BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45900.1
Length=2163
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483730 jgi|Araly1|483730|fgenesh2_kg.4__2790__AT2G45900.1 1458 0.0
Ahg497410 jgi|Araly1|497410|fgenesh2_kg.371__1__AT2G45900.1 1319 0.0
Ahg907815 jgi|Araly1|907815|Al_scaffold_0002_896 193 6e-48
> Ahg483730 jgi|Araly1|483730|fgenesh2_kg.4__2790__AT2G45900.1
Length=2109
Score = 1458 bits (789), Expect = 0.0
Identities = 884/931 (95%), Gaps = 2/931 (0%)
Strand=Plus/Plus
Query 1229 ACAACCATGAAGAAACAGAGTTTATGCCAGTTCCGGAAGACACTAGGATGGAAGAGGAAG 1288
||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1175 ACAACTATGAAGAAACAGAGTTTATGCCATTTCCGGAAGACACTGGGATGGAAGAGGAAG 1234
Query 1289 AGCAGACTGTTATGGATTCGTTGTCTGAAGCAATTAGCTCTTCCATTATCCAACAAGATG 1348
|| |||||||| | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1235 AGAAGACTGTTCTCGATTCGTTGTCTGAAGAAATTAGCTCTTCCATTATCCAACAAGATG 1294
Query 1349 CATATATTGATGAGGATGAGCACAAACAACTTTTGGAAAAGGAAGTACTCAAAG-AGGGA 1407
||||| |||||||||||||||| || ||||| |||||||||||||||||| | | ||||
Sbjct 1295 CATATGTTGATGAGGATGAGCAGAAGCAACTCTTGGAAAAGGAAGTACTCGACGAAGGG- 1353
Query 1408 CAATCACCGTGTTCTCCACCAAACTCTTCAGTGAGAATGTCTGAATGCCAAGAAAACACC 1467
| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1354 CGATTACCGTGTTCTCCACCAAACTCTTCAGTGAGAATGTCTGAATGCCAAGAAAATACC 1413
Query 1468 ACAGATGTATTGGGAAAGTCAAGTCCTGTATCTGTGCTTGAGCCTTTCTTTACAGATGAT 1527
||||||||||||||||||||||||||||| || || ||||||||| ||||||||||||||
Sbjct 1414 ACAGATGTATTGGGAAAGTCAAGTCCTGTGTCGGTTCTTGAGCCTCTCTTTACAGATGAT 1473
Query 1528 GACACTAGTCCAAACAGCTCCAGGTTCTCTTCAGCCGAAATGCGGATGCAACCACTGTGC 1587
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1474 GACACTAGTCCAAACAGCTCCAGGTTCTCTTCAGCCGAAGTGCGGATGCAACCACTGTGC 1533
Query 1588 ATAAGATTCGACGAACCTGATTTTCCAGGACCGGAGAAAGACAATGATGTCAAAACAAGA 1647
||||||||||||||| |||||| |||| ||||||||||||||||||||| |||||| |||
Sbjct 1534 ATAAGATTCGACGAAGCTGATTCTCCAAGACCGGAGAAAGACAATGATGCCAAAACTAGA 1593
Query 1648 ATGGACGACAAGGAACTGGCACTTGAATACATTCAAGCCGTGGTGAAATCATCAGAGTTG 1707
||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1594 ATGGATGACAAGGAATTGGCACTTGAATACATTCAAGCCGTGGTGAAATCCTCAGAGTTG 1653
Query 1708 AACTGGGAAGAGCTTTTGGCGAGATCTTTTTATTCGGAGAAGATTCTTGAGCAGGCTCTA 1767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1654 AACTGGGAAGAGCTTTTGGCGAGATCTTTTTATTCGGAGAAGATTCTTGAGCAGGCTCTA 1713
Query 1768 ATGGATGACATAGATTTCTGTTCGACAAATCTCTGCAGCGATAAGAAACTCCTTTTTGAC 1827
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1714 ATGGATGACATAGATTTCTGTTCGACAAATCTATGCAGCGATAAGAAACTCCTTTTTGAC 1773
Query 1828 TGTATCAATGAAGTTCTTATGGAGTTTTGTGGACATGGCCCTTGGATTTCATTCGTCAAA 1887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1774 TGTATCAATGAAGTTCTTATGGAGTTTTGTGGACATGGCCCTTGGATTTCATTCGTCAAA 1833
Query 1888 CCTGCAATGCACTTTTTTCCAGACATGGAAAATGCTGTTGAAGTGGTACAAGAAGAAGTT 1947
||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1834 CCTTCAATACGGTTTTTTCCAGACATGGAAAATGCTGTTGAAGTGGTACAAGAAGAAGTT 1893
Query 1948 TACTGGCATCTCTTACCTTTGCCATCTCCTCACACACTAGACCAGATAGTGCGGAAAGAC 2007
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1894 TACTGGCATCTCTTACCTTTGCCTTCTCCTCACACACTAGACCAGATAGTGCAGAAAGAC 1953
Query 2008 CTGGCTAGGACTGGAAACTGGATGGATCTCCGCTTTGATATTGGTTGCATCGTTTCTGAA 2067
|||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||
Sbjct 1954 CTGGCTAGGACTGGAAACTGGATGGACCTCCACTTTGATATTGGTTGCATCGGTTCTGAA 2013
Query 2068 ACAGGTGAAATAATCCTTGATGAACTACTAGAAGAGATAATCAGCAATTGCAGAGACTTG 2127
||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||
Sbjct 2014 ACAGGTGAAATAATCCTTGATGAACTATTAGAAGAGATAATCAGCAACTGCACAGACTTG 2073
Query 2128 GTCCAACCTGAAAGAATCAACAAGCTGGTTC 2158
||||||||||||| |||||||||| || |||
Sbjct 2074 GTCCAACCTGAAACAATCAACAAGGTGATTC 2104
Score = 839 bits (454), Expect = 0.0
Identities = 640/723 (89%), Gaps = 40/723 (6%)
Strand=Plus/Plus
Query 512 GCTGCAAGAAGAACCTGGTGGATGCATTTCAGGTCTTGGATTCTAAAGAAGAATCA---T 568
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 476 GCTGCAAGAAGAACCTGGACGATGCATTTCAGGTCTTGGATTCTAAAGAAGAATCATTCT 535
Query 569 TGAATATCGGTACACCAACTTCGGGAGATTCTCAGAGAATCAA--AG-AGACAC------ 619
||||||||||||| |||| ||| ||||||||||||||||||| || |||||
Sbjct 536 TGAATATCGGTACGCCAATTTCAAGAGATTCTCAGAGAATCAATGAGCTGACACAATGTA 595
Query 620 -A-A-ACAATTGTAATTTTGAAGCCTGAACCAAATACCTTGGATGTTGGATCATCGCCTG 676
| | ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 596 GACATACAATTGTAATTTTGAAGCCTGAACCAAATAGCTTGGATGTTGGATCATCACCTG 655
Query 677 GAACACCTTCTACAGACAACAAGGCCAAAAATGAGAAATTCAGTTCTCGCTTTAGTCTCA 736
||||||||||||||||||||||| ||||||||| || |||||||||||||||| |||||
Sbjct 656 GAACACCTTCTACAGACAACAAGACCAAAAATGGGAGGTTCAGTTCTCGCTTTATTCTCA 715
Query 737 GTAGAATCAGAAGAAGACTAAAGTTTGCGGTTGGAAAGAATCCATGCAATGCTCAACATG 796
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 716 GTAGAATCAGAAGAAGACTAAAGTTTGCTGTTGGAAATAATCCATGCAATGCTCAACATG 775
Query 797 ACTCTGATCCTGATCCTGATGCAGATGCATTGTCGTCTAGCATGAGTCAAAACTGTTGTT 856
||||||||| |||||| | |||||||||||||||| ||||||||||||||||||||
Sbjct 776 ACTCTGATCATGATCC---T---GATGCATTGTCGTCTAACATGAGTCAAAACTGTTGTT 829
Query 857 TGGGAGAAGAGATAGAGACCAATCCC------GG-G--TCGGATGGAGAAATC-TTGCCT 906
||||||||| ||||||||| |||||| || | ||||||||||||| | ||||||
Sbjct 830 TGGGAGAAGCGATAGAGACTAATCCCGGGAAGGGTGTTTCGGATGGAGAAA-CATTGCCT 888
Query 907 GACATTGCTTCAAAAGGTGAGGCTAATAAAGAGGATACTTTCCATGAAAGTGAAAAAGAT 966
||||||||||||||| ||||||||||||| ||||| ||| |||||||||||| ||||
Sbjct 889 GACATTGCTTCAAAACGTGAGGCTAATAAGGAGGACACTATCCATGAAAGTG---AAGAC 945
Query 967 TCCAAGAAGAGTATGTGTGGCATATACATTGCTGCCAAGAAACACCTGTCTGAAATGCTT 1026
|| || |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 946 TCGAAAAAGAATATGTGTGGTATATACATTGCCGCCAAGAAACACCTGTCTGAAATGCTT 1005
Query 1027 GCAGAAGGAGACATAGATGCTGACTT-ACCGGATAAAGAAGTACCAAGAATCCTTGGGAA 1085
|||||||||||| |||||||| || ||||||||| |||||||||||||| ||||| ||
Sbjct 1006 GCAGAAGGAGAC---GATGCTGA-TTCACCGGATAAGGAAGTACCAAGAATTCTTGGAAA 1061
Query 1086 GATTCTTGCTCTCCCTGAGTTCTTCACACCAGAAAACAGTCCTAGAGTGACCTTGGCACT 1145
||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||
Sbjct 1062 GATTCTTGCTCTCCCTGAGTTCTCCACACCAGACAACAGTCCTAGAGTGGCCTTGGCACT 1121
Query 1146 TGATCATCAGATAATCGAAAAACCAAATATTCAGCAGTGCAGTTCAAAAGATTACTACTA 1205
|||||||||| || |||| |||||||| ||||||||||| |||||| |||||||| ||||
Sbjct 1122 TGATCATCAGCTAGTCGATAAACCAAAGATTCAGCAGTGTAGTTCAGAAGATTACAACTA 1181
Query 1206 TGA 1208
|||
Sbjct 1182 TGA 1184
Score = 693 bits (375), Expect = 0.0
Identities = 449/483 (93%), Gaps = 11/483 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAAAGAGATTTGTAGAAGACATCTTTCAAGAGAAGGGCTAGGATGTGTTTGGGTG 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGAGAAAGAGATTTGTAGAAGACATCTTTCAAGAGAAGGGATAGGATGTGTTTGGGTG 60
Query 61 TTTATGAGCATGTTTGATTTTAGACATGGTGGATCTAACCAGAAGCTTTTGATGGATAAG 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTATGAGCATGTTTGATTTCAGACATGGTGGATCTAACCAGAAGCTTTTGATGGATAAG 120
Query 121 AAACGTCGAAGCAAGA-GAATCATCATAGGTAATAATGGAGTGTTTGAGACTAAGGTTGA 179
|||||| ||||||| | ||||||| | |||||||||||| ||||||| |||||||||||
Sbjct 121 AAACGTGGAAGCAA-ACGAATCAT-A--GGTAATAATGGAATGTTTGACACTAAGGTTGA 176
Query 180 GAAGCAGCTTACTTGTGACTGTGACTGTGA-TG--AGGAGAGTGAAGCTGAAATGCAGAG 236
|||||||||||||||||||||||||| ||| || |||||||||||||||| ||||||||
Sbjct 177 GAAGCAGCTTACTTGTGACTGTGACTATGACTGTGAGGAGAGTGAAGCTGATATGCAGAG 236
Query 237 TGTCAAGAAACTCATAGAAGCTGAGATTGATGAGAAGACTACGCAAAAGTGTGAGGCGAG 296
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 237 TGTCAAGAAACTCATAGAAGATGAGATTGATGAGAAGACTAAGCAAAAGTGTGAGGCGAG 296
Query 297 AAACCGAAAGAGGAGAAGTAGGACCTGCAGCAAAATCAGTGAAGATATCAATGTTTTGAT 356
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 297 AAACCGAAAGAGGAGAAGTAGAACCTGCAGCAAAATCAGTGAGGATATCAATGTTTTGAT 356
Query 357 TGCTGGTGATGATGATGATGATCATGCAGAGAAATCAGATAATGAGTGTCCGATAGTTTC 416
|| |||||||||||||||| |||||||||||| ||||| || ||||||||| | ||||
Sbjct 357 TGTTGGTGATGATGATGAT---CATGCAGAGAAAGCAGATGATCAGTGTCCGAGAATTTC 413
Query 417 TCATAACGAAGTGGATATGGTAAATGATGATTCCGAAGAGAAGTTCAGCGAGTTGATAAA 476
||| || || |||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 414 TCAGAATGAGGTGGATTTGGTACCTGATGATTCCGAAGAGAAGTTCAGCGAGTTGATAAA 473
Query 477 GCG 479
|||
Sbjct 474 GCG 476
> Ahg497410 jgi|Araly1|497410|fgenesh2_kg.371__1__AT2G45900.1
Length=1842
Score = 1319 bits (714), Expect = 0.0
Identities = 950/1055 (90%), Gaps = 52/1055 (5%)
Strand=Plus/Plus
Query 86 ATGGTGGATCTAACCAGAAGCTTTTGATGGATAAGAAACGTCGAAGCAAGA-GAATCATC 144
||||||||||||||||||||||||||||||||||||||||| ||||||| | | | |||
Sbjct 53 ATGGTGGATCTAACCAGAAGCTTTTGATGGATAAGAAACGTGGAAGCAA-ACG-A--ATC 108
Query 145 ATAGGTAATAATGGAGTGTTTGAGACTAAGGTTGAGAAGCAGCTTACTTGTGACTGTGAC 204
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 109 ATAGGTAATAATGGAATGTTTGACACTAAGGTTGAGAAGCAGCTTACTTGTGACTGTGAC 168
Query 205 TGTGA---TGAGGAGAGTGAAGCTGAAATGCAGAGTGTCAAGAAACTCATAGAAGCTGAG 261
| ||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 169 TATGACTGTGAGGAGAGTGAAGCTGATATGCAGAGTGTCAAGAAACTCATAGAAGATGAG 228
Query 262 ATTGATGAGAAGACTACGCAAAAGTGTGAGGCGAGAAACCGAAAGAGGAGAAGTAGGACC 321
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 ATTGATGAGAAGACTAAGCAAAAGTGTGAGGCGAGAAACCGAAAGAGGAGAAGTAGGACC 288
Query 322 TGCAGCAAAATCAGTGAAGATATCAATGTTTTGATTGCTGGTGATGATGATGATGATCAT 381
|||| ||||| |||||| ||||||||||||||||||| |||||||||||||||| |||
Sbjct 289 TGCATCAAAACCAGTGAGGATATCAATGTTTTGATTGTTGGTGATGATGATGAT---CAT 345
Query 382 GCAGAGAAATCAGATAATGAGTGTCCGATAGTTTCTCATAACGAAGTGGATATGGTAAAT 441
||||||||| ||| | || ||||||||| | ||||||| || ||||||| | ||||||||
Sbjct 346 GCAGAGAAAGCAGGTGATCAGTGTCCGAGAATTTCTCAGAATGAAGTGGGTTTGGTAAAT 405
Query 442 GATGATTCCGAAGAGAAGTTCAGCGAGTTGATAAAGCGGTTGATAGCTCAAAAGGAAAGC 501
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 GATGATTCCGAAGAGAAGTTCAGCGAGTTGATAAAGCGGTTGATAGCTCAAAAGGAAAGT 465
Query 502 GAGGTAGAGAGCTGCAAGAAGAACCTGGTGGATGCATTTCAGGTCTTGGATTCTAAAGAA 561
|||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 466 GAGGCAGGGAGCTGCAAGAAGAACATGGTGGATGCATTTCAGGTCTTGGATTCTAAAGAA 525
Query 562 GAATCATT---GAATATCGGTACACCAACTTCGGGAGATTCTCAGAGAATCAAAGAG--- 615
|||||||| |||||||||||| |||| ||| ||||||||||||||||||| |||
Sbjct 526 GAATCATTCTTGAATATCGGTACGCCAATTTCAAGAGATTCTCAGAGAATCAATGAGCTG 585
Query 616 ACACAA---A--CAA----TTGTAATTTTGAAGCCTGAACCAAATACCTTGGATGTTGGA 666
|||||| | ||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 586 ACACAATGTAGACAAACAATTGTAATTTTGAAGCCTGAACCAAATAGCTTGGATGTTGGA 645
Query 667 TCATCGCCTGGAACACCTTCTACAGACAACAAGGCCAAAAATGAGAAATTCAGTTCTCGC 726
||||| ||||||||||||||||||||||||||| ||||||||| || ||||||||||||
Sbjct 646 TCATCACCTGGAACACCTTCTACAGACAACAAGACCAAAAATGGGAGGTTCAGTTCTCGC 705
Query 727 TTTAGTCTCAGTAGAATCAGAAGAAGACTAAAGTTTGCGGTTGGAAAGAATCCATGCAAT 786
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 706 TTTATTCTCAGTAGAATCAGAAGAAGACTAAAGTTTGCTGTTGGAAAGAATCCATGCAAT 765
Query 787 GCTCAACATGACTCTGATCCTGATCCTGATGCAGATGCATTGTCGTCTAGCATGAGTCAA 846
|||||||| ||||||||||||||||| | | | |||||||||||||| ||||||||||
Sbjct 766 GCTCAACAGGACTCTGATCCTGATCC--A-G-A--TGCATTGTCGTCTAACATGAGTCAA 819
Query 847 AACTGTTGTTTGGGAGAAGAGATAGAGACCAATCCCGGG-----T----CGGATGGAGAA 897
||||||||||||||||||| ||||||||| ||||||||| | |||||||||||
Sbjct 820 AACTGTTGTTTGGGAGAAGCGATAGAGACTAATCCCGGGAAGGGTGTTTCGGATGGAGAA 879
Query 898 ATC-TTGCCTGACATTGCTTCAAAAGGTGAGGCTAATAAAGAGGATACTTTCCATGAAAG 956
| | ||||||||||||||||||||| ||||||||||||| ||||| ||| ||||||||||
Sbjct 880 A-CATTGCCTGACATTGCTTCAAAACGTGAGGCTAATAAGGAGGACACTATCCATGAAAG 938
Query 957 TGAAAAAGATTCCAAGAAGAGTATGTGTGGCATATACATTGCTGCCAAGAAACACCTGTC 1016
|||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 939 TGAA---GATTCCAAGAAGAGTATGTGTGGTATATACATTGCCGCCAAGAAACACCTGTC 995
Query 1017 TGAAATGCTTGCAGAAGGAGACATAGATGCTGACTT-ACCGGATAAAGAAGTACCAAGAA 1075
|||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||
Sbjct 996 TGAAATGCTTGCAGAAAGAGAC---GATGCTGA-TTCACCGGATAAAGAAGTACCAAGAA 1051
Query 1076 TCCTTGGGAAGATTCTTGCTCTCCCTGAGTTCTTC 1110
| ||||||||||||||| ||| |||||| | ||||
Sbjct 1052 TTCTTGGGAAGATTCTTTCTCCCCCTGACT-CTTC 1085
Score = 909 bits (492), Expect = 0.0
Identities = 545/571 (95%), Gaps = 2/571 (0%)
Strand=Plus/Plus
Query 1326 CTCTTCCATTATCCAACAAGATGCATATATTGATGAGGATGAGCACAAACAACTTTTGGA 1385
|||||||||||||||||||||||||||| |||||||||||||||| || ||||| |||||
Sbjct 1080 CTCTTCCATTATCCAACAAGATGCATATGTTGATGAGGATGAGCAGAAGCAACTCTTGGA 1139
Query 1386 AAAGGAAGTACTCAAAGAGGGACAATCACCGTGTTCTCCACCAAACTCTTCAGTGAGAAT 1445
|||||||| |||| | ||||| |||| ||||||||||||||||||||||||| |||||||
Sbjct 1140 AAAGGAAGGACTCGACGAGGGGCAATTACCGTGTTCTCCACCAAACTCTTCAATGAGAAT 1199
Query 1446 GTCTGAATGCCAAGAAAACACCACAGATGTAT-TGGGAAAGTCAAGTCCTGTATCTGTGC 1504
|||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct 1200 GTCTGAATGCCAAGAAAATACCACAGATGT-TCTGGGAAAGTCAAGTCCTGTATCTGTGC 1258
Query 1505 TTGAGCCTTTCTTTACAGATGATGACACTAGTCCAAACAGCTCCAGGTTCTCTTCAGCCG 1564
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTGAGCCTCTCTTTACAGATGATGACACTAGTCCAAACAGCTCCAGGTTCTCTTCAGCCG 1318
Query 1565 AAATGCGGATGCAACCACTGTGCATAAGATTCGACGAACCTGATTTTCCAGGACCGGAGA 1624
|| ||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||
Sbjct 1319 AAGTGCGGATGCAACCACTGTGCATAAGATTCGACGAAGCTGATTCTCCAAGACCGGAGA 1378
Query 1625 AAGACAATGATGTCAAAACAAGAATGGACGACAAGGAACTGGCACTTGAATACATTCAAG 1684
|||||||||||| |||||| |||||||| ||||| ||| |||||||||||||||||||||
Sbjct 1379 AAGACAATGATGCCAAAACTAGAATGGATGACAAAGAATTGGCACTTGAATACATTCAAG 1438
Query 1685 CCGTGGTGAAATCATCAGAGTTGAACTGGGAAGAGCTTTTGGCGAGATCTTTTTATTCGG 1744
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 CCGTGGTGAAATCCTCAGAGTTGAACTGGGAAGAGCTTTTGGCGAGATCTTTTTATTCGG 1498
Query 1745 AGAAGATTCTTGAGCAGGCTCTAATGGATGACATAGATTTCTGTTCGACAAATCTCTGCA 1804
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1499 AGAAGATTCTTGAGCAGGCTCTAATGGATGACATAGATTTCTGTTCGACAAATCTATGCA 1558
Query 1805 GCGATAAGAAACTCCTTTTTGACTGTATCAATGAAGTTCTTATGGAGTTTTGTGGACATG 1864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GCGATAAGAAACTCCTTTTTGACTGTATCAATGAAGTTCTTATGGAGTTTTGTGGACATG 1618
Query 1865 GCCCTTGGATTTCATTCGTCAAACCTGCAAT 1895
|||||||||||||||||||||||||| ||||
Sbjct 1619 GCCCTTGGATTTCATTCGTCAAACCTTCAAT 1649
Score = 211 bits (114), Expect = 2e-53
Identities = 127/133 (95%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 1939 GAAGAAGTTTACTGGCATCTCTTACCTTTGCCATCTCCTCACACACTAGACCAGATAGTG 1998
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1652 GAAGAAGTTTACTGGCATCTCTTACCTTTGACTTCTCCTCACACACTAGACCAGATAGTG 1711
Query 1999 CGGAAAGACCTGGCTAGGACTGGAAACTGGATGGATCTCCGCTTTGATATTGGTTGCATC 2058
| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1712 CAGAAAGAC-TGGCTAGGACTGGAAACTGGATGGA-CTCCGCTTTGATATTGGTTGCATC 1769
Query 2059 GTTTCTGAAACAG 2071
| |||||||||||
Sbjct 1770 GGTTCTGAAACAG 1782
Score = 86.1 bits (46), Expect = 1e-15
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAAGAGATTTGTAGAAGACATCTTTCAAGAGAAGGGCTAGGAT 49
|||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGAGAAAGAGATTTGTAGAAGACATCTTTCAAGAGAAGGGATAGGAT 49
> Ahg907815 jgi|Araly1|907815|Al_scaffold_0002_896
Length=492
Score = 193 bits (104), Expect = 6e-48
Identities = 122/130 (94%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 70 ATGTTTGATTTTAGACATGGTGGATCTAACCAGAAGCTTTTGATGGATAAGAAACGTCGA 129
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGTTTGACTTCAGACATGGTGGATCTAACCAGAAGCTTTTGATGGATAAGAAACGTGGA 60
Query 130 AGCAAGAGAATCATCATAGGTAATAATGGAGTGTTTGAGACTAAGGTTGAGAAGCAGCTT 189
||||| || | |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 AGCAAAAG-A--ATCATAGGTAATAATGGAATGTTTGAGACTAAGGTTGAGAAGCAGCTT 117
Query 190 ACTTGTGACT 199
||||||||||
Sbjct 118 ACTTGTGACT 127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81398853565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5