BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45970.1
Length=2480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935562 jgi|Araly1|935562|scaffold_403550.1 2562 0.0
Ahg918799 jgi|Araly1|918799|scaffold_100080.1 815 0.0
Ahg907042 jgi|Araly1|907042|Al_scaffold_0002_123 492 6e-138
> Ahg935562 jgi|Araly1|935562|scaffold_403550.1
Length=1619
Score = 2562 bits (1387), Expect = 0.0
Identities = 1543/1619 (95%), Gaps = 8/1619 (0%)
Strand=Plus/Plus
Query 559 AACAATTTTCCCGGAAAATCATGGAGATTTCCACTGCTCTAATGATTCTTTCGGCCATCA 618
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2 AAC-ATTTTCCCGGAAAATCATGGAGATTTCCACTGCTCTAATGATTCTTTCAGCCATCA 60
Query 619 CGGCGTATTTCTTATGGCTCACATTCATATCTCGTTGTCTTAAAGGTCCACGTGTTTGGC 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGGCGTATTTCTTATGGCTCACATTCATATCTCGTTGTCTTAAAGGTCCACGTGTTTGGC 120
Query 679 CCATATTGGGTAGTCTCCCTGGTCTTATAGAGAACTGCGAGCGAATGCACGACTGGATCT 738
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 121 CCATATTGGGTAGTCTCCCTGGTCTAATCGAGAACTGCGAGCGAATGCACGACTGGATCT 180
Query 739 CCGACAACCTCCGTGCTTGCTCCGGTACGTATCAGACATGCATCTGCGCCATTCCGTTTC 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCGACAACCTCCGTGCTTGCTCCGGTACGTATCAGACATGCATCTGCGCCATTCCGTTTC 240
Query 799 TAGCTAAGAAACAAGGTCTCGTCACTGTCACTTGCGATCCAAGAAACCTCGAGCATATTC 858
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 241 TAGCTAAGAAACAAGGTCTCGTGACTGTCACGTGCGATCCAAGAAACCTCGAGCATATTC 300
Query 859 TCAAGAATCGTTTTGATAATTACCCTAAAGGTCCAACGTGGCAAGCCGTTTTCCATGATC 918
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCAAGAATCGCTTTGATAATTCCCCTAAAGGTCCAACGTGGCAAGCCGTTTTCCATGATC 360
Query 919 TTCTCGGCCAAGGTATCTTTAACTCCGACGGTGACACGTGGCTTTTTCAGCGTAAGACCG 978
|||| || ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 TTCTTGGTCAAGGGATCTTTAACTCCGACGGTGACACGTGGCTTTTTCAGCGCAAGACCG 420
Query 979 CCGCCTTGGAGTTTACCACAAGGACACTCCGTCAAGCCATGGCTCGTTGGGTTAATAGAG 1038
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCGCTTTGGAGTTCACCACAAGGACACTCCGTCAAGCCATGGCTCGTTGGGTTAATAGAG 480
Query 1039 CGATCAAACTTAGGTTTCTGCCTATTCTTGAAAATGCTCGGCTCGGCTCTGAGCCGATTG 1098
||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 481 CGATCAAGCTTAGGTTTTTGCCTATTCTTGAAACGGCTCGGCTCGGCTCTGAGCCGATTG 540
Query 1099 ATCTTCAAGATTTGCTTCTTCGGCTTACATTTGATAATATCTGCGGCTTAACTTTCGGGA 1158
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 ATCTTCAAGATTTGCTTCTTCGGCTTACATTTGATAATATCTGCGGCTTGACTTTCGGGA 600
Query 1159 AAGACCCGCGGACTTGTGCACCGGGTCTACCGGTGAACACATTCGCGGTGGCTTTCGATC 1218
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 601 AAGACCCGCGGACTTGTGCACCGGGTCTTCCGGTGAACACATTCGCGGTAGCTTTCGATC 660
Query 1219 GAGCCACGGAGGCTTCGCTACAAAGGTTTATATTGCCGGAGATATTATGGAAGTTCAAGA 1278
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAGCCACCGAGGCTTCCCTACAAAGGTTTATATTGCCGGAGATATTATGGAAGTTCAAGA 720
Query 1279 GATGGCTCCGACTCGGCTTAGAAGTCAGCTTAACAAGAAGCTTGGTCCAGGTAGATAATT 1338
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 721 GGTGGCTCCGACTCGGCTTAGAAGTCAGCTTGACAAGAAGCTTGGTCCAGGTAGATAATT 780
Query 1339 ATTTGTCTGAGATTATTACGACACGTAAGGAAGAAATGATGACTCAGCATAATAATGGGA 1398
||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||
Sbjct 781 ATTTGTCTGAGATTATTACGACACGTAAGCAAGAAATGATGAGTCAGCATAACGATGGGA 840
Query 1399 AACACCACGACGATCTCTTATCGCGGTTCATCAAGAAGAAGGAGTCTTACTCCGACGAGA 1458
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 841 AACACCACGATGATCTCTTATCGCGGTTCATCAAGAAGAAGGAATCTTACTCCGACGAGA 900
Query 1459 CCCTCCAGCGCGTGGCGCTCAACTTCATCCTAGCTGGACGTGACACGTCATCAGTCGCGC 1518
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 901 CCCTCCAGCGCGTGGCACTCAACTTCATCCTAGCTGGACGTGACACGTCATCGGTCGCGC 960
Query 1519 TGAGCTGGTTCTTCTGGTTGATTACGCAGCATCCGGCCATAGAGGATAAAATCCTCCGTG 1578
||||||||||||||||||||||||||||||| ||| | |||||||||| ||||||||| |
Sbjct 961 TGAGCTGGTTCTTCTGGTTGATTACGCAGCACCCGACTATAGAGGATATAATCCTCCGGG 1020
Query 1579 AGATCTGTACCGTTCTGGTTGAGACACGTGGCGATGATGTGGCGTTATGGACGGACGAGC 1638
||||||| ||||||||| | ||||||||||||||||| |||||||||||||| |||||||
Sbjct 1021 AGATCTGCACCGTTCTGATCGAGACACGTGGCGATGACGTGGCGTTATGGACCGACGAGC 1080
Query 1639 CGCTTTCGTGCGAAGAGCTTGATCGATTGGTTTTTCTCAAGGCAGCGTTATCGGAGACTT 1698
|||||||||| |||||||| ||||| ||||||| ||||||||| |||||||||||||||
Sbjct 1081 CGCTTTCGTGTGAAGAGCTAGATCGTTTGGTTTATCTCAAGGCGGCGTTATCGGAGACTC 1140
Query 1699 TGAGGCTTTATCCTTCGGTGCCGGAGGATTCAAAACGCGCCGTGAAAGACGATGTGTTAC 1758
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1141 TGAGGCTTTATCCTTCGGTGCCGGAGGATTCGAAACGCGCCGTGAAAGACGATGTGTTGC 1200
Query 1759 CGGACGGGACATTTGTGCCGGCGGGATCTTCGATTACTTATTCGATTTACTCTGCGGGGA 1818
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1201 CGGACGGGACATTTGTGCCGGCGGGATCTTCGGTTACTTATTCGATTTACTCTGCGGGGA 1260
Query 1819 GGATGAAATCGACTTGGGGAGAGGATTGTTTGGAATTCAAACCAGAGAGATGGATTTCGC 1878
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 1261 GGATGAAATCGACTTGGGGAGAGGATTGCTTGGAATTCAAACCGGAGAGATGGATCTCGC 1320
Query 1879 AATCGGACGGTGGGAGATTCATCAATCATGATCCGTTTAAATTCGTTGCGTTCAATGCTG 1938
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1321 AATCGGACGGTGGGAGATTCATCAATCATGATCCATTTAAATTCGTGGCGTTCAATGCTG 1380
Query 1939 GCCCTAGGATCTGTCTGGGTAAGGATCTGGCGTATCTACAAATGAAATCAATTGCATCGG 1998
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1381 GCCCTAGGATCTGTCTAGGTAAGGATCTGGCTTATCTACAAATGAAATCAATTGCGGCGG 1440
Query 1999 CGGTTTTGCTCCGCCACCGGTTGACGGTGGTGACGGGGCATAAGGTGGAACAGAAGATGT 2058
|||||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1441 CGGTTTTGCTTCGTCACCGATTGACGGTGGTGACGGGGCATAAGGTGGAGCAGAAGATGT 1500
Query 2059 CGTTAACTTTATTCATGAAGTACGGTCTTTTAGTTAACGTCCACGAACGGGATTTAACGG 2118
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1501 CGTTAACTCTATTCATGAAGTACGGTCTTTTGGTTAACGTCCACGAACGGGATTTAACGG 1560
Query 2119 CAATCGCGGCGGATCTACGAG--A-G----TGTAAATCTAACGTCGTCAATGACGGGGT 2170
| |||||||||||| |||||| | | |||||||||||||||||||||||||||||
Sbjct 1561 CGATCGCGGCGGATTTACGAGTGAAGACAGTGTAAATCTAACGTCGTCAATGACGGGGT 1619
> Ahg918799 jgi|Araly1|918799|scaffold_100080.1
Length=1705
Score = 815 bits (441), Expect = 0.0
Identities = 1144/1475 (78%), Gaps = 82/1475 (6%)
Strand=Plus/Plus
Query 659 TAAA-GGTCCACGTGTTTGGCC-CATATTGGGTAGTCTCCCTGGTCTTATAGAG-AACTG 715
|||| ||||||||||| ||||| | | ||||||||||| |||||||| |||||| ||| |
Sbjct 100 TAAAGGGTCCACGTGTCTGGCCTC-TGTTGGGTAGTCTTCCTGGTCTGATAGAGCAAC-G 157
Query 716 CGAGC-GAATGCACGACTGGATCTCCGACAACCTCCGTGCTTGCTCCGGTACGTATCAGA 774
|| | ||||||| || |||||| |||| ||||||||||| ||| || || || ||||
Sbjct 158 TGA-CAGAATGCATGAATGGATCACCGAGAACCTCCGTGCGTGCGGTGGCACTTACCAGA 216
Query 775 CATGCATCTGCGCCATTCCGTTTC-TAGCTAAGAAACAAGGTCTCGTCACTGTCACTTGC 833
| || |||| ||| | || |||| | |||||||| ||||||||||| |||||||| ||
Sbjct 217 CTTGTATCTTTGCCGTGCC-TTTCTTGGCTAAGAAGCAAGGTCTCGTGACTGTCACGTGT 275
Query 834 GATCC-AAGAAACCTCGAGCATATTCTCAAGAATCGTTTTGATAATTACCCTAAAGGTCC 892
|| || ||| || ||||| || || ||||||| || || ||||| ||||||||||||||
Sbjct 276 GACCCTAAG-AATCTCGAACACATGCTCAAGACCCGGTTCGATAACTACCCTAAAGGTCC 334
Query 893 AACGTGGCAAGCCGTTTTCCATGATCTTCTCGGCCAAGGTATCTTT-AACTCCGACGGTG 951
|| |||||| |||| ||||| |||||||||||||||||||| ||| |||||||||||||
Sbjct 335 TACATGGCAATCCGTCTTCCACGATCTTCTCGGCCAAGGTAT-TTTCAACTCCGACGGTG 393
Query 952 ACACGTGGCTTTTTCAGCGTAAGACCGCCGC-CTTGGAGTTTACCACAAGGACACTCCGT 1010
|||| ||||| || || || || |||||||| ||| || || || |||||||| | ||
Sbjct 394 ACACCTGGCTCTTCCAACGCAAAACCGCCGCTCTT-GAATTCACAACAAGGACGTTGCGG 452
Query 1011 CAAGCCATGGCTCGTTGGGTTAATAGAGCG-ATCAAACTTAGGTTTCTG-CCTATTCTTG 1068
|||||||||| | | ||||| || ||| | || ||||| || ||||| || |||||||
Sbjct 453 CAAGCCATGGGTAGATGGGTAAACCGAG-GAATTAAACTCCGG-TTCTGTCCAATTCTTG 510
Query 1069 AAAATGCTC-GGCTCGGCTCTGAGCCGATTGATCTTCAAGATTTGCTTCTTCGGCTTACA 1127
||| |||| || | || || ||| ||||||| ||||| || | || ||||| |||
Sbjct 511 AAACGGCTCAAGC-CAAATCAGAACCGGTTGATCTCCAAGACTTAATACTACGGCTCACA 569
Query 1128 TTTGATAATATCTGCGGCTTAACTTTCGGGAAAGACCCGCGGACTTGTGCACCGGGTCTA 1187
|| || || || ||||| || | ||||| || || | || || || |||||||| ||
Sbjct 570 TTCGACAACATTTGCGGATTGGCGTTCGGTAAGGATACACGAACCTGCGCACCGGGGCTT 629
Query 1188 CCGGTGAAC-ACATTCGCGGT-GGCTTTCGATCGAGCCACGGAGGCTTCGCTACAAAGGT 1245
|| | |||| | || || | ||| |||||||||||||| || || ||||| ||| |||
Sbjct 630 CCCGAGAACGGC-TTTGC-CTCGGCATTCGATCGAGCCACTGAAGCCTCGCTTCAACGGT 687
Query 1246 TTAT-ATTGCCGGAGATATTA--TGGAAGTTCAAGAGATGGCTCCGACTCGGCTTAGAAG 1302
|||| | | |||||| | ||| |||||| | |||| |||||| | ||||| |||||||
Sbjct 688 TTATCA-TACCGGAG-T-TTATGTGGAAGCTGAAGAAATGGCTTGGGCTCGGTTTAGAAG 744
Query 1303 TCAGCTT-AACAAGAAGCTT-GGTCCAGGTAGAT-AATTATTT-GTCTG-AGATTATTAC 1357
| ||||| | | ||||||| || | | ||| || ||||| | ||| | |||| |
Sbjct 745 TAAGCTTGAGC-CGAAGCTTAGG-AGAAATCGATGAA-TATTTAG-CTGCTG-TTATAAA 799
Query 1358 GACACGTAAGGAAGAAATGATGACTCAGCATAATAATG-GGAA---A-C--A-CCACGAC 1409
||||||||| ||||| |||||| ||||| || || | |||| | | | ||||||
Sbjct 800 TACACGTAAGCAAGAATTGATGAGTCAGC--AAGAAAGTGGAACCCACCAGAGACACGAC 857
Query 1410 GATCTCTTATCGCGGTTCATCAAGAAG--AA-GGAGTCTTACTCCGACGA-GACCCTCCA 1465
|||||| | ||||| ||||| | |||| || || |||||| ||| | | |||||
Sbjct 858 GATCTCCTCTCGCGTTTCATGATGAAGAAAACCGAATCTTACAGTGAC-ACGTTTCTCCA 916
Query 1466 GC-GCGTGGCGCTCAACTTCATCCTAGCTGGACGTGACACGTCATCAGTCGCGCTGAGCT 1524
| | |||||||| ||||| ||||| ||||||||||||||||||||||| || |||||||
Sbjct 917 ACAG-GTGGCGCTTAACTTTATCCTTGCTGGACGTGACACGTCATCAGTTGCCCTGAGCT 975
Query 1525 GGTTCTTCTGG-TTGATTACGCA-GCATCCGGCCATAGAGGATAAAATCCTCCGTGAGAT 1582
|||| |||||| || || ||| | |||||| || | |||||||||||| |||| |||||
Sbjct 976 GGTTTTTCTGGCTT-ATCACG-ATGCATCCAACCGTCGAGGATAAAATCGTCCGCGAGAT 1033
Query 1583 CTG-TACCGTTCTGGTTGAGACACGTGG--C-GATGATGTGGCGT-TATGGACGGACGAG 1637
||| | |||||||| | ||||||||||| | ||||| || ||| | ||||| || |||
Sbjct 1034 CTGCT-CCGTTCTGATCGAGACACGTGGCACTGATGACGTCACGTCT-TGGACTGAGGAG 1091
Query 1638 CCGCTTTCGTGCGAAGAGCTTGATCGATTGGTTTTTCTCAAGGCAGCGTTATCGGAGACT 1697
|| || || ||| || | || || ||||||| || ||||| ||| | ||||||||
Sbjct 1092 CCTCTAGGGTTCGACGAAATCGACCGTTTGGTTTACCTGAAGGCGGCGATCTCGGAGACG 1151
Query 1698 TTGAGGCTTTATCCTTCGGTGCCGGAGGATTCAAAACGCGCCGTGAAAGACGATGTGTTA 1757
| |||||||| || ||||||||||| ||||| |||| || || ||| ||||| || |||
Sbjct 1152 CTCAGGCTTTACCCATCGGTGCCGGAAGATTCGAAACACGTCGAGAACGACGACGTTTTA 1211
Query 1758 CCGGACGGGACATTT-GTGCCGGCGGGATCTTCGATTACTTATTCGATTTACTCTGCGGG 1816
||||||||||| ||| || ||||||||||| ||| | || || ||||||||| | |||||
Sbjct 1212 CCGGACGGGAC-TTTCGTTCCGGCGGGATCATCGGTGACGTACTCGATTTACGCGGCGGG 1270
Query 1817 GAGGATGAAATCGACTTGGGGAGAGGATTGTTTGGAATTCAAACCAGAGAGATGGATTTC 1876
|||||||||||||||||||||||| |||||| ||||||| || || ||||||||||||||
Sbjct 1271 GAGGATGAAATCGACTTGGGGAGAAGATTGTCTGGAATTTAACCCGGAGAGATGGATTTC 1330
Query 1877 GCA-ATCGGACGGTGGGAGATTCATCAATCATGATCCGTTTAAATTCGTTGCGTTCAATG 1935
| |||| |||| | ||| |||||||| |||| | | ||||| ||||||||||
Sbjct 1331 TCCGATCG-ACGGAA--A-ATTTATCAATCACGATCAATATCGGTTCGTGGCGTTCAATG 1386
Query 1936 CTGGCCCTAGGATCTGTCT-GGGTAAGGATCTGGCGTATCTACAAATGAAATCAATTGCA 1994
|||| || |||||||| || ||| || |||||||||||||| || |||||| |||| ||
Sbjct 1387 CTGGACCAAGGATCTG-CTTGGGGAAAGATCTGGCGTATCTTCAGATGAAAACAATAGCG 1445
Query 1995 TCGGCGGTT-TTGCTCCGCCACCGG-TTGACGGTGGTGACGGGGCATAAGGTGGAACAGA 2052
||||||| || ||||| |||||| || |||||||| |||| ||||| ||||| ||||
Sbjct 1446 GCGGCGGTGCTT-CTCCGTCACCGGCTT-ACGGTGGTTCCGGGACATAAAGTGGAGCAGA 1503
Query 2053 AGATGTCGTTAACTTTATTCATGAAGTACGGTCTT 2087
|||||||||| || |||| |||||| |||| |||
Sbjct 1504 AGATGTCGTTGACGCTATTTATGAAGAACGGACTT 1538
> Ahg907042 jgi|Araly1|907042|Al_scaffold_0002_123
Length=1650
Score = 492 bits (266), Expect = 6e-138
Identities = 1090/1476 (74%), Gaps = 103/1476 (7%)
Strand=Plus/Plus
Query 659 TAAAGGTCCACGTGTTTGGCCCATATTGGGTAGTCTCCCTGGTCTTAT-AGAGAACTGC- 716
||||||||||||||| |||||| || |||| ||||| || | || || | | ||| ||
Sbjct 81 TAAAGGTCCACGTGTCTGGCCCTTAGTGGGCAGTCTTCCAGCACTCATCACA-AAC-GCT 138
Query 717 GAGCGAATGCACGACTGGATCTCCGACAACCTCCGTGC-T-TGCTCCGGTACGTATCAGA 774
| || |||||||||| ||| |||| ||||||| || | ||| ||||||||| || |
Sbjct 139 CACCGCATGCACGACTTCATCGCCGATAACCTCC--GCATGTGCGGCGGTACGTACCAAA 196
Query 775 CATGCATCTGCGCC-ATTCCGTTTC-TAGCTAAGAAACAAGGTCTCGTCACTGTCACTTG 832
| ||||| | | || || ||| ||| | |||||||||||||||| ||| ||||| || ||
Sbjct 197 CGTGCATATTC-CCGATCCCG-TTCTTGGCTAAGAAACAAGGTCACGTGACTGTTACGTG 254
Query 833 CGATCC-AAGAAACCTCGAGCATATTCTCAAGAATCGTTTTGATAATTACCCTAAAGGTC 891
|| || ||| || || ||||||||| | ||| || || ||||||||||| || ||||
Sbjct 255 TGACCCGAAG-AATCTGGAGCATATTTTGAAGTCCCGGTTCGATAATTACCCGAAGGGTC 313
Query 892 C-AACGTGGCAAGCCGTTTTCCATGATCT-TCTCGGCCAAGGTATCTTTAACTCCGACGG 949
| | | |||||| | || ||||| ||||| | | || | || |||||||| || || ||
Sbjct 314 CTAGC-TGGCAATCAGTCTTCCACGATCTAT-TAGGAGATGGGATCTTTAATTCAGATGG 371
Query 950 TGACACGTGGCTTTTTCAGCGTAAGACCGCCGCCTTGGAGTTTACCACAAGGACACTCCG 1009
||||||||||| |||||||||||||| || || ||||| ||||| ||| | || || ||
Sbjct 372 TGACACGTGGCGGTTTCAGCGTAAGACGGCTGCATTGGACTTTACTACACGTACGCTTCG 431
Query 1010 TCAAGCCATGGCTCGTTGGGTTAATAGAGCGATCAAACTTA-GGTTTC-TGCCTATTCTT 1067
||||||||||||||||||||| || |||| ||| || | || || |||| ||||||
Sbjct 432 CCAAGCCATGGCTCGTTGGGTTGATCGAGCCATC-AA-GAACCGTCTCGTGCCGATTCTT 489
Query 1068 GAAAATGCT-CG-GCTCGGCTCTGAGCCGATTGATCTTCAAGAT-TTGCTTCTT-CGGCT 1123
||| ||| | | || | |||||||||| |||||||||||| || ||| || |||||
Sbjct 490 GAATCGGCTATGAG-TC-GAGCTGAGCCGATCGATCTTCAAGATGTT-CTT-TTACGGCT 545
Query 1124 TACATTTGATAATATCTGCGGCTTAACTTTCGGGAAAGACCCGCGGAC-TTGTGCACCGG 1182
||||| ||||| || ||||||||||| ||||| ||||| || || || | | |||| |
Sbjct 546 CACATTCGATAACATTTGCGGCTTAACCTTCGGCAAAGATCCACGAACACTCT-CACC-G 603
Query 1183 GTC-TACCGGTGAACACATTCGCGGTGGCTTTCGATCGAGCCACGGAGGCTTCGCTACAA 1241
| | | || | ||| ||||||||||||||| ||| ||||||| || || | || |||
Sbjct 604 GACTTTCCCGAGAATGGATTCGCGGTGGCTTTTGATGGAGCCACCGAAGCCACACTTCAA 663
Query 1242 AGGTTTAT-ATTGCCGG-AGATATTATGGAAGTTCAAG-AGATGGCTCCGACTCGGCTTA 1298
||||||| | |||||| | |||| |||||| | || | |||||| || ||||||||
Sbjct 664 CGGTTTATCA-TGCCGGAATTTATT-TGGAAGAT-GAGAAAATGGCTACGGCTCGGCTTG 720
Query 1299 GAAG-TCAGCTTAACAAGAAGC-TTGGTCCAGGTAGATAATTATTTGTCTGAGATTATTA 1356
|| | | | | | | ||||| | | ||| || |||||||| || || ||||| ||||
Sbjct 721 GAGGATGATATGAGC-CGAAGCATCAG-CCACGTGGATAATTACTTATCAGAGATCATTA 778
Query 1357 CGACACGTAAGGAAGAAATGA-TGACTCAGC-ATAATAATGGGA-AACACCACGACGATC 1413
||||||||| | ||| | ||| ||| | | || || ||| | |||||||||||
Sbjct 779 ATACACGTAAGCTCG-AATTAGTGAGTCAACAACAA-GAT-GGATCCCGCCACGACGATC 835
Query 1414 TCTTATCGCGGTTCATCAAGAAGAAGGAGTCTTACTCCGACGAGA-CCCTCCAGCGCGTG 1472
| || || |||||||| ||||| || ||||||||||| || | | || | || |
Sbjct 836 TATTGTCACGGTTCATGAAGAAAAAAGAGTCTTACTCGGA-TAAATATCTTAAATACGCG 894
Query 1473 GCGCTCAACTTCATCCTAGCTGGACGTGACACGTCATCAGTCGCGCTGAGCTGGTTCTTC 1532
||| | || ||||||||||||||||||||||||||||| || || |||| |||||||||
Sbjct 895 GCGTTAAATTTCATCCTAGCTGGACGTGACACGTCATCGGTAGCTATGAGTTGGTTCTTC 954
Query 1533 TGGTTGATTACG-CAGCATCCGGCCA-TAGAGGATAAAATCCT--CCGTGAGATCTGTAC 1588
|||||| | | | | | || | | | || || |||||| | ||| ||||||| ||
Sbjct 955 TGGTTGGTCA-GTCTTAACCCT-CGAGTCGAAGAAAAAATCATAACCG--AGATCTGCAC 1010
Query 1589 CGTTCTGGTTGAGACACGTGGCGATGA-TGTGGCGTTA-TGGACGGACGAGCCGCTTT-C 1645
||||||| | ||||||||||| | | |||| || | ||||| || ||||| || |
Sbjct 1011 CGTTCTGATCAAGACACGTGGC-ACCAATGTGACGA-AGTGGACCGATGAGCCA-TTAAC 1067
Query 1646 GTGCGAAGAGCTTGATC-GATTGGTTTTTCTC-AAGGCAGCGTTATCGGAGACTTTGAGG 1703
| ||| || |||| | | ||||| | || || || || || ||||| || ||||||
Sbjct 1068 TTTCGACGAAATTGACCAG-TTGGTATA-CTTGAAAGCGGCATTGTCGGAAACATTGAGG 1125
Query 1704 CTTTATCCTTCGGTGCCGGAGGATTCAAAACGCGCCGT-GAAAGACGATGTGTTACCGGA 1762
|| ||||| ||||||||||| ||||||||| || || | | ||||||| ||||||||
Sbjct 1126 CTATATCCATCGGTGCCGGAAGATTCAAAATTCGTTGTTGCCA-ACGATGTTTTACCGGA 1184
Query 1763 CGGGACATTTGTGCCGGCGGGATCTT-CGATTACTTATTCGATTTACTCTGCGGGGAGGA 1821
||| |||||||| || | ||||| || |||| |||||||| || || | ||| | |
Sbjct 1185 CGGAACATTTGTTCCATCCGGATCAAACG-TTACATATTCGATATATTCGGTTGGGCGTA 1243
Query 1822 TGAAAT-CGACTTGGGGAGAGGATTGTTTGGAATTCAAACCAGAGAGATGGATTTC-GCA 1879
|||||| | | |||||| || |||||| | || || ||||| || |||||| || | |
Sbjct 1244 TGAAATTC-ATTTGGGGTGAAGATTGTCTCGAGTTTAAACCGGAAAGATGG-TTAGAGGA 1301
Query 1880 AT-CGGACGGTGGGAGAT-TCATCAATCATGATCCGTTTAAATTCGTTGCGTTCAATGCT 1937
| | | || | |||| | | || || || | |||||||| || ||||||||
Sbjct 1302 AAACCG--GGACG-AGATATG-T-AACCA--ATAC----AAATTCGTAGCATTCAATGCC 1350
Query 1938 GGCCCTA-GGATCTGTCTGGGTAAGGATCTG-GCGTATCTA-CAAATGAAATCAATTGCA 1994
|| || | |||| ||||| || || || || || || || || |||||||||||| |
Sbjct 1351 GGTCC-ACGGATTTGTCTAGGCAAAGA-CTTAGCTTA-CTTGCAGATGAAATCAATTAC- 1406
Query 1995 T-CGGCGGTTTTGCTCCGCCACCGGTTGACGGTGG-TGACGGGGCATA-AGGTGGAACAG 2051
| | || |||||||||| || ||| ||||||||| | |||| ||| || |||| |||
Sbjct 1407 TGCTTCGATTTTGCTCCGGCATCGGCTGACGGTGGCTC-CGGGACATCGAG-TGGAGCAG 1464
Query 2052 AAGATGTCGTTAACTTTATTCATGAAGTACGGTCTT 2087
|||||||| || || || |||||||||| ||||||
Sbjct 1465 AAGATGTCCTTGACGTTGTTCATGAAGTTTGGTCTT 1500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93473461230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5