BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45870.1
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483727 jgi|Araly1|483727|fgenesh2_kg.4__2787__AT2G45870.1 2056 0.0
> Ahg483727 jgi|Araly1|483727|fgenesh2_kg.4__2787__AT2G45870.1
Length=1304
Score = 2056 bits (1113), Expect = 0.0
Identities = 1241/1304 (95%), Gaps = 3/1304 (0%)
Strand=Plus/Plus
Query 1 TCCCTAACCCTAAACCTCGATTTTCCCGCCCAAAATGTATCAGTCAATGAACCTATCTTT 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 TCCCTAACCCTAAACCTCGATTTTCCCGCCCAAAATGTATCAGTCCATGAACCTATCTTT 60
Query 61 TTCTTCTAACTTTACCAACCTATCCTTTCTCAAACCACGATTATACTCCGGAATCTCCGC 120
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TTCTTCTAACTTTACCAACCGATCCTTTCTCAAACCACGATTATGCTCCGGAATCTCCGC 120
Query 121 CAGAGCTCCCAAATCCCTACATTTCAAATTCAATCCTTCCTGCGTCTCCTCCGGCCCCAA 180
|||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| ||||
Sbjct 121 CAGAGCTCCCAAATCCCTCCATTTCAAATTCAATCCTTCATGCCTCTCCTCCGGCTCCAA 180
Query 181 ATCCGACGATTCACCTCTATCCGAGAAGCTCATTTCGCTGCTTAAAGCTGTCCCAAACTG 240
||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 181 ATCCGACGATTCACCTCTATCCGAGAAGCTCATTTCGCTTCTCAAAGCTGTCCCTAACTG 240
Query 241 GTCTGACGGTATCAAAGAGAGACGGATGCAGCAGAAACGATCTCTCTACACTCACGAGAA 300
||| ||||| |||||||||||||||||| |||||| ||| ||||||||||||||||||||
Sbjct 241 GTCAGACGGCATCAAAGAGAGACGGATGGAGCAGAGACGCTCTCTCTACACTCACGAGAA 300
Query 301 TTGGGTCAGACACAGAAGCTCTCTTCGCCATCTCCGTCACGTATCCTCGAGCCCATCTTC 360
||||||||||||||||||||||||||||||||| ||||||||||| ||||| || || ||
Sbjct 301 TTGGGTCAGACACAGAAGCTCTCTTCGCCATCTGCGTCACGTATCTTCGAGTCCGTCCTC 360
Query 361 ACGCGTTATACTGTCTTTGATTCCGCCTGTTTTCTTCTTCACCACCGTCGCGATCCTGAT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 ACGCGTTATACTGTCTTTGATTCCGCCTGTTTTCTTCTTCACCACCGTCGCGTTCCTGAT 420
Query 421 CGCCGGCTATAACTCCGCCGTGGATTTGGACTGGTTGCCTGATTTCTTCCCTGTACTTCG 480
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 421 CGCCGGCTATAACTCCGCCGTGGATTTGGACTGGTTGCCTGATTTCTTCCCCGTCCTTCG 480
Query 481 AGCTTCTCCTCTACCGTATCAGCTTACGGCTCCGGCTTTAGCTCTGCTTCTAGTGTTTCG 540
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 AGCTTCTCCTCTTCCGTATCAGCTTACGGCTCCGGCTTTAGCTCTGCTTCTGGTGTTTCG 540
Query 541 CACTGAGGCTTCTTATTCAAGGTTTGAACAAGGAAGGAAAGCTTGGGTTAAGATCATTAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CACTGAGGCTTCTTATTCAAGGTTTGAACAAGGAAGGAAAGCTTGGGTTAAGATCATTAG 600
Query 601 TGGAACCAATGATTTAGCTAGGCTAGTTATTTCTTCTGTTCATGGCTCCGGTGATGAATT 660
|||||||||||||||||||||| |||| |||||||| ||||| ||||||||||||||| |
Sbjct 601 TGGAACCAATGATTTAGCTAGGTTAGTCATTTCTTCCGTTCACGGCTCCGGTGATGAAAT 660
Query 661 GATCATCAGAGATGCGCTTTTGCGTTACATTGTTGCTTTCCCTGTGGCGCTTAAG-T--G 717
| |||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 661 GGTCATTAGAGATGCGCTTTTGCGTTACATTGTTGCTTTCCCTGTGGCGCTTAAGGTTTG 720
Query 718 CCATGTGATTTATGGTTCAGATATTGCTAGTGATCTCAAGAATGTGATAGAAGTAGATGA 777
||||| |||||||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct 721 TCATGTAATTTATGGTTCAGATATTGCTAATGATCTCCAGAATGTGATAGAAGCAGATGA 780
Query 778 TCTGTCTTTGATTCTTCAATCCAAGCATCGTCCACGTTGTGTCATTCAATTCATTTCTCA 837
||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct 781 TCTGTCTTTGATTCTTCAATCGAAGCATCGTCCTCGTTGTGTCATTCAATTCATCTCTCA 840
Query 838 GAGCCTTCAGCTGCTGAATTTGGATAGTACAAAGATAGATATGTTGGAAACAAAGATGAT 897
||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 841 GAGTCTTCAGCTGCTGAATTTGGACAGTACAAAGATAGATATGTTGGAATCAAAGATGAT 900
Query 898 GCAATTACAGGAAGGAATTGGTGTATGTGAACAACTAATGGGAATTCCGATTCCACTTTC 957
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 901 GCAATTACAGGAAGGAATTGGTGTATGTGAACAACTGATGGGCATCCCGATTCCACTTTC 960
Query 958 CTACACACGACTAACGTCGAGGTTCTTAGTCTTATGGCATCTAACACTCCCTGTTATTCT 1017
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 961 CTACACACGACTAACGTCGAGGTTCTTAGTCTTATGGCATCTTACGCTCCCTGTTATTCT 1020
Query 1018 CTGGGATGATTGCCACTGGAATGTAGTCCCTGCTACTTTCATCAGTGCTGCCTCTCTCTT 1077
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1021 CTGGGATGATTGCCACTGGAATGTAGTTCCTGCTACTTTCATCAGCGCTGCATCTCTCTT 1080
Query 1078 CTGCATTGAAGAAGTGGGTGTTCTTATAGAGGAGCCATTTTCAATGCTAGCTTTAGATGA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1081 CTGCATTGAAGAAGTGGGTGTTCTTATAGAGGAGCCATTTTCAATGCTAGCTTTAGACGA 1140
Query 1138 GCTATGTGCTATGGTGCTTAGTAACAGTGATGAAGCTGTTGAATCCAAAGAGGTCATACG 1197
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1141 GCTATGTGCTATGGTGCTTAGTAATAGTGATGAAGCTGTTGAATCCAAAGAGGTCATACG 1200
Query 1198 CAATCGAATCATCGCAAAGAAAAGGATCCTTGAAATTAAGCACTCATCAAATGGTTGGCA 1257
|||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1201 CAATCGGATCATAGCAAAGAAAAGGATCCGTGAAATTAAGCACTCATCAAATGGTTGGCA 1260
Query 1258 TAAATCTTGAAGTAATGGATGCCAATATACTCTGTGTGATGGCT 1301
| ||||||||||||||| ||| ||||||||||||| ||||||||
Sbjct 1261 TCAATCTTGAAGTAATGAATGACAATATACTCTGTCTGATGGCT 1304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48759210843
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5