BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G45880.1 Length=2855 Score E Sequences producing significant alignments: (Bits) Value Ahg346398 jgi|Araly1|346398|fgenesh1_pg.C_scaffold_4002740 3369 0.0 Ahg887754 jgi|Araly1|887754|Al_scaffold_0371_3 869 0.0 Ahg952093 jgi|Araly1|952093|scaffold_37100004.1 313 6e-84 Ahg935552 jgi|Araly1|935552|scaffold_403540.1 307 3e-82 Ahg935489 jgi|Araly1|935489|scaffold_403477.1 73.1 1e-11 Ahg935487 jgi|Araly1|935487|scaffold_403475.1 73.1 1e-11 > Ahg346398 jgi|Araly1|346398|fgenesh1_pg.C_scaffold_4002740 Length=2034 Score = 3369 bits (1824), Expect = 0.0 Identities = 1964/2032 (97%), Gaps = 7/2032 (0%) Strand=Plus/Plus Query 624 ATGGCGACGGATATGCATAAACTGCTTGGAACTAGTGAAGAGGATGATGACGAAGAAATG 683 ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 1 ATGGCAACGGATATGCAGAAACTGCTTGGAACTAGTGAAGAGGATGATGATGAAGAAATG 60 Query 684 GACATGGATGTGAAGGAAGAAGATGATGGAGACCGACGAAATAGAGACAAACACGCAGCT 743 || |||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| Sbjct 61 GATATGGATGTGAAGGAAGAAGATGATGGAGACCGACGAAATAGAGACACACGCGCTGCT 120 Query 744 TCAGGCAGTAGTAGTAATGACGAGTTTATGTTTCAGCAGTCAATGCAAGATCAAGTGGGC 803 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCAGGC---AGTAGTAATGATGAGTTTATGTTTCAGCAGTCAATGCAAGATCAAGTGGGC 177 Query 804 ACTCCTGGGGGAGGAGGAAGTCGCAGAAGTAGACCGCTTGAAGAGAAGGAGCGAACTAAG 863 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 ACTCCTGGGGGAGGAGGAAGTCGCAGAAGTAGACCGCTTGAAGAGAAGGAGCGAACTAAG 237 Query 864 TTGAGAGAGCGCCATCGAAGGGCTATAACTGCAAGGATACTAGGCGGGTTACGAAGGCAT 923 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 238 TTAAGAGAGCGCCATCGAAGGGCTATTACTGCAAGGATACTAGGCGGGTTACGAAGGCAT 297 Query 924 GGGAATTATAACCTGAGAGTTAGAGCTGATATTAACGATGTTATCGCGGCTTTGGCAAGG 983 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 GGGAATTATAATCTCAGAGTTAGAGCTGATATTAACGATGTTATCGCGGCTTTGGCAAGG 357 Query 984 GAAGCTGGATGGGTTGTTCTTCCTGATGGAACTACTTTTCCATCCAAATCTCAGGGGACA 1043 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 358 GAAGCTGGATGGGTTGTTCTTCCTGATGGAACTACTTTTCCAGCCAAATCTCAGGGGACA 417 Query 1044 AAGCCTACTGGTGGTTCTTCTGCGGTTGCGGCAGGTTCATCAGCTTCTCACATTGCATCA 1103 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 418 AAGCCTACTGGTGGTTCTTCTGCGGTTGCTGCAGGTTCATCAGCTTCTCACATTGCGTCA 477 Query 1104 CAGCAAACCTC-ACCTCCTGCTCTTAGAGTGGTATCATCTGGGCTTAGAAGCCCAGTGGA 1162 ||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 478 CAGCAAACCTCTA-CTCCTGCTCTTAGAGTGGTATCATCTGGGCGTAGAAGCCCAGTGGA 536 Query 1163 ACTCAGCTCTTGCCGTATGAAAGGTGTTTTCACACCCGCTCCATCACCGTATGATATGCT 1222 ||||||| |||||||||||||||||||||||||||||||| |||| || || |||| | Sbjct 537 ACTCAGCGCTTGCCGTATGAAAGGTGTTTTCACACCCGCTTCATCGCCATACGATAAATT 596 Query 1223 CCCAATC-CAATCTCCAGAACTGGTTGGCAGTGTAAATAAGGCTGAGGGGCTTGTTGGTT 1281 ||||| | |||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 597 CCCAA-CTCAATCTCCAGAACTGGTTGGTAGTGTCAATAAGGCTGAGGGGCTTGTTGGTT 655 Query 1282 GTTCAGTCGATGTTATCAACTCTAAACAAATTCTCGAGATTCCTCCAAATCTGACGGAGC 1341 ||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |||| Sbjct 656 GTTCAGTTGATGTTATCAACTCTAAACAGATTCTCGATATTCCTCCAAATCTGACAGAGC 715 Query 1342 AAGATTTCTCTGGCACTCCTTATGTTCCGGTTTATGTGATGTTACCACTTGGGGTTATCA 1401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 AAGATTTCTCTGGCACTCCTTATGTTCCGGTTTATGTGATGTTACCACTTGGGGTTATCA 775 Query 1402 ATATGAAGTGTGAATTGGCTGATCGAGATGGACTGCTAAAGCACTTACGAATATTGAAAT 1461 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 776 ATATGAAGTGTGAATTGGCTGATCGAGATGGACTGGTAAAGCACTTAAGAATATTGAAAT 835 Query 1462 CAATCCATGTTGATGGGGTTAAAGTGGATTGTTGGTGGGGAATAGTTGAGGGTCATTCCC 1521 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 836 CAATCCATGTCGATGGGGTTAAAGTGGATTGTTGGTGGGGAATAGTTGAGGGTCATTCCC 895 Query 1522 CCCAGGAGTATAATTGGACTGGTTACAGGCAGCTTTTTCAGATGGTCCGCGATCTTAATC 1581 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 896 CCCAGGAGTATAATTGGACTGGTTATAGGCAGCTTTTTCAGATGGTCCGCGATCTTAATC 955 Query 1582 TTAAGATACAGGTTCTAATGTCCTTTCATGAATGTGGAGGCAATGTTGGTGATGATGTTT 1641 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 956 TTAAGATACAGGTTCTAATGTCCTTTCATGAATGTGGAGGCAATGTTGGTGATGATGTTT 1015 Query 1642 GCATCCCACTTCCTCATTGGGTGGCAGAAATAGGACGAACCAATCCGGACATATATTTCA 1701 |||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 1016 GCATCCCACTTCCTCACTGGGTGGCAGAAATAGGGCGAACCAATCCTGACATATATTTCA 1075 Query 1702 CTGATAGAGAGGGAAGACGAAACCCAGAATGCCTTTCTTGGGGTATTGACAAGGAACGTA 1761 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1076 CTGATAGAGAGGGAAGACGAAACCCTGAATGCCTTTCTTGGGGTATTGACAAGGAACGTA 1135 Query 1762 TTTTAAGAGGCAGAACTGCACTTGAGGTGTACTTTGATTACATGAGAAGTTTTCGGATAG 1821 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1136 TTTTAAGAGGCAGGACTGCACTTGAGGTGTACTTTGATTACATGAGAAGTTTTCGGATAG 1195 Query 1822 AACTTGCAGAGTTTCTAGAGGATGGTGTAATATCTATGGTTGAAATTGGACTAGGCCCCT 1881 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1196 AACTTGCAGAGTTTCTAGAGGATGGTGTAATATCTATGGTTGAAATTGGACTAGGCCCCT 1255 Query 1882 GTGGAGAGTTACGGTACCCTTCTTGTCCCATAAAACACGGGTGGCGATATCCAGGTGTTG 1941 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 1256 GTGGAGAGTTACGGTATCCTTCTTGTCCCATAAAACACGGGTGGCGATACCCAGGTGTTG 1315 Query 1942 GAGAGTTTCAGTGTTATGACAAGTATCTCTCGAAGAGCCTGAGAAAGGCAGCAGAATCAA 2001 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1316 GAGAGTTTCAGTGTTATGACAAGTATCTCTCGAAGAGCCTGAGAAAGGCAGCAGAATCAA 1375 Query 2002 GGGGGCACCTGTTTTGGGCTCGAGGCCCAGATAACACCGGCTCCTACAATTCTCAGCCGC 2061 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1376 GGGGGCACCTGTTTTGGGCTCGAGGCCCAGATAACACCGGCTCCTACAATTCCCAGCCGC 1435 Query 2062 AGGGAACCGGTTTCTTCTGTGATGGAGGTGACTACGATGGCCTCTATGGAAGATTCTTTC 2121 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1436 AGGGAACCGGTTTCTTCTGTGATAGAGGTGACTACGATGGCCTCTATGGAAGATTCTTTC 1495 Query 2122 TCAAATGGTACTCACAGGTTTTGATAGACCATGCTGACCAAATCCTCTGTCTCGCTAAAC 2181 ||| |||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 1496 TCACATGGTATTCACAGGTTTTGATAGATCATGCTGACCAAATCCTCTCTCTCGCTAAAC 1555 Query 2182 TAGTCTTCGACAGTAGCTGCATTGCAGCAAAGCTCCCAGACGTCCACTGGTGGTACAGAA 2241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1556 TAGTCTTCGACAGTAGCTGCATTGCAGCAAAGCTCCCAGACGTCCACTGGTGGTACAGAA 1615 Query 2242 CAGCAAGCCATGCCGCTGAGCTAACCGCTGGATTCTACAACCCGAGCAACCGAGATGGTT 2301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1616 CAGCAAGCCATGCCGCTGAGCTAACCGCTGGATTCTACAACCCGAGCAACCGAGATGGTT 1675 Query 2302 ATTCTGCAATTGCATCTACACTTAAGAAGCATGGTGCCACTCTGAGTTTTGTATCCGGAG 2361 || ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 1676 ATGCTGCAATTGCATCTACACTCAAGAAGCATGGTGCCACTCTAAGTTTTGTATCCGGAG 1735 Query 2362 AAGTGCAAGTTCTAAACCGTCCAGATGATTTCTCAGGAGCATTAGGAGAACCTGAGGCAG 2421 |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 1736 AAGTGCAAGTTCTAAACCGTTCGGATGATTTCTCAGGAGCATTAGGAGAACCTGAGGCAG 1795 Query 2422 TAGCTTGGCAGGTATTAAACGCTGCTTGGGACAGCGGTACACCGGTTGCTCGAGAGAACT 2481 ||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 1796 TAGCTTGGCAGGTGTTAAACGCTGCGTGGGACAGCGATACACCGGTTGCTCGAGAGAACT 1855 Query 2482 CGCTTGCTTGCCATGATAGAGTTGGTTATAACAAAATGTTAGAAAGCGTTAAGTTTCGGA 2541 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1856 CGCTTCCTTGCCATGATAGAGTTGGGTATAACAAAATGTTAGAAAGCGTTAAGTTTCGGA 1915 Query 2542 ACGATCCAGATAGAAAACATTTGTCATCATTTGCCTATAGTAGACTCGTCCCAGCTCTCA 2601 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1916 ACGATCCAGATAGAAGGCATTTGTCATCATTTGCCTATAGTAGACTCGTCCCAGCTCTCA 1975 Query 2602 TGGAAGGACATAACATTGTCGAATTTGAGCGGTTTGTCAAGAAGTTGCATGG 2653 ||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 1976 TGGAAGGACATAACATTGTCGAATTTGAGCGGTTTGTGAAGAAATTGCATGG 2027 > Ahg887754 jgi|Araly1|887754|Al_scaffold_0371_3 Length=870 Score = 869 bits (470), Expect = 0.0 Identities = 520/544 (96%), Gaps = 4/544 (1%) Strand=Plus/Plus Query 948 GCTGATATTAACGATGTTATCGCGGCTTTGGCAAGGGAAGCTGGATGGGTTGTTCTTCCT 1007 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 283 GCTGATATTAACGATGTTATCGCGGCTTTGGCAAGGGAAGCTGGATGGGTTGTTCTTCCT 342 Query 1008 GATGGAACTACTTTTCCATCCAAATCTCAGGGGACAAAGCCTACTGGTGGTTCTTCTGCG 1067 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 343 GATGGAACTACTTTTCCAGCCAAATCTCAGGGGACAAAGCCTACTGGTGGTTCTTCTGCG 402 Query 1068 GTTGCGGCAGGTTCATCAGCTTCTCACATTGCATCACAGCAAACCTC-ACCTCCTGCTCT 1126 ||||| |||||||||||||||||||||||||| |||||||||||||| | |||||||||| Sbjct 403 GTTGCTGCAGGTTCATCAGCTTCTCACATTGCGTCACAGCAAACCTCTA-CTCCTGCTCT 461 Query 1127 TAGAGTGGTATCATCTGGGCTTAGAAGCCCAGTGGAACTCAGCTCTTGCCGTATGAAAGG 1186 |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 462 TAGAGTGGTATCATCTGGGCGTAGAAGCCCAGTGGAACTCAGCGCTTGCCGTATGAAAGG 521 Query 1187 TGTTTTCACACCCGCTCCATCACCGTATGATATGCTCCCAATC-CAATCTCCAGAACTGG 1245 |||||||||||||||| |||| || || ||||| |||||| | |||||||||||||||| Sbjct 522 TGTTTTCACACCCGCTTCATCGCCATACGATATATTCCCAA-CTCAATCTCCAGAACTGG 580 Query 1246 TTGGCAGTGTAAATAAGGCTGAGGGGCTTGTTGGTTGTTCAGTCGATGTTATCAACTCTA 1305 |||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 581 TTGGTAGTGTCAATAAGGCTGAGGGGCTTGTTGGTTGTTCAGTTGATGTTATCAACTCTA 640 Query 1306 AACAAATTCTCGAGATTCCTCCAAATCTGACGGAGCAAGATTTCTCTGGCACTCCTTATG 1365 |||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 641 AACAGATTCTCGATATTCCTCCAAATCTGACAGAGCAAGATTTCTCTGGCACTCCTTATG 700 Query 1366 TTCCGGTTTATGTGATGTTACCACTTGGGGTTATCAATATGAAGTGTGAATTGGCTGATC 1425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 701 TTCCGGTTTATGTGATGTTACCACTTGGGGTTATCAATATGAAGTGTGAATTGGCTGATC 760 Query 1426 GAGATGGACTGCTAAAGCACTTACGAATATTGAAATCAATCCATGTTGATGGGGTTAAAG 1485 ||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 761 GAGATGGACTGGTAAAGCACTTAAGAATATTGAAATCAATCCATGTCGATGGGGTTAAAG 820 Query 1486 TGGA 1489 |||| Sbjct 821 TGGA 824 Score = 453 bits (245), Expect = 3e-126 Identities = 273/286 (95%), Gaps = 3/286 (1%) Strand=Plus/Plus Query 624 ATGGCGACGGATATGCATAAACTGCTTGGAACTAGTGAAGAGGATGATGACGAAGAAATG 683 ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 1 ATGGCAACGGATATGCAGAAACTGCTTGGAACTAGTGAAGAGGATGATGATGAAGAAATG 60 Query 684 GACATGGATGTGAAGGAAGAAGATGATGGAGACCGACGAAATAGAGACAAACACGCAGCT 743 || |||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| Sbjct 61 GATATGGATGTGAAGGAAGAAGATGATGGAGACCGACGAAATAGAGACACACGCGCTGCT 120 Query 744 TCAGGCAGTAGTAGTAATGACGAGTTTATGTTTCAGCAGTCAATGCAAGATCAAGTGGGC 803 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCAGGC---AGTAGTAATGATGAGTTTATGTTTCAGCAGTCAATGCAAGATCAAGTGGGC 177 Query 804 ACTCCTGGGGGAGGAGGAAGTCGCAGAAGTAGACCGCTTGAAGAGAAGGAGCGAACTAAG 863 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 ACTCCTGGGGGAGGAGGAAGTCGCAGAAGTAGACCGCTTGAAGAGAAGGAGCGAACTAAG 237 Query 864 TTGAGAGAGCGCCATCGAAGGGCTATAACTGCAAGGATACTAGGCG 909 || ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 238 TTAAGAGAGCGCCATCGAAGGGCTATTACTGCAAGGATACTAGGCG 283 > Ahg952093 jgi|Araly1|952093|scaffold_37100004.1 Length=323 Score = 313 bits (169), Expect = 6e-84 Identities = 201/215 (93%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 1 GCCAAGCCTTAGCTTCACACACTCCTCTTTCTCTCAGACACGCTCGAGCGCTACACACGC 60 |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 111 GCCAAGCCTTTGCTTCACACACTCCTCTTTCTCCCAGACACGCTCGAGCGCTACACACGC 170 Query 61 GCGAAAG-CTCGTCTTCCAA-T-TCACGCTGCACGCTCCTTCACGCG-CTTCCTCCATCT 116 | ||||| |||||||||||| | |||||||||||||||||||||||| ||| ||| |||| Sbjct 171 GTGAAAGCCTCGTCTTCCAATTCTCACGCTGCACGCTCCTTCACGCGCCTT-CTCTATCT 229 Query 117 CACGGCCAGATCCG-CCTCTTTTCACCCGCCGGAGATCCACCGTCTTCTTCTCCTCTCTC 175 |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 230 CACGGCCAGATCCGCCCT-TTTTCACCCGCCGGAGATCCACCGTCTTCTTCTCCTCTCTC 288 Query 176 TTGGTTTCGCTGACGGCGACAGAGGGGGAAACCTT 210 ||||||||||||||||||||||| ||||| |||| Sbjct 289 TTGGTTTCGCTGACGGCGACAGACTGGGAATCCTT 323 > Ahg935552 jgi|Araly1|935552|scaffold_403540.1 Length=323 Score = 307 bits (166), Expect = 3e-82 Identities = 200/215 (93%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 1 GCCAAGCCTTAGCTTCACACACTCCTCTTTCTCTCAGACACGCTCGAGCGCTACACACGC 60 |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 111 GCCAAGCCTTTGCTTCACACACTCCTCTTTCTCCCAGACACGCTCGAGCGCTACACACGC 170 Query 61 GCGAAAG-CTCGTCTTCCAA-T-TCACGCTGCACGCTCCTTCACGCG-CTTCCTCCATCT 116 | ||||| |||||||||||| | |||||||||||||||||||||||| ||| ||| |||| Sbjct 171 GTGAAAGCCTCGTCTTCCAATTCTCACGCTGCACGCTCCTTCACGCGCCTT-CTCTATCT 229 Query 117 CACGGCCAGATCCG-CCTCTTTTCACCCGCCGGAGATCCACCGTCTTCTTCTCCTCTCTC 175 |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct 230 CACGGCCAGATCCGCCCT-TTTTCACCCGCCGGAGATCTACCGTCTTCTTCTCCTCTCTC 288 Query 176 TTGGTTTCGCTGACGGCGACAGAGGGGGAAACCTT 210 ||||||||||||||||||||||| ||||| |||| Sbjct 289 TTGGTTTCGCTGACGGCGACAGACTGGGAATCCTT 323 > Ahg935489 jgi|Araly1|935489|scaffold_403477.1 Length=1282 Score = 73.1 bits (39), Expect = 1e-11 Identities = 41/42 (98%), Gaps = 0/42 (0%) Strand=Plus/Minus Query 2301 TATTCTGCAATTGCATCTACACTTAAGAAGCATGGTGCCACT 2342 ||| |||||||||||||||||||||||||||||||||||||| Sbjct 136 TATGCTGCAATTGCATCTACACTTAAGAAGCATGGTGCCACT 95 > Ahg935487 jgi|Araly1|935487|scaffold_403475.1 Length=1270 Score = 73.1 bits (39), Expect = 1e-11 Identities = 41/42 (98%), Gaps = 0/42 (0%) Strand=Plus/Minus Query 2301 TATTCTGCAATTGCATCTACACTTAAGAAGCATGGTGCCACT 2342 ||| |||||||||||||||||||||||||||||||||||||| Sbjct 124 TATGCTGCAATTGCATCTACACTTAAGAAGCATGGTGCCACT 83 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 107757303105 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5