BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G45890.1 Length=1585 Score E Sequences producing significant alignments: (Bits) Value Ahg497411 jgi|Araly1|497411|fgenesh2_kg.371__2__AT2G45890.1 2338 0.0 Ahg483729 jgi|Araly1|483729|fgenesh2_kg.4__2789__AT2G45890.1 2004 0.0 > Ahg497411 jgi|Araly1|497411|fgenesh2_kg.371__2__AT2G45890.1 Length=1522 Score = 2338 bits (1266), Expect = 0.0 Identities = 1377/1430 (96%), Gaps = 9/1430 (1%) Strand=Plus/Plus Query 61 AATCGTGATGGAGAGTTC-TTCGAATTCCGACCAAAATGAGGGAACTCCGACGAGCTCTG 119 |||||||||||||||||| || ||||||||| ||||| |||||||||||||||||||||| Sbjct 40 AATCGTGATGGAGAGTTCATT-GAATTCCGAACAAAACGAGGGAACTCCGACGAGCTCTG 98 Query 120 TTTCTTCGCCGTACCGGAGAACATACTCAGATATCTCCGGATTATCTCACCGGTTCGACG 179 |||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 99 TTTCTTCGCCATATCGGAGAACATACTCTGATATCTCCGGATTATCCCACCGGTTCGACG 158 Query 180 TTCAGAGCTTTTATAACCGGCCGTCAAACACTAACGCTGTTGTCTTGAGTGGCCATGAAG 239 |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 159 TTCAGAATTTTTATAACCGGCCGTCGAACACTAACGCTGTTGTCTTGAGTGGCCATGAAG 218 Query 240 AAGATGTCTCCGAAGACGCCGAGGAACCAAAAGATGATGTCGTCAACGACGTCCACGGAG 299 ||||||||||||||||||||| |||||||||||||||||||||| | | | |||||| Sbjct 219 AAGATGTCTCCGAAGACGCCGTGGAACCAAAAGATGATGTCGTC-A--A--T-GACGGAG 272 Query 300 ATGGAGACGAAGAAGACAGCGACATTGATTCTGCAGAAGATGCAGAGCTAGAGATGATGA 359 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 273 ATGGAGACGAGGAAGACAGCGACATTGATTCTGCAGAAGATGCAGAGCTAGAGATGATGA 332 Query 360 GGGAAAGATTTGCGAAGCTGTTGCTTGGTGAAGACATGTCAGGAAGTGGGAAAGGAGTTT 419 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 333 GAGAAAGATTTGCGAAGCTATTGCTTGGTGAAGACATGTCAGGAAGTGGGAAAGGAGTTT 392 Query 420 GTACTGCTGTTACTGTGTCAAACTCCATAACCAATCTCTATGCGACTGTGTTTGGACAGA 479 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 393 GTACCGCTGTTACTGTCTCAAACTCCATAACCAATCTCTATGCGACTGTGTTTGGACAAA 452 Query 480 GTTTAAGGTTACAACCATTGAGTACAGAGAAGAAAGACTTATGGAAACGAGAGATGAATT 539 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 453 GTTTAAGGTTACAACCATTGAGTACAGAGAAGAAAGAGTTATGGAAGCGAGAGATGAATT 512 Query 540 GTTTCATGTCTATTTGTGATTACATTGTCGAAGTTATTCCAAGATCTCTTGGTACTAACG 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 513 GTTTCATGTCTATTTGTGATTACATTGTCGAAGTTATTCCAAGATCTCTTGGTACTAACG 572 Query 600 TTGAGATAACAGAAACAAAGCTAAGATCTGATATTCTCATGAGTCTTCCTGCTTTGAGAA 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 573 TTGAGATAACAGAAACAAAGCTAAGATCTGATATTCTCATGAGTCTTCCTGCTTTGAGAA 632 Query 660 AACTCGATAACATGCTAATGGAAATATTGGATAGTTTTACGGAAAACGAGTTCTGGTATG 719 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 633 AACTCGATAATATGCTAATGGAAATATTGGATAGTTTTACGGAGAACGAGTTCTGGTACG 692 Query 720 TTGAAAGAGGAAGCTCATCGATGAACTCGGGTGGTGGTGGTAGAGATTCAGGAACGTTTA 779 ||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||| Sbjct 693 TTGAAAGAGGAAGCTCATCGATGAACTCGAGCGGTGGTGGCAGAGATTCAGGAACGTTTA 752 Query 780 GGAAAGTGGTGGTTCAACGGAAAGACGAGAAATGGTGGCTTCCGGTGCCATGTGTTCCTG 839 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 753 GGAAAGTGGTGGTTCAACGGAAAGACGAGAAGTGGTGGCTTCCGGTGCCATGTGTTCCTG 812 Query 840 CTGAAGGTTTATCTGAAGAAGAACGAAAGCATTTGCGTCACAAACGCGATTGTGCCAGTC 899 ||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 813 CTGAAGGTTTATCGGAAGAAGAACGAAAGAATTTGCGTCACAAACGTGATTGTGCCAGTC 872 Query 900 AGATACATAAAGCAGCATTGGCCATTAACGATTCCACTCTTAATGACATGGATATTCCTG 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 873 AGATACATAAAGCAGCATTGGCCATTAACGATTCCACTCTTAATGACATGGATATTCCTG 932 Query 960 ATTCTTACCTCACCACTCTTCCAAAGAGTGGGAAAGCAAGTGTAGGAGACGTGATTTACA 1019 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 933 ATTCTTATCTCACCACTCTTCCAAAGAGTGGGAAAGCAAGTGTAGGAGACGTGATATACA 992 Query 1020 AGCAACTGTGCACAGCCGAGAAGTTTTATCCCGACCAGCTTCTCGACATCTTGAAGATCA 1079 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 993 AGCAACTGTGCACTGCCGAGAAGTTTTATCCTGACCAGCTTCTCGACATCTTGAAGATAA 1052 Query 1080 CATCTGAGCATGAGGCGCTTGAGCTCGCCGACAAAGTTGAGGCTTCACTAGTTACGTGGA 1139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1053 CATCTGAGCATGAGGCGCTTGAGCTCGCCGACAAAGTTGAGGCTTCACTAGTTACGTGGA 1112 Query 1140 GGCGTAAGACTGGAGGATTGACTCACTCTAAGTCCTCATGGGACATGATGAAAGATATCA 1199 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1113 GGCGTAAGACTGGAGGATTGACTCACTCCAAGTCCTCATGGGACATGATGAAAGATATCG 1172 Query 1200 GTGGCGATGCAGATCGTGGCAATGACAAGAACCACATACTTGCGGCTCGAGCCAGGAGCT 1259 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 1173 GTGGCGATGCAGATCGTGGCAATGACAAGAACCACATTCTTGCGGCTCGAGCAAGGAGCT 1232 Query 1260 TACTCTTCTGTCTGAAACAGAGATACCCTGAACTTTCTCAGACCTCACTTGACATCTGCA 1319 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1233 TACTTTTCTGTCTGAAGCAGAGATACCCTGAACTTTCTCAGACCTCACTTGACATCTGCA 1292 Query 1320 AGATTCAGTTTAACCGAGATGTGGGAAAGGCGGTATTGGAGAGCTATTCAAGGGTTTTAG 1379 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 1293 AGATTCAGTTTAACCGAGATGTTGGAAAGGCGGTATTGGAGAGCTATTCGAGGGTTTTAG 1352 Query 1380 AAGGTTTGGCTTATAATGTTGTGTCGTGGATTGATGATGTTCTTTACGTCGACAGAACAG 1439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1353 AAGGTTTGGCTTATAATGTTGTGTCGTGGATTGATGATGTTCTTTACGTCGACAGAACAG 1412 Query 1440 TGAGAAACAGAGATGATTAGGGTTTTTCATACTGAGTTTTTTCTTTTGAG 1489 |||| |||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 1413 TGAGGAACAGAGAGGATTAGGGTTTT-CATACTGAGTTTTTTCTTTTGAG 1461 > Ahg483729 jgi|Araly1|483729|fgenesh2_kg.4__2789__AT2G45890.1 Length=1498 Score = 2004 bits (1085), Expect = 0.0 Identities = 1180/1226 (96%), Gaps = 6/1226 (0%) Strand=Plus/Plus Query 101 GGAACTCCGACGAGCTCTGTTTCTTCGCCGTACCGGAGAACATACTCAGATATCTCCGGA 160 ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||| Sbjct 92 GGAACTCCGACGAGCTCTGTTTCTTCGCCATATCGGAGAACATACTCTGATATCTCCGGA 151 Query 161 TTATCTCACCGGTTCGACGTTCAGAGCTTTTATAACCGGCCGTCAAACACTAACGCTGTT 220 ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 152 TTATCCCACCGGTTCGACGTTCAGAATTTTTATAACCGGCCGTCGAACACTAACGCTGTT 211 Query 221 GTCTTGAGTGGCCATGAAGAAGATGTCTCCGAAGACGCCGAGGAACCAAAAGATGATGTC 280 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 212 GTCTTGAGTGGCCATGAAGAAGATGTCTCCGAAGACGCCGTGGAACCAAAAGATGATGTC 271 Query 281 GTCAACGACGTCCACGGAGATGGAGACGAAGAAGACAGCGACATTGATTCTGCAGAAGAT 340 ||| | | | |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 272 GTC-A--A--T-GACGGAGATGGAGACGAGGAAGACAGCGACATTGATTCTGCAGAAGAT 325 Query 341 GCAGAGCTAGAGATGATGAGGGAAAGATTTGCGAAGCTGTTGCTTGGTGAAGACATGTCA 400 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 326 GCAGAGCTAGAGATGATGAGAGAAAGATTTGCGAAGCTATTGCTTGGTGAAGACATGTCA 385 Query 401 GGAAGTGGGAAAGGAGTTTGTACTGCTGTTACTGTGTCAAACTCCATAACCAATCTCTAT 460 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 386 GGAAGTGGGAAAGGAGTTTGTACCGCTGTTACTGTCTCAAACTCCATAACCAATCTCTAT 445 Query 461 GCGACTGTGTTTGGACAGAGTTTAAGGTTACAACCATTGAGTACAGAGAAGAAAGACTTA 520 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 446 GCGACTGTGTTTGGACAAAGTTTAAGGTTACAACCATTGAGTACAGAGAAGAAAGAGTTA 505 Query 521 TGGAAACGAGAGATGAATTGTTTCATGTCTATTTGTGATTACATTGTCGAAGTTATTCCA 580 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 506 TGGAAGCGAGAGATGAATTGTTTCATGTCTATTTGTGATTACATTGTCGAAGTTATTCCA 565 Query 581 AGATCTCTTGGTACTAACGTTGAGATAACAGAAACAAAGCTAAGATCTGATATTCTCATG 640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 566 AGATCTCTTGGTACTAACGTTGAGATAACAGAAACAAAGCTAAGATCTGATATTCTCATG 625 Query 641 AGTCTTCCTGCTTTGAGAAAACTCGATAACATGCTAATGGAAATATTGGATAGTTTTACG 700 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 626 AGTCTTCCTGCTTTGAGAAAACTCGATAATATGCTAATGGAGATATTGGATAGTTTTACG 685 Query 701 GAAAACGAGTTCTGGTATGTTGAAAGAGGAAGCTCATCGATGAACTCGGGTGGTGGTGGT 760 || |||||||||||||| |||||||||||||||||||||||||||||| | |||||||| Sbjct 686 GAGAACGAGTTCTGGTACGTTGAAAGAGGAAGCTCATCGATGAACTCGAGCGGTGGTGGC 745 Query 761 AGAGATTCAGGAACGTTTAGGAAAGTGGTGGTTCAACGGAAAGACGAGAAATGGTGGCTT 820 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 746 AGAGATTCAGGAACGTTTAGGAAAGTGGTGGTTCAACGGAAAGACGAGAAGTGGTGGCTT 805 Query 821 CCGGTGCCATGTGTTCCTGCTGAAGGTTTATCTGAAGAAGAACGAAAGCATTTGCGTCAC 880 |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 806 CCGGTGCCATGTGTTCCTGCTGAAGGTTTATCGGAAGAAGAACGAAAGAATTTGCGTCAC 865 Query 881 AAACGCGATTGTGCCAGTCAGATACATAAAGCAGCATTGGCCATTAACGATTCCACTCTT 940 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 866 AAACGTGATTGTGCCAGTCAGATACATAAAGCAGCATTGGCCATTAACGATTCCACTCTT 925 Query 941 AATGACATGGATATTCCTGATTCTTACCTCACCACTCTTCCAAAGAGTGGGAAAGCAAGT 1000 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 926 AATGACATGGATATTCCTGATTCTTATCTCACCACTCTTCCAAAGAGTGGGAAAGCAAGT 985 Query 1001 GTAGGAGACGTGATTTACAAGCAACTGTGCACAGCCGAGAAGTTTTATCCCGACCAGCTT 1060 |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 986 GTAGGAGACGTGATATACAAGCAACTGTGCACTGCCGAGAAGTTTTATCCTGACCAGCTT 1045 Query 1061 CTCGACATCTTGAAGATCACATCTGAGCATGAGGCGCTTGAGCTCGCCGACAAAGTTGAG 1120 |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1046 CTCGACGTCTTGAAGATAACATCTGAGCATGAGGCGCTTGAGCTCGCCGACAAAGTTGAG 1105 Query 1121 GCTTCACTAGTTACGTGGAGGCGTAAGACTGGAGGATTGACTCACTCTAAGTCCTCATGG 1180 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1106 GCTTCACTAGTTACGTGGAGGCGTAAGACTGGAGGATTGACTCACTCCAAGTCCTCATGG 1165 Query 1181 GACATGATGAAAGATATCAGTGGCGATGCAGATCGTGGCAATGACAAGAACCACATACTT 1240 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 1166 GACATGATGAAAGATATCGGTGGCGATGCAGATCGTGGCAATGACAAGAACCACATTCTT 1225 Query 1241 GCGGCTCGAGCCAGGAGCTTACTCTTCTGTCTGAAACAGAGATACCCTGAACTTTCTCAG 1300 ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 1226 GCGGCTCGAGCAAGGAGCTTACTTTTCTGTCTGAAACAGAGATACCCCGAACTTTCTCAG 1285 Query 1301 ACCTCACTTGACATCTGCAAGATTCA 1326 |||||||||||||||||||||||||| Sbjct 1286 ACCTCACTTGACATCTGCAAGATTCA 1311 Score = 211 bits (114), Expect = 1e-53 Identities = 123/127 (97%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 1363 CTATTCAAGGGTTTTAGAAGGTTTGGCTTATAATGTTGTGTCGTGGATTGATGATGTTCT 1422 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1312 CTATTCGAGGGTTTTAGAAGGTTTGGCTTATAATGTTGTGTCGTGGATTGATGATGTTCT 1371 Query 1423 TTACGTCGACAGAACAGTGAGAAACAGAGATGATTAGGGTTTTTCATACTGAGTTTTTTC 1482 ||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||| Sbjct 1372 TTACGTCGACAGAACAGTGAGGAACAGAGAGGATTAGGGTTTT-CATACTGAGTTTTTTC 1430 Query 1483 TTTTGAG 1489 ||||||| Sbjct 1431 TTTTGAG 1437 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59382691955 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5