BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45890.1
Length=1585
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497411 jgi|Araly1|497411|fgenesh2_kg.371__2__AT2G45890.1 2338 0.0
Ahg483729 jgi|Araly1|483729|fgenesh2_kg.4__2789__AT2G45890.1 2004 0.0
> Ahg497411 jgi|Araly1|497411|fgenesh2_kg.371__2__AT2G45890.1
Length=1522
Score = 2338 bits (1266), Expect = 0.0
Identities = 1377/1430 (96%), Gaps = 9/1430 (1%)
Strand=Plus/Plus
Query 61 AATCGTGATGGAGAGTTC-TTCGAATTCCGACCAAAATGAGGGAACTCCGACGAGCTCTG 119
|||||||||||||||||| || ||||||||| ||||| ||||||||||||||||||||||
Sbjct 40 AATCGTGATGGAGAGTTCATT-GAATTCCGAACAAAACGAGGGAACTCCGACGAGCTCTG 98
Query 120 TTTCTTCGCCGTACCGGAGAACATACTCAGATATCTCCGGATTATCTCACCGGTTCGACG 179
|||||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 99 TTTCTTCGCCATATCGGAGAACATACTCTGATATCTCCGGATTATCCCACCGGTTCGACG 158
Query 180 TTCAGAGCTTTTATAACCGGCCGTCAAACACTAACGCTGTTGTCTTGAGTGGCCATGAAG 239
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 159 TTCAGAATTTTTATAACCGGCCGTCGAACACTAACGCTGTTGTCTTGAGTGGCCATGAAG 218
Query 240 AAGATGTCTCCGAAGACGCCGAGGAACCAAAAGATGATGTCGTCAACGACGTCCACGGAG 299
||||||||||||||||||||| |||||||||||||||||||||| | | | ||||||
Sbjct 219 AAGATGTCTCCGAAGACGCCGTGGAACCAAAAGATGATGTCGTC-A--A--T-GACGGAG 272
Query 300 ATGGAGACGAAGAAGACAGCGACATTGATTCTGCAGAAGATGCAGAGCTAGAGATGATGA 359
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 ATGGAGACGAGGAAGACAGCGACATTGATTCTGCAGAAGATGCAGAGCTAGAGATGATGA 332
Query 360 GGGAAAGATTTGCGAAGCTGTTGCTTGGTGAAGACATGTCAGGAAGTGGGAAAGGAGTTT 419
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 333 GAGAAAGATTTGCGAAGCTATTGCTTGGTGAAGACATGTCAGGAAGTGGGAAAGGAGTTT 392
Query 420 GTACTGCTGTTACTGTGTCAAACTCCATAACCAATCTCTATGCGACTGTGTTTGGACAGA 479
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 393 GTACCGCTGTTACTGTCTCAAACTCCATAACCAATCTCTATGCGACTGTGTTTGGACAAA 452
Query 480 GTTTAAGGTTACAACCATTGAGTACAGAGAAGAAAGACTTATGGAAACGAGAGATGAATT 539
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 453 GTTTAAGGTTACAACCATTGAGTACAGAGAAGAAAGAGTTATGGAAGCGAGAGATGAATT 512
Query 540 GTTTCATGTCTATTTGTGATTACATTGTCGAAGTTATTCCAAGATCTCTTGGTACTAACG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 GTTTCATGTCTATTTGTGATTACATTGTCGAAGTTATTCCAAGATCTCTTGGTACTAACG 572
Query 600 TTGAGATAACAGAAACAAAGCTAAGATCTGATATTCTCATGAGTCTTCCTGCTTTGAGAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 TTGAGATAACAGAAACAAAGCTAAGATCTGATATTCTCATGAGTCTTCCTGCTTTGAGAA 632
Query 660 AACTCGATAACATGCTAATGGAAATATTGGATAGTTTTACGGAAAACGAGTTCTGGTATG 719
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 633 AACTCGATAATATGCTAATGGAAATATTGGATAGTTTTACGGAGAACGAGTTCTGGTACG 692
Query 720 TTGAAAGAGGAAGCTCATCGATGAACTCGGGTGGTGGTGGTAGAGATTCAGGAACGTTTA 779
||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||
Sbjct 693 TTGAAAGAGGAAGCTCATCGATGAACTCGAGCGGTGGTGGCAGAGATTCAGGAACGTTTA 752
Query 780 GGAAAGTGGTGGTTCAACGGAAAGACGAGAAATGGTGGCTTCCGGTGCCATGTGTTCCTG 839
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 753 GGAAAGTGGTGGTTCAACGGAAAGACGAGAAGTGGTGGCTTCCGGTGCCATGTGTTCCTG 812
Query 840 CTGAAGGTTTATCTGAAGAAGAACGAAAGCATTTGCGTCACAAACGCGATTGTGCCAGTC 899
||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 813 CTGAAGGTTTATCGGAAGAAGAACGAAAGAATTTGCGTCACAAACGTGATTGTGCCAGTC 872
Query 900 AGATACATAAAGCAGCATTGGCCATTAACGATTCCACTCTTAATGACATGGATATTCCTG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 AGATACATAAAGCAGCATTGGCCATTAACGATTCCACTCTTAATGACATGGATATTCCTG 932
Query 960 ATTCTTACCTCACCACTCTTCCAAAGAGTGGGAAAGCAAGTGTAGGAGACGTGATTTACA 1019
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 933 ATTCTTATCTCACCACTCTTCCAAAGAGTGGGAAAGCAAGTGTAGGAGACGTGATATACA 992
Query 1020 AGCAACTGTGCACAGCCGAGAAGTTTTATCCCGACCAGCTTCTCGACATCTTGAAGATCA 1079
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 993 AGCAACTGTGCACTGCCGAGAAGTTTTATCCTGACCAGCTTCTCGACATCTTGAAGATAA 1052
Query 1080 CATCTGAGCATGAGGCGCTTGAGCTCGCCGACAAAGTTGAGGCTTCACTAGTTACGTGGA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 CATCTGAGCATGAGGCGCTTGAGCTCGCCGACAAAGTTGAGGCTTCACTAGTTACGTGGA 1112
Query 1140 GGCGTAAGACTGGAGGATTGACTCACTCTAAGTCCTCATGGGACATGATGAAAGATATCA 1199
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1113 GGCGTAAGACTGGAGGATTGACTCACTCCAAGTCCTCATGGGACATGATGAAAGATATCG 1172
Query 1200 GTGGCGATGCAGATCGTGGCAATGACAAGAACCACATACTTGCGGCTCGAGCCAGGAGCT 1259
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1173 GTGGCGATGCAGATCGTGGCAATGACAAGAACCACATTCTTGCGGCTCGAGCAAGGAGCT 1232
Query 1260 TACTCTTCTGTCTGAAACAGAGATACCCTGAACTTTCTCAGACCTCACTTGACATCTGCA 1319
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 TACTTTTCTGTCTGAAGCAGAGATACCCTGAACTTTCTCAGACCTCACTTGACATCTGCA 1292
Query 1320 AGATTCAGTTTAACCGAGATGTGGGAAAGGCGGTATTGGAGAGCTATTCAAGGGTTTTAG 1379
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1293 AGATTCAGTTTAACCGAGATGTTGGAAAGGCGGTATTGGAGAGCTATTCGAGGGTTTTAG 1352
Query 1380 AAGGTTTGGCTTATAATGTTGTGTCGTGGATTGATGATGTTCTTTACGTCGACAGAACAG 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 AAGGTTTGGCTTATAATGTTGTGTCGTGGATTGATGATGTTCTTTACGTCGACAGAACAG 1412
Query 1440 TGAGAAACAGAGATGATTAGGGTTTTTCATACTGAGTTTTTTCTTTTGAG 1489
|||| |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1413 TGAGGAACAGAGAGGATTAGGGTTTT-CATACTGAGTTTTTTCTTTTGAG 1461
> Ahg483729 jgi|Araly1|483729|fgenesh2_kg.4__2789__AT2G45890.1
Length=1498
Score = 2004 bits (1085), Expect = 0.0
Identities = 1180/1226 (96%), Gaps = 6/1226 (0%)
Strand=Plus/Plus
Query 101 GGAACTCCGACGAGCTCTGTTTCTTCGCCGTACCGGAGAACATACTCAGATATCTCCGGA 160
||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 92 GGAACTCCGACGAGCTCTGTTTCTTCGCCATATCGGAGAACATACTCTGATATCTCCGGA 151
Query 161 TTATCTCACCGGTTCGACGTTCAGAGCTTTTATAACCGGCCGTCAAACACTAACGCTGTT 220
||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 152 TTATCCCACCGGTTCGACGTTCAGAATTTTTATAACCGGCCGTCGAACACTAACGCTGTT 211
Query 221 GTCTTGAGTGGCCATGAAGAAGATGTCTCCGAAGACGCCGAGGAACCAAAAGATGATGTC 280
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 212 GTCTTGAGTGGCCATGAAGAAGATGTCTCCGAAGACGCCGTGGAACCAAAAGATGATGTC 271
Query 281 GTCAACGACGTCCACGGAGATGGAGACGAAGAAGACAGCGACATTGATTCTGCAGAAGAT 340
||| | | | |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 272 GTC-A--A--T-GACGGAGATGGAGACGAGGAAGACAGCGACATTGATTCTGCAGAAGAT 325
Query 341 GCAGAGCTAGAGATGATGAGGGAAAGATTTGCGAAGCTGTTGCTTGGTGAAGACATGTCA 400
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 326 GCAGAGCTAGAGATGATGAGAGAAAGATTTGCGAAGCTATTGCTTGGTGAAGACATGTCA 385
Query 401 GGAAGTGGGAAAGGAGTTTGTACTGCTGTTACTGTGTCAAACTCCATAACCAATCTCTAT 460
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 386 GGAAGTGGGAAAGGAGTTTGTACCGCTGTTACTGTCTCAAACTCCATAACCAATCTCTAT 445
Query 461 GCGACTGTGTTTGGACAGAGTTTAAGGTTACAACCATTGAGTACAGAGAAGAAAGACTTA 520
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 446 GCGACTGTGTTTGGACAAAGTTTAAGGTTACAACCATTGAGTACAGAGAAGAAAGAGTTA 505
Query 521 TGGAAACGAGAGATGAATTGTTTCATGTCTATTTGTGATTACATTGTCGAAGTTATTCCA 580
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 TGGAAGCGAGAGATGAATTGTTTCATGTCTATTTGTGATTACATTGTCGAAGTTATTCCA 565
Query 581 AGATCTCTTGGTACTAACGTTGAGATAACAGAAACAAAGCTAAGATCTGATATTCTCATG 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 AGATCTCTTGGTACTAACGTTGAGATAACAGAAACAAAGCTAAGATCTGATATTCTCATG 625
Query 641 AGTCTTCCTGCTTTGAGAAAACTCGATAACATGCTAATGGAAATATTGGATAGTTTTACG 700
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 626 AGTCTTCCTGCTTTGAGAAAACTCGATAATATGCTAATGGAGATATTGGATAGTTTTACG 685
Query 701 GAAAACGAGTTCTGGTATGTTGAAAGAGGAAGCTCATCGATGAACTCGGGTGGTGGTGGT 760
|| |||||||||||||| |||||||||||||||||||||||||||||| | ||||||||
Sbjct 686 GAGAACGAGTTCTGGTACGTTGAAAGAGGAAGCTCATCGATGAACTCGAGCGGTGGTGGC 745
Query 761 AGAGATTCAGGAACGTTTAGGAAAGTGGTGGTTCAACGGAAAGACGAGAAATGGTGGCTT 820
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 746 AGAGATTCAGGAACGTTTAGGAAAGTGGTGGTTCAACGGAAAGACGAGAAGTGGTGGCTT 805
Query 821 CCGGTGCCATGTGTTCCTGCTGAAGGTTTATCTGAAGAAGAACGAAAGCATTTGCGTCAC 880
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 806 CCGGTGCCATGTGTTCCTGCTGAAGGTTTATCGGAAGAAGAACGAAAGAATTTGCGTCAC 865
Query 881 AAACGCGATTGTGCCAGTCAGATACATAAAGCAGCATTGGCCATTAACGATTCCACTCTT 940
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 AAACGTGATTGTGCCAGTCAGATACATAAAGCAGCATTGGCCATTAACGATTCCACTCTT 925
Query 941 AATGACATGGATATTCCTGATTCTTACCTCACCACTCTTCCAAAGAGTGGGAAAGCAAGT 1000
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 926 AATGACATGGATATTCCTGATTCTTATCTCACCACTCTTCCAAAGAGTGGGAAAGCAAGT 985
Query 1001 GTAGGAGACGTGATTTACAAGCAACTGTGCACAGCCGAGAAGTTTTATCCCGACCAGCTT 1060
|||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 986 GTAGGAGACGTGATATACAAGCAACTGTGCACTGCCGAGAAGTTTTATCCTGACCAGCTT 1045
Query 1061 CTCGACATCTTGAAGATCACATCTGAGCATGAGGCGCTTGAGCTCGCCGACAAAGTTGAG 1120
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 CTCGACGTCTTGAAGATAACATCTGAGCATGAGGCGCTTGAGCTCGCCGACAAAGTTGAG 1105
Query 1121 GCTTCACTAGTTACGTGGAGGCGTAAGACTGGAGGATTGACTCACTCTAAGTCCTCATGG 1180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1106 GCTTCACTAGTTACGTGGAGGCGTAAGACTGGAGGATTGACTCACTCCAAGTCCTCATGG 1165
Query 1181 GACATGATGAAAGATATCAGTGGCGATGCAGATCGTGGCAATGACAAGAACCACATACTT 1240
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1166 GACATGATGAAAGATATCGGTGGCGATGCAGATCGTGGCAATGACAAGAACCACATTCTT 1225
Query 1241 GCGGCTCGAGCCAGGAGCTTACTCTTCTGTCTGAAACAGAGATACCCTGAACTTTCTCAG 1300
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1226 GCGGCTCGAGCAAGGAGCTTACTTTTCTGTCTGAAACAGAGATACCCCGAACTTTCTCAG 1285
Query 1301 ACCTCACTTGACATCTGCAAGATTCA 1326
||||||||||||||||||||||||||
Sbjct 1286 ACCTCACTTGACATCTGCAAGATTCA 1311
Score = 211 bits (114), Expect = 1e-53
Identities = 123/127 (97%), Gaps = 1/127 (1%)
Strand=Plus/Plus
Query 1363 CTATTCAAGGGTTTTAGAAGGTTTGGCTTATAATGTTGTGTCGTGGATTGATGATGTTCT 1422
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 CTATTCGAGGGTTTTAGAAGGTTTGGCTTATAATGTTGTGTCGTGGATTGATGATGTTCT 1371
Query 1423 TTACGTCGACAGAACAGTGAGAAACAGAGATGATTAGGGTTTTTCATACTGAGTTTTTTC 1482
||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||
Sbjct 1372 TTACGTCGACAGAACAGTGAGGAACAGAGAGGATTAGGGTTTT-CATACTGAGTTTTTTC 1430
Query 1483 TTTTGAG 1489
|||||||
Sbjct 1431 TTTTGAG 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59382691955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5