BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45940.1
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935559 jgi|Araly1|935559|scaffold_403547.1 1749 0.0
Ahg935697 jgi|Araly1|935697|scaffold_403685.1 516 2e-145
Ahg493278 jgi|Araly1|493278|fgenesh2_kg.7__2711__AT4G16080.1 300 2e-80
> Ahg935559 jgi|Araly1|935559|scaffold_403547.1
Length=1099
Score = 1749 bits (947), Expect = 0.0
Identities = 1047/1097 (95%), Gaps = 0/1097 (0%)
Strand=Plus/Plus
Query 2 ACCACCAACCCTTACTTGATGTATTATGTCACCTATTCTGATGAAGCCCCACAGGCCGGT 61
||||||||||||||| ||||||||| ||||||||||| || || ||||||| ||||||||
Sbjct 3 ACCACCAACCCTTACATGATGTATTGTGTCACCTATTGTGGTGTAGCCCCAGAGGCCGGT 62
Query 62 GCAATGACAGAGCTCCGCATGTTTGACCCGGCCAAGGAAGAGTATTTCACCGTCCATGAT 121
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 63 GCAATGACAGAGCTCCGCATGTTTGACCCGGCCAAGGAAGAGTATTTTACCGTCCGTGAT 122
Query 122 AAGCCACTTCCCAAAGAGTTGGTTAAGTCGAGGCTGGTGGGAAGTTCCCATGGTTGGGGA 181
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 123 AAGCCACTTACCAAAGAGTTGGTTACGTCGAGGCTGGTGGGAAGTTCCCATGGTTGGGGA 182
Query 182 GTTTTTCTTGGCTCCCCTAATTCCATACTAATTAGCGACTACTGCAATCCCTCCAGCTCC 241
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 183 GTTTTTCTTGGCTCCCCTAATTCCATACTAATTAGCGACTACTGCAATCCATCGAGCTCC 242
Query 242 AAATCAAACCCCAAGATGATCCCTCTGCCTCCACGGAGTTATGAACACTCTTGTCAAAAT 301
|||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||
Sbjct 243 AAATCAAACCCCAAGATGATCCCTCTGCCTCCTCGAAGTTATGAATACTCTTGTCAAAAT 302
Query 302 GAATTGGTTAGTGGCGTGGCAATGTCCTCTTCTCCTGAAGAAGAAGACTTCGTTATGGCT 361
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 303 GAATTGGTAAGTGGCGTGGCAATGTCCTCTTCTCCTGAAGAAGAAGACTTCGTTATCGCT 362
Query 362 GTCAAGTTCACGGGACGTCGGGTGAGTATATACAGGCCCGGTCAACATCGTAAGGGGAAC 421
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 363 GTCAAGTTCACGGGACGTCGGGTGAGTATATATAGGCCCGGTCAACACCGTAAGGGGAAC 422
Query 422 CACCGCTTTTCGTCTACTGAACTGTTCGATTATTTTGAACAAGCCAACTTGATGTATTCC 481
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 423 CACCGCTTTTCGTCTACTGAATTATTCGATTATTTTGAACAAGCCAACTTGATGTATTCC 482
Query 482 AAGAGAGATCAACGGTTCTACATGCCAAGTTCTGGAGGCCACCACTTGTGGTCTTGGGAT 541
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 483 AAGAGAGATCAAAGGTTCTACATGCCAAGTTCTGGAGGCCACCACTTGTGGTCTTGGAAT 542
Query 542 GGTATAATATCCACCGACTCTCAGTACCATGACTTACGCTTTCACAACCTTCCTCAGTTT 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 543 GGTATAATATCCACCGACTCTCAGTACCATGACTTACGCTTTCACAACCTTCCTCTGTTT 602
Query 602 TCACTTTCCGAGTTGCAGCTTTTGAGATCTTGTTACAGAACACAACATCTTGTGGAGTCT 661
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 603 TCACTTTCCGAGTTGCAGCTTTTGAGATCTTGTTACAGGACACAACAACTTGTGGAGTCT 662
Query 662 CCCTCAGGACAACGTTTCCTAGTCAAATGGTCTGTTCAAACCCTTGGCAGGTCTGTTCAA 721
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 663 CCCTCAGGACAGCGTTTCCTAGTCAAATGGTATGTTCAAACCCTTGGCAGGTCTGTTCAA 722
Query 722 AGCCTTGCGCATCGGTCGGTAGAATTCAGTTTTGGCGGCACAAAGCTGTTCATGGTGTTT 781
|||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 723 AGCCTTGCGCATAGGTCGGTAAAATTCAGTTTTGGCGGCACAAAGCTATTCATGGTGTTC 782
Query 782 AGAGAGGAGGAGGATATGAACATGTGTTACACACAAGACATTGGTGATCTCTGCATATTC 841
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 783 AGAGAGGAGGAAGATATGAACTTGTGTTACACACAAGACATTGGTGATCTCTGCATATTC 842
Query 842 CTCGGCAATAACGAGCCTTTTTGTGTCAAGGCCAGTTCATTCCCTGGCCTAAACCCTAAT 901
||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 843 CTCGGCAATAACGAGCCTTTTTGTGTCAAGGCCAGCTCCTTCCCGGGCCTAAACCCTAAT 902
Query 902 TCCATCTATTTCATAGGTGACCGTTATGGTGAAGGCTATGGCGTTTACGATATCGCCACT 961
||||| |||||| | |||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 903 TCCATTTATTTCCTCGGTGACCGTTATGGTGAAGGCTATGGTATTTACGATATTGCCACT 962
Query 962 AGAACCCCACGTTCCTTCAATCCCAAGTCTTTTTCAGCTTTCTCTGATTTACCTAATGGC 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGAACCCCACGTTCCTTCAATCCCAAGTCTTTTTCAGCTTTCTCTGATTTACCTAATGGC 1022
Query 1022 CAAGGTTACGTTCTTCCTAATTGGCTTCCTCACTGGATTCCTCCATTTCCTCTCTAGTTG 1081
||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1023 CAAGGTTACGTGGTTCCCAATTGGGTTCCTCACTGGATTCCTCCATTTCCTCTCTAGTTG 1082
Query 1082 TTAGGTCATTCGTTTTC 1098
|| || ||||||||||
Sbjct 1083 ATATGTTATTCGTTTTC 1099
> Ahg935697 jgi|Araly1|935697|scaffold_403685.1
Length=796
Score = 516 bits (279), Expect = 2e-145
Identities = 361/399 (90%), Gaps = 11/399 (3%)
Strand=Plus/Plus
Query 694 TGTTCAAACCCTTGGCAGGTCTGTTCAAAGCCTTGCGCATCGGTCGGTAGAATTCAGTTT 753
|||||||| |||| |||||| |||| |||||||| || | |||||||| |||||| |||
Sbjct 383 TGTTCAAAGCCTTAGCAGGTATGTTAAAAGCCTTATGCTTAGGTCGGTAAAATTCAATTT 442
Query 754 TGGCGGCACAAAGCTGTTCATGGTGTTTAGAGAGGAGGAGGATATGAACATGTGTTACAC 813
||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 443 TGGGGGCACAAAGTTGTTCATGGTGTTTAGAGAGGAGGAAGATATGAACATGTGTTACAC 502
Query 814 ACAAGACATTGGTGATCTCTGCATATTCCTCGGCAATAACGAGCCTTTTTGTGTCAAGGC 873
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 AGAAGACATTGGTGATCTCTGCATATTCCTCGGCAATAACGAGCCTTTTTGTGTCAAGGC 562
Query 874 CAGTTCATTCCCTGGCCTAAACCCTAATTCCATCTATTTCATAGGTGACCGTTATGGTGA 933
||| |||||||| ||||||||||||||||||||||||||| | ||||| | ||||||||
Sbjct 563 CAGCTCATTCCCAGGCCTAAACCCTAATTCCATCTATTTCCTCGGTGAAGGCTATGGTGA 622
Query 934 AGGCTATGGCGTTTACGATATCGCCACTAGAACCCCACGTTCCTTCAATCCCAAGTCTTT 993
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 AGGCTATGGTGTTTACGATATCGCCACTAGAACCCCACGTTCCTTCAATCCCAAGTCTTT 682
Query 994 TTCAGCTTTCTCTGAT-T---T-A--C-C-TAATGGCCAAGGTT-ACGTTCTTCCTAATT 1043
||| |||||||||||| | | | | | ||||||| |||||| |||| |||||| |||
Sbjct 683 TTCGGCTTTCTCTGATATAGCTGATTCACCTAATGGC-AAGGTTTACGTGCTTCCTGATT 741
Query 1044 GGCTTCCTCACTGGATTCCTCCATTTCCTCTCTAGTTGT 1082
|| ||||||||||||||||||||| ||||||||||||||
Sbjct 742 GGGTTCCTCACTGGATTCCTCCATCTCCTCTCTAGTTGT 780
Score = 368 bits (199), Expect = 5e-101
Identities = 246/269 (91%), Gaps = 2/269 (1%)
Strand=Plus/Plus
Query 1 CACCACCAACCCTTACTTGATGTATTA-TGTCACCTATTCTGATGAAGCCCCACAGGCCG 59
|||||||||||| ||||||||||| || ||||||||||| || |||| |||| ||||||
Sbjct 113 CACCACCAACCCGTACTTGATGTA-TAGTGTCACCTATTGTGGTGAATACCCAGAGGCCG 171
Query 60 GTGCAATGACAGAGCTCCGCATGTTTGACCCGGCCAAGGAAGAGTATTTCACCGTCCATG 119
||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 172 GTGCAATAACAAAGCTCCGCATGTTTGACCCGGCCAAGGAAGATTATTTCACCGTCGGTG 231
Query 120 ATAAGCCACTTCCCAAAGAGTTGGTTAAGTCGAGGCTGGTGGGAAGTTCCCATGGTTGGG 179
||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 232 ATAAGCCACTTTCCAAAGAGTTGGCTAAGTCGAGGCTGGTGGGAAGTTCCCATGGATGGG 291
Query 180 GAGTTTTTCTTGGCTCCCCTAATTCCATACTAATTAGCGACTACTGCAATCCCTCCAGCT 239
|||||||| || |||||| ||||||||||||| |||||||||||||||||||| ||||
Sbjct 292 GAGTTTTTATTAGCTCCCGGGATTCCATACTAATCAGCGACTACTGCAATCCCTCGAGCT 351
Query 240 CCAAATCAAACCCCAAGATGATCCCTCTG 268
|||||||||||||||||||||||||||||
Sbjct 352 CCAAATCAAACCCCAAGATGATCCCTCTG 380
> Ahg493278 jgi|Araly1|493278|fgenesh2_kg.7__2711__AT4G16080.1
Length=1155
Score = 300 bits (162), Expect = 2e-80
Identities = 204/224 (91%), Gaps = 3/224 (1%)
Strand=Plus/Plus
Query 770 TTC-ATGGTGTTTAGAGAGGAGGAGGATATGAACATGTGTTACACACAAGACATTGGTGA 828
||| || ||||||||||| ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 891 TTCAATTGTGTTTAGAGAAGAGGAAGATATGAACATGTGTTACACAGAAGACATTGGTGA 950
Query 829 TCTCTGCATATTCCTCGGCAATAACGAGCCTTTTTGTGTCAAGGCCAGTTCATTCCCTGG 888
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 951 TCTCTGCATATTCCTCGGCAATAACGAGCCTTTTTGTGTCAAAGCCAGCTCATTCCCGGG 1010
Query 889 CCTAAACCCTAATTCCATCTATTTCATAGGTGACCGTTATGGTGAAGGCTATGGCGTTTA 948
|||||| ||||| |||||||||||| | ||||| | |||||||||||||| || |||||
Sbjct 1011 CCTAAAACCTAACTCCATCTATTTCCTCGGTGAAGGCTATGGTGAAGGCTACGGTGTTTA 1070
Query 949 CGATATCGCCACTAGAACCCCACGTTCCTTCA-ATCCCAAGTCT 991
|||||||||||||| ||||||||||||||||| | |||||||||
Sbjct 1071 CGATATCGCCACTAAAACCCCACGTTCCTTCACA-CCCAAGTCT 1113
Score = 222 bits (120), Expect = 4e-57
Identities = 220/266 (83%), Gaps = 16/266 (6%)
Strand=Plus/Plus
Query 64 AATGACAGAGCTCCGCATGTTTGACCCGGCCAAGGAAGAGTATTTCACCGTC-CATGATA 122
|||||||||| ||| |||||||||||||||||||||||||||||||||| || | |||||
Sbjct 315 AATGACAGAGTTCCTCATGTTTGACCCGGCCAAGGAAGAGTATTTCACCATCGC-TGATA 373
Query 123 AGCCACTTCCCAAAGAGTTGGTTAAGTCGAGGCTGGTGGGAAGTTCCCATGGTTGGGGAG 182
|||||||||||||||| ||| ||||||| | || ||||||||||||||||| |||||||
Sbjct 374 AGCCACTTCCCAAAGATTTGATTAAGTCTAATCTAGTGGGAAGTTCCCATGGATGGGGAG 433
Query 183 TTTTTCTTGGCTCCCCTAATTCCATACTAATTAGCGACTACTGCAATCCCTCCAGCTCCA 242
||| ||| ||||||| ||| ||||||||| ||| | ||| | |||||| |||||||
Sbjct 434 TTTATCTCATCTCCCCTGATTACATACTAATCAGC-A--ACT--A-TCCCTCGAGCTCCA 487
Query 243 AATCAAACCCCAAGATGATCCCTCTGCCTCCACGG---AGTTATGAACACTC-TTGTCAA 298
|||||||||||||||| || ||||||||| ||| ||| | || | | || ||||
Sbjct 488 AATCAAACCCCAAGATCATTGATCTGCCTCCTCGGCCTAGTC-T-AA-A-TGGTTCTCAA 543
Query 299 AATGAATTGGTTAGTGGCGTGGCAAT 324
| |||||||| ||||| ||||||||
Sbjct 544 ACGGAATTGGTAAGTGGTGTGGCAAT 569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45633131649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5