BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G45860.1

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483726 jgi|Araly1|483726|fgenesh2_kg.4__2786__AT2G45860.1         555    1e-157


> Ahg483726 jgi|Araly1|483726|fgenesh2_kg.4__2786__AT2G45860.1
Length=371

 Score =  555 bits (300),  Expect = 1e-157
 Identities = 349/372 (94%), Gaps = 5/372 (1%)
 Strand=Plus/Plus

Query  12   GGAAAAAATGTCGAAGAAGAACAATTTAGCCAAGAGAAAGAAGCAGCACGAGTACAATCT  71
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GGAAAAAATGTCGAAGAAGAACAATTTAGCCAAGAGAAAGAAGCAGCACGAGTACAATCT  60

Query  72   CCAAAAAGAGAAAGAGTTACAGGACAAGAAGATCAAGAAGCTTCATGCCAACAAGAATAA  131
            ||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct  61   CCAAAAAGAGAAAGAATTACAGGACAAGAAGATTAAGAAGCTTCATGCGAACAAGAACAA  120

Query  132  GATGAAAGTTGATGGAAGTGGGAAGAAGAAGAAAGGTGGATTTTCTGTTGGCAAGAAGAA  191
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GATGAAAGTTGATGGAAGTGGGAAGAAGAAGAAAGGTGGATTTTCTGTTGGCAAGAAGAA  180

Query  192  ATTAAAGACAAAACTGACTCCAACTGCTAAAGCTAAAGCTGCTCAGGCAATGGAGCTAGA  251
            ||| ||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  181  ATTGAAGACGAAATTGACTCCAGCTGCTAAAGCTAAAGCTGCTCAGGCAATGGAGCTAGA  240

Query  252  CAATTGAC-AAGGAACTTC-GttttttttCACTTGTATGTAAAATTGTTCTTCATTGATC  309
            |||||||| ||||||| || ||||| ||||||||||||||||| | ||||||||||||||
Sbjct  241  CAATTGACCAAGGAACCTCAGTTTTCTTTCACTTGTATGTAAACT-GTTCTTCATTGATC  299

Query  310  TTCGTCTTTACTTTGGAGAAATC-ATGTTGAAGCTAGCTTCTTCTTATAGGTTAAACTCT  368
            || |||||||||||| ||||||  | |||||| ||| |||||| |||||||||||||| |
Sbjct  300  TTTGTCTTTACTTTGAAGAAATTTA-GTTGAATCTATCTTCTTATTATAGGTTAAACTTT  358

Query  369  TATGTATCACTC  380
            ||||||||||||
Sbjct  359  TATGTATCACTC  370



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14766212943


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5