BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45980.1
Length=1265
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935564 jgi|Araly1|935564|scaffold_403552.1 1136 0.0
> Ahg935564 jgi|Araly1|935564|scaffold_403552.1
Length=844
Score = 1136 bits (615), Expect = 0.0
Identities = 737/793 (93%), Gaps = 20/793 (3%)
Strand=Plus/Plus
Query 178 TGAGGAGCATCCTCCTCGAGGGAATGAATGGGAAGTCGTCTCGCTCACTTCATCAGCTTA 237
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 47 TGAGGAGCATCCTCCTCGTGGGAATGAATGGGAAGTCGTCTCGCTTACTTCTTCAGCTTA 106
Query 238 TGCTGCTGCTCCTGGTCCGTATAACGTTGAATCAAGAGATGTGCGCAAGTATGATGCTTA 297
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 107 CGCTGCTGCTCCTGGTCCGTATAACGTTGAATCAAGAGATTTGCGCAAGTATGATGCTTA 166
Query 298 CTATGGAGCGGAAACTTCACGTGATCTGTACATGTCTGAACACTTTGTATTCCCACCTAG 357
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 CTATGGAGCAGAAACTTCACGTGATCTGTACATGTCTGAACACTTTGTATTCCCACCTAG 226
Query 358 TGAGCATGAGAATTTACCCATTGATGAATC-TTTATTCGTGGCGGAGCAAAGAAAGGATG 416
||||||||||||||||||||||||||| | ||||||| || |||||||||||||||||
Sbjct 227 CGAGCATGAGAATTTACCCATTGATGAA-CATTTATTCAAGGAGGAGCAAAGAAAGGATG 285
Query 417 GCCGAGACTTGATGCTGGAAGGTCAGGGATTGTCTGATCAGTTTCATTATGAAGCTGGAA 476
|| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 286 GCGGAGACTTGATGCTCGAAGGCCAGGGATTGTCTGATCAGTTTCATTATGAAGCTGGAA 345
Query 477 ACAACCAACAGAGTATCTATGGTGAATCTGCGCTTGGTTCTTCTAGACACATGGAATCAT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 ACAACCAACAGAGTATCTATGGTGAATCTGCGCTTGGTTCTTCTAGACACATGGAATCAT 405
Query 537 TCGGAAGCGAATCAGCCGTGTATGAACACGGATTAGTTGATGC--AG--A---G-G---G 585
||||||| ||||||||| ||||||||||||| ||||||||||| || | | | |
Sbjct 406 TCGGAAGTGAATCAGCCATGTATGAACACGGGTTAGTTGATGCCGAGCCAAATGAGTATG 465
Query 586 -A-A---A--CTTAGATCTCCATTCTGATGGTGAGGGTGAAAAGGATGTaaaaaaaTCAA 638
| | | ||||||||||||||||||| ||||| ||||| |||| |||||||||
Sbjct 466 CAGAGGGAAACTTAGATCTCCATTCTGATACCGAGGGCGAAAAAGATGCCGAAAAATCAA 525
Query 639 CACACAACCTTCCTTGTGAAGCTTGGTGGAAAAGGAGAGCTATTTCTATGTATTCACGCA 698
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 CGCACAACCTTCCTTGTGAAGCTTGGTGGAAAAGGAGAGCTATTTCTATGTATTCACGCA 585
Query 699 CAAGAGAAGCAAATGCGATATGGTCCTTATTCTTTGCAGCTGCGGTCACAGGACTCGTAG 758
||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 586 CAAGAGAAGCAAACGCGATATGGTCCTTATTCTTTGCAGCTGCAGTCGCAGGACTCGTAG 645
Query 759 TTCTTGGTCAACGCTGGCAACAAGAGAGGTGGCAGGTTTTGCAACTCAAGTGGCAATCAA 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 TTCTTGGTCAACGCTGGCAACAAGAGAGGTGGCAGGTTTTGCAACTCAAGTGGCAATCAA 705
Query 819 GCATCAGTAGCGAGAAACTGGGCAGAGTACTTGAACCTCTCTCGCGCTTGAAAGACGTGA 878
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 706 GCATCAGTAGCGAGAAACTGAGCAGAGTACTCGAACCTCTCTCGCGCTTGAAAGACGTGA 765
Query 879 TTGTGAGAAGTAACCCACAAGCTTCTCTCGTAAGGAGTGGCTCCTCCAGTGAGGTCTAGA 938
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 766 TTGTGAGAAGTAACCCACAAGCTTCGCTCGTAAGGAGTGGTTCATCCAGTGAGGTCTAGA 825
Query 939 GACGAACTATGAT 951
| | || ||||||
Sbjct 826 GGCAAAGTATGAT 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47272417080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5