgi|Araly1|939170|scaffold_503361.1 200 3e-50
Ahg899091 jgi|Araly1|899091|Al_scaffold_0005_3057 128 1e-28
> Ahg483723 jgi|Araly1|483723|fgenesh2_kg.4__2783__AT2G45840.1
Length=1657
Score = 2523 bits (1366), Expect = 0.0
Identities = 1549/1635 (95%), Gaps = 21/1635 (1%)
Strand=Plus/Plus
Query 4 TTGAATTAAACACATAATATCTATGAGTTCTCACGTGGTTGATGATCAAAGGCAACCTAA 63
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 TTGAATTAAACACATAATATCTATGAGTTCTCACGTGGTTGATCATCAAAGGCAACCTAC 60
Query 64 TAACTCAATCTCGAGTTTAAGTTCTAAACTAACCAAGCCATGGATC-ACAACCACAATCT 122
||||||||||||||||||||||| |||||||||||||||||||||| || ||| ||||||
Sbjct 61 TAACTCAATCTCGAGTTTAAGTTATAAACTAACCAAGCCATGGATCAAC-ACCTCAATCT 119
Query 123 TCATCTTTGTCTTCTTCTTCTTCATCATCCTCGTTGGAGCTTCTCTCAGGTGGATGGACA 182
|||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 120 TCATCTTTGTTTTCTTCTTCTTCATCATCCTCCTTGGAGCTTCTCTCAGCTGGATGGACA 179
Query 183 TGTTTTTAATCGGTGGAGGTAGAATCAAAGTGACACCAATATTTACAAGAAACACCAACG 242
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGTTTTCAATAGGTGGAGGTAGAATCAAAGTGACACCAATATTTACAAGAAACACCAACG 239
Query 243 CAACTATCCCCAAGGAAAAACTC-ACTACACCACTGAACTTCACATTGCAATGCTCACTA 301
|||||||||||||| ||||| || | ||||||| | ||||||||||||||||||||||||
Sbjct 240 CAACTATCCCCAAGAAAAAAATCTA-TACACCAGTTAACTTCACATTGCAATGCTCACTA 298
Query 302 GACCAGAACATAGCAACCCA-GACGTGTCCTGCAAGCAACCCGGAGAAATCACAACCTAG 360
||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 299 GACCAGAACATAGCAACACATG-TGTGTCCTGCAAGCAACCCGGAGAAATCACAACCTAG 357
Query 361 TAAGGACGAGCCAGAGACTTGTCCAGACTACTTCAGGTGGATCCACAAGGATCTT-GAAG 419
||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 358 TAAGGACGATCCAGAGACTTGTCCAGACTACTTCAGGTGGATCCACAAGGAT-TTAGAAG 416
Query 420 CATGGCGTGAGACTGGAATCACTCGAGAGACGTTAGAGAGAGCAAGTGATAAAGCTCACT 479
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 417 CATGGCGTGGGACTGGAATCACTCGAGAGACGTTAGAGAGAGCGAGTGATAAAGCTCACT 476
Query 480 TCCGGCTGATAATAAAAGGAGGAAGAGTGTATGTGCATCAATACAAGAAATCTTTTCAGA 539
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 477 TCAGGCTGATAATAAAAGGAGGAAGAGTGTATGTGCAACAATACAAGAAATCTTTTCAGA 536
Query 540 CAAGAGATGTTTTCACTATATGGGGAATAGTACAGCTGCTAAGGATGTATCCTGGTCAAG 599
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 537 CAAGAGATGTTTTCACTATATGGGGAATAGTACAGCTTCTAAGGATGTATCCTGGTCAAG 596
Query 600 TCCCTGATCTTGAGCTTCTCTTCATGTGCCATGACTCACCTGAAATCTGGAGAAGAGACT 659
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 597 TCCCTGATCTTGAGCTTCTCTTCATGTGCCATGACTTACCTGAAATCTGGAGAAGAGACT 656
Query 660 ATAGGCCAAGACCAGGAGTCAATGTGACGTGGCCACCTCCTCCACTCTTCCACTATTGTG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ATAGGCCAAGACCAGGAGTCAATGTGACGTGGCCACCTCCTCCACTCTTCCACTATTGTG 716
Query 720 GACATTCCGGTGCTTTCGACATTGTCTTCCCTGACTGGAGCTTTTGGGGCTGGCCGGAGA 779
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 717 GCCATTCCGGTGCTTTCGACATTGTCTTCCCCGACTGGAGCTTTTGGGGCTGGCCGGAGA 776
Query 780 TTAACATAAAGGAGTGGAATAAACA-GTCGGAGTTGATAAGTGAAGGGATAAAGAAGGTG 838
||||||||||||||||||||||| | || |||| ||||||||||||| |||||||||||
Sbjct 777 TTAACATAAAGGAGTGGAATAAA-ATGTTGGAGGCGATAAGTGAAGGGTTAAAGAAGGTG 835
Query 839 AAGTGGGAAGAGAGAGAGCCTTACGCATATTGGAAGGGGAATCCTGGAGTTGCCATGGTC 898
||||||||||||||||| ||||||||||||||||| |||||||||||||||| || |
Sbjct 836 AAGTGGGAAGAGAGAGAACCTTACGCATATTGGAAAGGGAATCCTGGAGTTGGCAAG--- 892
Query 899 AGAAGAGACCTCATGCATTGTCATGACCCTATGGTTCATCTCTATCGCCAGGATTGGAGC 958
||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||| |
Sbjct 893 AGAAGAGACCTCATGAATTGTCATGACCCCATGGTTCATCTCTATAGCCAGGATTGGTGG 952
Query 959 AGAGAGGGCAGGATTGGGTATAGGACATCAAACCTAGAAGATCAATGCACCCACAGGTAC 1018
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 953 AAAGAGGGCAGGATTGGGTATAGGACTTCAAACCTAGAAGATCAATGCACCCACAGGTAC 1012
Query 1019 AAGATTTATGTAGAAGGAAGGGCTTGGTCAGTGAGTGAGAAGTATATATTAGCTTGTGAC 1078
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1013 AAGATTTATGTAGAAGGAAGGGCTTGGTCAGTCAGCGAGAAGTATATATTAGCTTGTGAC 1072
Query 1079 AGCATGACTCTTCTTGTGAAGCCATTTTACTTTGACTTCTTCACTAGAAGCTTAGTTCCA 1138
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 AGTATGACTCTTCTTGTAAAGCCATTTTACTTTGACTTCTTCACTAGAAGCTTAGTTCCA 1132
Query 1139 ATGGAGCATTATTGGCCCATAAGACCTCAAGAAAAATGTAGTGACATTGTCTTTGCTGTC 1198
||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1133 ATGGAGCATTACTGGCCCATTAGACCTCGAGAAAAATGTAGTGACATTGTCTTTGCTGTC 1192
Query 1199 CATTGGGGCAACAACAATACCAAAAAGGCCAGAGCTATAGGGAGAAATGGAAGTGGGTAT 1258
|||||||| |||||||| ||||||| ||||| ||||||| ||||||||||||||||||||
Sbjct 1193 CATTGGGGGAACAACAACACCAAAAGGGCCAAAGCTATATGGAGAAATGGAAGTGGGTAT 1252
Query 1259 GTGCGAAAGAATCTAAAGATGAAGTATGTGTATGATTACATGTTGCATCTACTGCAAAGC 1318
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1253 ATACGAAAGAATCTAAAGATGAAGTATGTGTATGATTACATGTTGCATCTATTGCAAAGC 1312
Query 1319 TATGGGAAGTTGATGAAGATGAATGTAGAAGTGCCTCAAGGAGCCAAGGAAGTGTGTCCG 1378
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1313 TATGGGAAGTTGATGACGATGAATGTAGAAGTACCTCAAGGAGCCAAGGAAGTGTGTCCG 1372
Query 1379 GAGACAATGGCTTGTCCAATCAATGGAGGCCGAATGAGACAATCTATGGATGACTCATTG 1438
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1373 GAGACAATTGCTTGTCCAATCAATGGAGGCCGAATGAGACACTCTATGGATGACTCATTG 1432
Query 1439 GTTATGTCTCCGAGCGTTAAGGCTACTTGTGAGATGCCTCCACCTTttgaagaagatgag 1498
|||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1433 GTTATGTCACCGAGCGTTAAGGCTGCTTGTGAGATGCCTCCAACTTTTGAAGAAGATGAG 1492
Query 1499 ctcaaaaagtttcttgagaagaaagaaagtgttgagaaagaagttgagaagtGGACTAAT 1558
||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1493 CTCAAGAGGTTTCTTGAGAAGAAAGAAAGTATTGAGAAAGAAGTTGAGAAGTGGACTAAT 1552
Query 1559 GAGTATTGGCAGGAACAGAAGAAGATTCTTAAACATTGAGCTA-TTAT--A---A-AAAA 1611
||||||||| ||||||||||||||||||||||||||||||||| |||| | | ||||
Sbjct 1553 GAGTATTGGGAGGAACAGAAGAAGATTCTTAAACATTGAGCTAGTTATTTATCTACAAAA 1612
Query 1612 -CAAAATTAATTATG 1625
||||||||||||||
Sbjct 1613 ACAAAATTAATTATG 1627
> Ahg939170 jgi|Araly1|939170|scaffold_503361.1
Length=731
Score = 200 bits (108), Expect = 3e-50
Identities = 310/405 (77%), Gaps = 23/405 (6%)
Strand=Plus/Plus
Query 377 ACTTGTCCAGACTACTTCAGGTGGATCC-ACAAGGATCTTGAAGCATGGCG-TGAGACTG 434
|||||||| ||||||||||| ||||||| |||| || || |||||||| | ||||| |
Sbjct 304 ACTTGTCCTGACTACTTCAGATGGATCCAACAA-GACCTAAAAGCATGG-GAAGAGACAG 361
Query 435 GAATCACTCGAGAGACGTTAGAGAGAGC-AAGTGATAAAGCTCACTTCCGGCTGA-TAAT 492
| ||||| | || || |||||||||| || | |||||||| ||| |||| | | ||
Sbjct 362 GGATCACAAGGGAAACACTAGAGAGAGCAAAACCA-AAAGCTCATTTCAGGCT-AGTGAT 419
Query 493 AAAAG-GAGGAAGAGTGTATGTGCATCAATACAAGAAATCTTTTCAGACAAGAGATGTTT 551
||| ||| ||| ||||||| ||||| ||| | || ||| | || |||||||||||
Sbjct 420 -TAAGTCAGGGAGATTGTATGTTCATCAGTACGACAAGGCTTATGAGTCAAGAGATGTTC 478
Query 552 TCACTATATGGGGAATAGTACAGCTGCTAAGGATGTATCCTGGTCAAGTCCCTGATCTTG 611
|||| || ||||| ||| | ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 479 TCACAATCTGGGGGATACTTCAGCTTCTAAGAATGTATCCTGGTCAAGTCCCTGATCTTG 538
Query 612 AGCTTCTCTTCATGTGCCATGACTCA-CCTGAAATCTGGAGAA-GAGACTATAGGCCAAG 669
||||||||||| | || ||||| | | || | || |||| || |||||| ||||| ||
Sbjct 539 AGCTTCTCTTCTTCTGTCATGA-TAAACCCGCTATTTGGA-AACGAGACTTTAGGC-AA- 594
Query 670 ACCAGGAGTCAA-TGTGACGTGGCCACCTCCTCCACTCTTCCACTATTGTGGACATTCCG 728
||| | ||| || |||||||| ||||| || | || || || ||||| || |||
Sbjct 595 -CCACAAC-CAAATGCCACGTGGCCTCCTCCACCGTTGTTTCAGTACTGTGGTCA--CCG 650
Query 729 -GT-GCTTTCGACATTGTCTTCCCTGACTGGAGCTTTTGGGGCTG 771
| || | || ||| || |||||||| |||||||| ||||||||
Sbjct 651 TGAAGCCTACGGCATCGTTTTCCCTGATTGGAGCTTCTGGGGCTG 695
> Ahg899091 jgi|Araly1|899091|Al_scaffold_0005_3057
Length=339
Score = 128 bits (69), Expect = 1e-28
Identities = 167/213 (78%), Gaps = 12/213 (6%)
Strand=Plus/Plus
Query 1265 AAGAATC-TAAAGATGAAGTATGTGTATGATTACATGTTGCATCTACTGCAAAGCTATGG 1323
||||| | |||||||||||||||||||||||||||||||| || | | ||| |||||||
Sbjct 52 AAGAA-CTTAAAGATGAAGTATGTGTATGATTACATGTTGTATGTGTTACAAGGCTATGG 110
Query 1324 GAAGTTGATGAAGATGAATGTAGA-AGTGCCTCAAGGA-GCCAAGGAAGTGTGTCCGGAG 1381
||| ||||||||| || |||| || |||||| || | | || ||| || ||| | ||
Sbjct 111 GAAATTGATGAAGTTGGATGT-GACAGTGCCGGAAA-ATGACACGGAGGTTTGTTCAAAG 168
Query 1382 ACAATGGCTTGTCCAATCA---ATGGAGGCCGAATGAGACAAT-CTATGGATGACTCATT 1437
|| ||||||||||| || | |||| || || || || || | | || ||| |||| ||
Sbjct 169 ACGATGGCTTGTCCTATTACTGATGGTGGACGGATCAGGCAGTGC-ATTGAT-ACTCGTT 226
Query 1438 GGTTATGTCTCCGAGCGTTAAGGCTACTTGTGA 1470
||||||||| |||||||| ||||| |||||||
Sbjct 227 GGTTATGTCACCGAGCGTCAAGGCGGCTTGTGA 259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62658453025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5