BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45930.1
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483733 jgi|Araly1|483733|fgenesh2_kg.4__2793__AT2G45930.1 1853 0.0
Ahg935696 jgi|Araly1|935696|scaffold_403684.1 756 0.0
Ahg935697 jgi|Araly1|935697|scaffold_403685.1 211 1e-53
Ahg935559 jgi|Araly1|935559|scaffold_403547.1 182 8e-45
> Ahg483733 jgi|Araly1|483733|fgenesh2_kg.4__2793__AT2G45930.1
Length=1206
Score = 1853 bits (1003), Expect = 0.0
Identities = 1131/1193 (95%), Gaps = 7/1193 (1%)
Strand=Plus/Plus
Query 114 ACCCTTCGTATGTTCTCCTCCTCCTCCACCACCACCAACCCTTACTTGATGTTTAGTCTG 173
|||||||| ||||||||||||| | || ||||||||||| |||||||||| || ||||
Sbjct 19 ACCCTTCGGATGTTCTCCTCCT--T-TACTACCACCAACCCGTACTTGATGTATAATCTG 75
Query 174 ATACATTATGGAAGTTGTTTGGATGATATTGATGTAACAAGCACTATACACTATTTTGAC 233
|||||| ||||||||| ||||||||| || ||| |||||||| |||||||||||||||||
Sbjct 76 ATACATAATGGAAGTTCTTTGGATGACATCGATATAACAAGCGCTATACACTATTTTGAC 135
Query 234 CCGGTCAAGGAAGATGAAATTATTGTCAGAGACAAGGCCTTTCCCATGGAGTTGCGTAAT 293
|||| ||||||||||||| |||||||| |||||| |||||||||||||||||||||||||
Sbjct 136 CCGGCCAAGGAAGATGAAGTTATTGTCCGAGACAGGGCCTTTCCCATGGAGTTGCGTAAT 195
Query 294 ACGAGTCTGGTTGGAATGTCCCACGGATGGGGAGTTTTCAATGTGGAGACAGGTGATGGT 353
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 196 ACGAGTCTGGTTGGAATGTCCCATGGATGGGGAGTTTTCAATGTGGAGACTGGTGATGGT 255
Query 354 AGACATAAAGCCGTTTATGTTAGCGACTACTGCAATCCTTGTGGCTCCAAATCAAATCCC 413
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 256 AGACATAAAGCCGTTTATGTTAGCGACTTCTGCAATCCTTGTGGCTCCAAAACAAATCCC 315
Query 414 AAAATCATTCCTTTGCATCCCATGTATCCCATGGGTAAACCTAATATTACTCAATTACGC 473
|||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||
Sbjct 316 AAAATCATTCCTTTGCATCCCATGCATCCCATTGGTAAACCTAATATTACCCAATTACGC 375
Query 474 CTCATCACTAACGCTGCAATGACTTGTTCACCAGATCAAAGTAAAGATTTTGTAGTGGCT 533
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 376 CTCATCACTAATGCTGCAATGACTTGTTCACCTGATCAAAGTAAAGATTTTGTAGTAGCT 435
Query 534 GCCAATTGTTTAGGACTTGAGATCCATTTCTTTAGGCCTTGTGGCAAAACTGACAACTAC 593
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 436 GCCAATTGTTTAGGACTTGAGATCCATTTCTTTAGGCCTTGTGGCAAAACCAAGAACTAC 495
Query 594 TCGGGTTTAGGCTTTAAAACCGAATCCCACTTTTTTGATCAGTCAAAGGTTATGTATTCA 653
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 496 TCTGGTTTAGGCTTTAAAACCGAATCCCACTATTTTGATCAGTCAAAGGTTATGTATTCA 555
Query 654 AAGAGAGATAAAAAGTTCTACACTCCTAGTGTTGGAGGCCATTTGTTGGGTTTCTGGGAT 713
|||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 556 AAGAAAGATCAAAAGTTCTACACTCCTAGTGTTGGAGGCCACTTGTTGGGTTTCTGGGAT 615
Query 714 TCTTGCTTCGAGGATTTGAGTTGCGGTTTTGCAACCTTCCTGAGGTGACACAGTCCGAGT 773
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 616 TCTTGCTTCGAGGATTTGAGTTGCGGTTTTGCAACCTTCCTGAGGTGACCCAGTCCGAGT 675
Query 774 GGGAGCTCTTGGACTCATGTTCC-CCGCCGACTGTACACCTCGTTGAGTCTCCCTCAGGA 832
|||||||||||||||| || ||| ||||||||||||||||| || |||||||||||||||
Sbjct 676 GGGAGCTCTTGGACTCCTG-TCCTCCGCCGACTGTACACCTTGTGGAGTCTCCCTCAGGA 734
Query 833 CAGCGTTTCCTAGTCAAGTGGTACGCTCAGAACTACAAACCGGGCGAGAGGATGACATTC 892
|||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 735 CAGCGTTTCCTAATCAAGTGGTATGCTCAGAACTACCAACCGGGCGAGAGGATGACATTC 794
Query 893 TTGTGTCGTGGAACAAAGCATTTCATGGTCTTTAGAGAGGAGGAAGATATGAACATGTGT 952
|||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 795 TTGTGTCGCGGAACAAAGCGTTTCATGGTGTTTAGAGAGGAGGAAGATATGAACATGTGT 854
Query 953 TACACTGAGGACATTGGAGATCTCTGCATATTCCTCGGCAGAAGTGAGCCCTTCTGTGTC 1012
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 855 TACACGGAGGACATTGGAGATCTCTGCATATTCCTCGGCAGAAGTGAGCCCTTTTGTGTC 914
Query 1013 AAGGCAAGCTCATTCCCTGGCTTAAACCCTAACTCCATCTATTTTGCAGGCGATGGCTTT 1072
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 915 AAGGCAAGCTCATTCCCTGGCCTAAATCCTAACTCCATCTATTTTGCAGGCGATGGCTTT 974
Query 1073 GGTGTTTACGATATCGCCACTAGAAAACCACGTTCCTT-TCGTCCCAAGTCTCCCTCAGC 1131
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 975 GGTGTTTACGATATCGCCACTAGAAAACCACGTTCCTTCT-GTCCCAAGTCTCCCTCAGC 1033
Query 1132 CTTCTCCACAACACCACTCTTCCCTTACTGGATCCCTCCAATGCCTCTCTAGTTACTATG 1191
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1034 CTTCTCAACAACACCACTCTTCCCTTACTGGATCCCTCCAATGTCTCTCTAGTTACTAGG 1093
Query 1192 CAAACTTCATTAGTTATTCTCTTCTTGTATTTTAGTTGGTGGATCCAATATAGAATCCAG 1251
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1094 CAAACTTCACTAGTTATTCTCTTCTTGTATTTTAGGTGGTGGATCCAATATAGAATCCAG 1153
Query 1252 TTTCTTGTTTCACTTTGTGTTATGTAAACTCGAAAGAAACTAATGAAGACATG 1304
||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1154 TTTCTCGTTTCACTTTGTGTTATGTAAACTCAAAAGAAACTAATGAAGACATG 1206
> Ahg935696 jgi|Araly1|935696|scaffold_403684.1
Length=722
Score = 756 bits (409), Expect = 0.0
Identities = 604/694 (87%), Gaps = 29/694 (4%)
Strand=Plus/Plus
Query 38 AGCTATGTCATCTCTGCTTCTCCGCCTCTCTTCCAAGACCTCTCTCCGCAAACTTTCTCT 97
||||||||| ||||||||||| | ||| |||||| | ||| ||||||||| ||| ||||
Sbjct 18 AGCTATGTCGTCTCTGCTTCTAAGTCTCCCTTCCAGGCCCTTTCTCCGCAACCTTGCTCT 77
Query 98 GAGATGCCGCCACAGTACCCTTCGTATGTTCTCCTCCTCCTCCACCACCACCAACCCTTA 157
|| ||||| |||| |||||||| ||| | | |||||||||||||||||||||||| ||
Sbjct 78 GAAATGCCACCAC---ACCCTTCGGATG-T-T-CTCCTCCTCCACCACCACCAACCCGTA 131
Query 158 CTTGATGTTTAGTCTGATACATTATGGAAGTTGTTTGGATGATATTGATGTAACAAGCAC 217
|||||||| | |||| | |||||||||||||| ||| ||||||||| ||||||||||||
Sbjct 132 CTTGATGTATCGTCTCACACATTATGGAAGTTCTTTTGATGATATTAATGTAACAAGCAA 191
Query 218 TATACACTATTTTGACCCGGTCAAGGAAGATGAAATTATTGTCAGAGACAAGGCCTTTCC 277
||| ||||| ||||| |||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 192 TATCCACTACTTTGATCCGGTCAAGGAAGATGAAGTTATTGTCCGAGACAAGGCCTTTCC 251
Query 278 CATGGAGTTGCGTAATACGAGTCTGGTTGGAATGTCCCACGGATGGGGAGTTTTCAATGT 337
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 AATGGAGTTGCGTAATACGAGTCTGGTTGGAATGTCCCACGGATGGGGAGTTTTCAATGT 311
Query 338 GGAGACAGGTGATGGTAGACATAAAGCCGTTTATGTTAGCGACTACTGCAATCCTTGTGG 397
||||| | ||||| | ||| |||||| | |||||||||||||||||||||||||||||
Sbjct 312 GGAGA--G-TGATG--A-ACACAAAGCCCTCTATGTTAGCGACTACTGCAATCCTTGTGG 365
Query 398 CTCCAAATCAAATCCCAAAATCATTCCTTTGCATCCCATGTATCCCATGGGTAAACCTAA 457
||||||||||||||||||| |||||||||||||||||||| || | |||||||
Sbjct 366 CTCCAAATCAAATCCCAAAGTCATTCCTTTGCATCCCATG--------GG-TCAACCTAA 416
Query 458 TATTACTCAATTA-CGCCTCATCACTAACGCTGCAATGACTTGTTCACCAGATCAAAGTA 516
||| || ||| | ||| ||||||||||||| | |||||||| |||||| ||||||||||
Sbjct 417 TATCACCCAAA-AGCGCATCATCACTAACGCCGGAATGACTTATTCACCTGATCAAAGTA 475
Query 517 AAGATTTTGTAGTGGCTGCCAATTGTTTAGGACTTGAGATCCATTTCTTTAGGCCTTGTG 576
|| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 476 AACATTTTGTAGTGGCGGCCAATTGTTTAGGACTTGAGATCAATTTCTTTAGGCCTTGTG 535
Query 577 GCAAAACTGACAACTACTCGGGTTTAGGC---TTTAAAACCGAATCCCACTTTTTTGATC 633
||||| | || ||| || || || ||| ||||||||| | ||||| | ||||||||
Sbjct 536 GCAAACCAGAGTACT-CT-GG-TTCGGGCGGCTTTAAAACCCAGTCCCAATATTTTGATC 592
Query 634 AGTCAAAGGTTATGTATTCAAAGAGAGATAAAAAGTTCTACACTCCTAGTGTTGGAGGCC 693
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 593 AATCAAAGGTTATGTATTCAAAGAGAGATGAAAAGTTCTACACTCCTAGTGTTGGAGGCC 652
Query 694 ATTTGTTGGGTTTCTGGGATTCTTGCTTCGAGGA 727
| || |||| ||||||||| |||||||| |||||
Sbjct 653 ACTTCTTGGCTTTCTGGGACTCTTGCTTTGAGGA 686
> Ahg935697 jgi|Araly1|935697|scaffold_403685.1
Length=796
Score = 211 bits (114), Expect = 1e-53
Identities = 190/224 (85%), Gaps = 16/224 (7%)
Strand=Plus/Plus
Query 914 TTCATGGTCTTTAGAGAGGAGGAAGATATGAACATGTGTTACACTGAGGACATTGGAGAT 973
|||||||| ||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 459 TTCATGGTGTTTAGAGAGGAGGAAGATATGAACATGTGTTACACAGAAGACATTGGTGAT 518
Query 974 CTCTGCATATTCCTCGGCAG-AAGTGAGCCCTTCTGTGTCAAGGCAAGCTCATTCCCTGG 1032
||||||||||||||||||| || ||||| || ||||||||||| ||||||||||| ||
Sbjct 519 CTCTGCATATTCCTCGGCAATAAC-GAGCCTTTTTGTGTCAAGGCCAGCTCATTCCCAGG 577
Query 1033 CTTAAACCCTAACTCCATCTATTT--T-GC--A-GGCGATGG------CTTTGGTGTTTA 1080
| |||||||||| ||||||||||| | | | ||| |||| || |||||||||
Sbjct 578 CCTAAACCCTAATTCCATCTATTTCCTCGGTGAAGGCTATGGTGAAGGCTATGGTGTTTA 637
Query 1081 CGATATCGCCACTAGAAAACCACGTTCCTTTCG-TCCCAAGTCT 1123
||||||||||||||||| ||||||||||| | ||||||||||
Sbjct 638 CGATATCGCCACTAGAACCCCACGTTCCTT-CAATCCCAAGTCT 680
> Ahg935559 jgi|Araly1|935559|scaffold_403547.1
Length=1099
Score = 182 bits (98), Expect = 8e-45
Identities = 201/248 (81%), Gaps = 18/248 (7%)
Strand=Plus/Plus
Query 905 ACAAAGC-ATTTCATGGTCTTTAGAGAGGAGGAAGATATGAACATGTGTTACACTGAGGA 963
||||||| ||| |||||| || ||||||||||||||||||||| |||||||||| | ||
Sbjct 762 ACAAAGCTATT-CATGGTGTTCAGAGAGGAGGAAGATATGAACTTGTGTTACACACAAGA 820
Query 964 CATTGGAGATCTCTGCATATTCCTCGGCAG-AAGTGAGCCCTTCTGTGTCAAGGCAAGCT 1022
|||||| |||||||||||||||||||||| || ||||| || ||||||||||| ||||
Sbjct 821 CATTGGTGATCTCTGCATATTCCTCGGCAATAAC-GAGCCTTTTTGTGTCAAGGCCAGCT 879
Query 1023 CATTCCCTGGCTTAAACCCTAACTCCATCTATTT--T-G----C----A-GGCGATGGCT 1070
| ||||| ||| |||||||||| ||||| ||||| | | | | || || ||||
Sbjct 880 CCTTCCCGGGCCTAAACCCTAATTCCATTTATTTCCTCGGTGACCGTTATGGTGAAGGCT 939
Query 1071 TTGGTGTTTACGATATCGCCACTAGAAAACCACGTTCCTTTCG-TCCCAAGTCTCCCTCA 1129
|||| |||||||||| |||||||||| ||||||||||| | |||||||||| |||
Sbjct 940 ATGGTATTTACGATATTGCCACTAGAACCCCACGTTCCTT-CAATCCCAAGTCTTTTTCA 998
Query 1130 GCCTTCTC 1137
|| |||||
Sbjct 999 GCTTTCTC 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49140440013
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5