BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45950.2
Length=1808
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483735 jgi|Araly1|483735|fgenesh2_kg.4__2795__AT2G45950.1 2102 0.0
Ahg486615 jgi|Araly1|486615|fgenesh2_kg.5__2607__AT3G61415.1 1020 0.0
> Ahg483735 jgi|Araly1|483735|fgenesh2_kg.4__2795__AT2G45950.1
Length=1632
Score = 2102 bits (1138), Expect = 0.0
Identities = 1298/1370 (95%), Gaps = 31/1370 (2%)
Strand=Plus/Plus
Query 55 CTTCCACATCGCTTGGCCGCA---GCCGCCGCCGTCCGCCGTCGCTATCCACCACCAGAT 111
||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 20 CTTCCACATTGCTTGGCCGCAGCCGCCGCCGCCGTCCGCCGTCGATATCCACCACCAGAT 79
Query 112 TTTAAATCC-CCGCCGGAAGTTCACCTTCAATACCCAATATCTGTTATAAGTTTGGTGGA 170
||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 80 TTTAAATCCTCCGCCGGAAGTCCACCTTCATTACCCAATATCTGTTATAAGTTTGGTGGA 139
Query 171 TGAAGTTGCTGGATATTGCTTGAGATCGTCATCTGACCTCAAAACTCATAGTCCTGAGTA 230
|| |||||||||||||||||| |||||| |||||||| ||||| ||||||| ||||||||
Sbjct 140 TGGAGTTGCTGGATATTGCTTAAGATCGCCATCTGACTTCAAATCTCATAGACCTGAGTA 199
Query 231 CTTTGCTACTTGGCGTATTTATTTTATCTGGTTGGCCATTTTTGTCCTGAAAAGCTTCAG 290
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 200 CTTTGCTACTTGGCGTATTTATTTTATCTGGGTGGCCATTTTTGTCCTGAAAAGCTTCAG 259
Query 291 GATTTAAGGAAAACAGAGACTTTGTATAGTAGGGTTTGTCCTACTTATTGGAGCTGATGG 350
||| |||||||||||||||| |||| || || |||||||| ||
Sbjct 260 GATGTAAGGAAAACAGAGAC--------------TTTG---TA--TA--GGAGCTGAAGG 298
Query 351 TGTAATAATACA-TATAATAGCAGAAGACTGCGTCATCAAATCTATTATCAATGTCAGAA 409
|||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGTAATAATA-ATTATAATTGCAGAAGACTGCGTCATCAAATCTATTATCAATGTCAGAA 357
Query 410 GGTGATTTGGCCGTCATGAAACCAGAGACCATGAAGTCCTACATCTGGCTTCAAACTGCT 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGTGATTTGGCCGTCATGAAACCAGAGACCATGAAGTCCTACATCTGGCTTCAAACTGCT 417
Query 470 GATGGTTCAATCCAGCAAGTGGAACAAGAGGTTGCAATGTTCTGTCCCATGATTTGTCAA 529
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 418 GATGGTTCAATCCAGCAAGTGGAACAAGAGGTTGCAATGTTCTGTCCCATGATATGTCAA 477
Query 530 GAGGTAATACAGAAGGGTGTTGGATCCTCTAAAAATCATGCAATATCGCTTCCACAACGA 589
||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 478 GAGGTAATACAAAAGGGTGTTGGATCTTCTAAGAATCATGCAATATCGCTTCCACAACGA 537
Query 590 GTTAATCCAGCTATGTTCAGCTTGATTCTTGATTACTGCAGATTTCATCAACTGCCAGGA 649
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 538 GTTAATCCAGCTATGTTCAGCTTGATTCTTGATTATTGCAGATTTCATCAACTGCCTGGA 597
Query 650 CGTTCAAATAAGGAACGAAAAACTTATGATGAAAGATTCATCCGAATGGACACAAAGAGG 709
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 598 CGTTCAAATAAGGAACGAAAAACTTATGATGAAAGATTCATCAGAATGGACACAAAAAGG 657
Query 710 CTCTGTGAGTTGACCTCTGCCGCTGACAGTTTGCAGCTGAAACCTTTGGTTGATCTTACT 769
||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 658 CTCTGTGAGTTGACCTCAGCCGCTGATAGTTTGCAGCTGAAGCCTTTGGTTGATCTTACT 717
Query 770 AGTCGCGCACTTGCAAGAATCATTGAAGGAAAAAACCCTGAGGAGATACGAGAAATATTT 829
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 718 AGTTGCGCACTTGCAAGAATCATTGAAGGAAAAACCCCTGAGGAGATACGAGAAATATTT 777
Query 830 CATTTGCCTGATGACCTTACTGAGGAGGAGAAATTAGAGCCTCTGAAGAACTCAATGGAT 889
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 778 CATTTGCCTGATGACCTTACTGAGGAGGAGAAATTAGAGCCTCTGAAGAACACAATGGAT 837
Query 890 GATCCACGGATTCGACTACTGAATAGATTATATGCaaagaaaagaaaggaactgaaagaa 949
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 838 GATCCACGGATTCGACTACTGAATAGATTATATGCAAAGAAAAGAAAGGAGCTGAAAGAA 897
Query 950 agagagagattgaagaatgttgaggttgaagaaCACGTGGACGAACGTTCTGTGGATGAC 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AGAGAGAGATTGAAGAATGTTGAGGTTGAAGAACACGTGGACGAACGTTCTGTGGATGAC 957
Query 1010 CTGTTATCATTTATTAACGGCAGAGAT-CACAAGGCTG-TAAAGATGTCAAAGGgaaaaa 1067
||||||||||||||||| ||||||||| | ||||| || |||||||||||||||||||||
Sbjct 958 CTGTTATCATTTATTAATGGCAGAGATTC-CAAGG-TGGTAAAGATGTCAAAGGGAAAAA 1015
Query 1068 agaagaaaaagaaaaagaagGATCAGAAGATTGTTTCTTCAAATAACATTCATGACAAGG 1127
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1016 AGAAGAAGAAGAAAAAGAAGGATCAGAAGATTGTTTCTTCAAATGACATTCATGACAAGG 1075
Query 1128 AATCACATGATCTCCGTTCCAAACAACAATGTGTTGAAGAGATTGGGTCCAGCATGAGAG 1187
||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1076 AATCACATGATCTTCATTCCAAACAACAATGTGTTGAAGAGACTGGGTCCAGCATGAGAG 1135
Query 1188 AGGTACCCAACTTACTTAGTGCAGAAGATGACATTTCTACGCCAAATGCCGGGTCTGAAG 1247
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1136 AGGTACCCAACTTACCTAGTGCAGAAGATGACATTTCTACGCCAAAGGCCGGGTCTGAAG 1195
Query 1248 ATGAAGATATAGACGATGAAATCGATCCAGCCATGAGGGAACTGCTTGATAGAGAGGTTG 1307
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1196 ATGAAGATATAGACGATGAAATCGATCCAGCCATGAGGGAATTGCTTGATAGAGAGGTAG 1255
Query 1308 AAGATTTTGCTCAAAGACTGAACTCCAATTGGGTTCGGTCGCTAGGAAAAGAAAGAAGGC 1367
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1256 AAGATTTTGCTCAAAGACTGAACTCCAATTGGGTTCGGTCGCTAGGACAAGAAAGAAGGT 1315
Query 1368 CTGTACACTTCTCCATAAATGGCAACGGGACTACAAGACGGCATACAGGT 1417
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 CTGTACACTTCTCCATAAATGGCAACGGGACTACAAGACGGCATACAGGT 1365
Score = 320 bits (173), Expect = 2e-86
Identities = 255/290 (88%), Gaps = 23/290 (8%)
Strand=Plus/Plus
Query 1506 AGGTCAATCTCCATGACACGATTGAAGCTGATAATGGAACAGTTTTGGTTAAGTATGTGA 1565
|||||||||||||||||||||||| |||||| |||||||||||||||| | |||||||
Sbjct 1362 AGGTCAATCTCCATGACACGATTGGAGCTGAAAATGGAACAGTTTTGG-T---TATGTGA 1417
Query 1566 GCAAATAGAAAGAAAAGAGAATGGTTCACCAGTCAGTCACCACCGGCGTTTGATGCGTGT 1625
||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 GCAAATAGAGAG-AGAGAGAATGGTTCACCAGTCAGTCACCACCGGCGTTTGATGCGTGT 1476
Query 1626 CCTCACGTAACAGTTTTGATTTTGATTGTTTTACT--CT-CTAGTGGTCCATCTTTTTCT 1682
||||| ||||||||||||||||||||||||||||| || |||||| |||||| ||||||
Sbjct 1477 CCTCATGTAACAGTTTTGATTTTGATTGTTTTACTTTCTTCTAGTGATCCATCCTTTTCT 1536
Query 1683 TTGTAAACCCACGTT-CTACGTTAGTTAttttttttGTTCCAATTTGTGTTTAGGTTCCA 1741
||||||| ||||||| ||||||||| | |||||||||| || || ||||||||
Sbjct 1537 TTGTAAAACCACGTTTCTACGTTAGCT-TTTTTTTTGT--------GT-TT-AGGTTCCA 1585
Query 1742 TTGTTTTAGCATTTAGAAATTAATCATATACACACACTCTGATATCACCA 1791
||||||||||| ||||||| |||||| ||||||||||||||||||||
Sbjct 1586 TTGTTTTAGCAAC-AGAAATTTATCATA--CACACACTCTGATATCACCA 1632
> Ahg486615 jgi|Araly1|486615|fgenesh2_kg.5__2607__AT3G61415.1
Length=1565
Score = 1020 bits (552), Expect = 0.0
Identities = 878/1033 (85%), Gaps = 32/1033 (3%)
Strand=Plus/Plus
Query 397 ATCAATGTCAGAAGGTGATTTGGCCGTCATGAAACCAGAGACCATGAAGTCCTACATCTG 456
|||||||||||||||||| ||||| |||| |||||||||| ||||| || || || ||
Sbjct 258 ATCAATGTCAGAAGGTGAAATGGCCATCATTAAACCAGAGATGATGAAATCATATATATG 317
Query 457 GCTTCAAACTGCTGATGGTTCAATCCAGCAAGTGGAACAAGAGGTTGCAATGTTCTGTCC 516
|||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 318 GCTTGAAACTGCTGATGGCTCAATCCAACAAGTGGAACAAGAGGTTGCAATGTTCTGTCC 377
Query 517 CATGATTTGTCAAGAGGTAATACAGAAGGGTGTTGGATCCTCTAA-AAATCATGCAATAT 575
|||||| |||||||| ||||||||||||||||||||||| ||||| || | |||||||||
Sbjct 378 CATGATATGTCAAGAAGTAATACAGAAGGGTGTTGGATCTTCTAAGAACT-ATGCAATAT 436
Query 576 CGCTTCCACAACGAGTTAATCCAGCTATGTTCAGCT-TGATTCTTGATTACTGCAGATTT 634
| |||||||| ||||| |||||||| ||||| || | ||||| |||||||||||||||||
Sbjct 437 CTCTTCCACAGCGAGTCAATCCAGCCATGTTAAG-TCTGATTTTTGATTACTGCAGATTT 495
Query 635 CATCAACTGCCAGGACGTTCAAATAAGGAACGAAAAACTTATGATGAAAGATTCATCCGA 694
|||||| | || |||||||||||||||||||| |||| ||||||||||| |||||| ||
Sbjct 496 CATCAAGTACCTGGACGTTCAAATAAGGAACGTAAAATTTATGATGAAAAATTCATTCGG 555
Query 695 ATGGACACAAAGAGGCTCTGTGAGTTGACCTCTGCCGCTGACAGTTTGCAGCTGAAA-CC 753
||||| |||||||||||||||||||||||||| |||||||||||||||||| | ||| ||
Sbjct 556 ATGGATACAAAGAGGCTCTGTGAGTTGACCTCAGCCGCTGACAGTTTGCAG-TTAAAGCC 614
Query 754 TTTGGTTGATCTTACTAGTCGCGCACTTGCAAGAATCATTGAAGGAAAAAACCCTGAGGA 813
|||||||||||||||||||| || |||||| |||| ||||| || |||| |||||||||
Sbjct 615 GTTGGTTGATCTTACTAGTCGTGCCCTTGCACGAATTATTGAGGGGAAAACCCCTGAGGA 674
Query 814 GATACGAGAAATATTTCATTTGCCTGATGACCTTACTGAGGAGGAGAAATTAGAGCCTCT 873
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 GATACGCGAAATATTTCATTTGCCTGATGACCTTACTGAGGAGGAGAAATTAGAGCCTCT 734
Query 874 GAAGAACTCAATGGATGATCCACGGATTCGACTACTGAATAGATTATATGCaaagaaaag 933
||||||| ||||||||||||||||||||||| | |||||||||| ||||||||||||||
Sbjct 735 GAAGAACACAATGGATGATCCACGGATTCGATTGTTGAATAGATTGTATGCAAAGAAAAG 794
Query 934 aaaggaactgaaagaaagagagagattgaagaatgttgaggttgaagaaCACGTGGACGA 993
||||||| ||||||||||||||| | | |||| | | |||||||||||||| || || ||
Sbjct 795 AAAGGAATTGAAAGAAAGAGAGAAACTAAAGAGTATCGAGGTTGAAGAACATGTCGATGA 854
Query 994 ACGTTCTGTGGATGACCTGTTATCATTTATTAACGGCAGAGATCACAAGGCT-GTAAAGA 1052
|| |||||||||||||| |||||||||||||| |||||||||| ||||| | |||||||
Sbjct 855 GCGGTCTGTGGATGACCTATTATCATTTATTAATGGCAGAGATCCCAAGG-TAGTAAAGA 913
Query 1053 -TGTCAAAGGgaaaaaagaagaaaaagaaaaagaagGATCAGAAGATTGTTTCTTCAAAT 1111
| || ||| | ||||||||||| ||||||| |||||| || || | || | ||||||||
Sbjct 914 CT-TCTAAGAGCAAAAAGAAGAACAAGAAAAGGAAGGAGCATAAAAATGGTACTTCAAAT 972
Query 1112 --AACAT-TCA---T--G-ACAAGGAATCACATGATCTCCGTTCCAAA-CAACAATGTGT 1161
||||| | | | | | ||||| || ||| |||| | ||||||| || ||| |||
Sbjct 973 GGAACATGTGAAGCTTCGGAAAAGGATTCGCATAATCTTCATTCCAAATCA-CAAAGTGC 1031
Query 1162 TGA-A-----GA---GATTGGGTCCAGCATGAGAGAGGTACCCAACTTACTTAGTGCAGA 1212
||| | || || || |||| || || |||| ||| | |||||||||||| ||
Sbjct 1032 TGAGATTATTGACAAGACTGCGTCCTGCTTGGGAGATGTATCTAACTTACTTAGTATGGA 1091
Query 1213 AGATGACATTTCTACGCCAAATGCCGGGTCTGAAGATGAAGATATAGACGATGAAATCGA 1272
||||||||||| ||||||||| | | || |||||||| ||||||| |||||||| ||
Sbjct 1092 AGATGACATTTTTACGCCAAAAACTGAGTTTGAAGATGGTTATATAGATGATGAAATTGA 1151
Query 1273 TCCAGCCATGAGGGAACTGCTTGATAGAGAGGTTGAAGATTTTGCTCAAAGACTGAACTC 1332
|||||| ||| |||| |||||||||||||||| || |||||||||| ||| |||||||
Sbjct 1152 TCCAGCTTTGAAGGAAATGCTTGATAGAGAGGTAGAGGATTTTGCTCGGAGATTGAACTC 1211
Query 1333 CAATTGGGTTCGGTCGCTAGGAAAAGAAAGA-AGGCCTGTACACTTCTCCATAAATGGCA 1391
| |||||||| ||| ||||| ||||||| || ||||| ||||| |||||||||||||
Sbjct 1212 TAGTTGGGTTCTATCGATAGGACAAGAAAGGCAG-CCTGTGCACTTTTCCATAAATGGCA 1270
Query 1392 ACGGGACTACAAG 1404
|||||||||||||
Sbjct 1271 ACGGGACTACAAG 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67876816590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5