BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45990.1
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935565 jgi|Araly1|935565|scaffold_403553.1 1328 0.0
Ahg483745 jgi|Araly1|483745|fgenesh2_kg.4__2805__AT2G46000.1 268 5e-71
> Ahg935565 jgi|Araly1|935565|scaffold_403553.1
Length=847
Score = 1328 bits (719), Expect = 0.0
Identities = 796/834 (95%), Gaps = 2/834 (0%)
Strand=Plus/Plus
Query 81 AGGAGAATGGGAGATCTCTACGCTTTGGACTTCGATGGAGTTCTCTGTGATAGTTGTGGA 140
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 15 AGGAAAATGGGAGATCTCTACGCTTTGGACTTCGATGGAGTTCTCTGTGACAGTTGTGGA 74
Query 141 GAAAGCTCTCTATCTGCTGTTAAGGCAGCCAAAGTGAGATGGCCTGATTTGTTCGAAGGA 200
|| ||||||||||||||||| ||||| || ||||||||||||||| ||||||||||||||
Sbjct 75 GAGAGCTCTCTATCTGCTGTCAAGGCTGCGAAAGTGAGATGGCCTAATTTGTTCGAAGGA 134
Query 201 GTTGATTCCGCTTTAGAGGAATGGATCGTCGATCAAATGCATATTGTGAGACCTGTGGTT 260
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 135 GTTGATTCCGCTTTAGAGGAATGGATCGTCGATCAAATGCATATTGTGAGACCTGTTGTG 194
Query 261 GAAACTGGCTATGAAAATCTTCTACTTGTGCGGCTGTTATTGGAGACCAAGATACCGTCT 320
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 195 GAAACTGGCTATGAAAATCTTCTACTTGTGCGGCTGCTATTGGAGACCAAGATACCGTCT 254
Query 321 ATTCGAAAATCTTCAGTTGCAGAGGGGTTGACGGTTGATGGGATACTGGAGAGCTGGGCA 380
|| ||||||||||||||||||||||| ||||| | |||||||||| ||||| ||||||||
Sbjct 255 ATACGAAAATCTTCAGTTGCAGAGGGTTTGACTGCTGATGGGATATTGGAGGGCTGGGCA 314
Query 381 AAGTTTAAGCCCGTGATCATGGAAGCTTGGGATGAAGATAGAGATGCTTTGGTAGATTTG 440
||| |||||||||| ||||||||||||||||||||||||| ||||||| || | ||||||
Sbjct 315 AAGATTAAGCCCGTAATCATGGAAGCTTGGGATGAAGATAAAGATGCTCTGATCGATTTG 374
Query 441 TTTGGAAAAGTTAGAGATGATTGGATTAACAAGGACTTGACAACTTGGATTGGTGCCAAT 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 TTTGGAAAAGTTAGAGATGATTGGATTAACAAGGACTTGACAACTTGGATTGGTGCCAAT 434
Query 501 AGATTCTACCCAGGAGTTTCAGATGCACTGAAATTTGCCAGCTCAAAGATTTATATCGTT 560
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 AGATTCTATCCAGGAGTTTCAGATGCACTGAAATTTGCCAGCTCAAAGATTTATATCGTT 494
Query 561 ACCACGAAACAGGGCCGCTTTGCAGAAGCGTTACTGCGTGAAATAGCAGGTGTAATCATA 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 ACCACGAAACAGGGCCGCTTTGCAGAAGCGTTACTGCGTGAAATAGCAGGTGTAATCATA 554
Query 621 CCATCAGAAAGGATTTATGGTTTGGGTTCAGGGCCAAAGGTGGAAGTTCTAAAGCTACTT 680
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 555 CCATCAGAAAGGATTTATGGTTTGGGTTCAGGGCCAAAGGTGGAAGTGCTAAAGCTACTT 614
Query 681 CAAGATAAACCAGAACATCAGGGCTTGACGCTGCATTTCGTGGAAGACAGACTCGCAACG 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 CAAGATAAACCAGAACATCAGGGCTTGACGCTGCATTTCGTGGAAGACAGACTCGCAACG 674
Query 741 CTGAAAAATGTCATAAAAGAGCCTGAATTAGACAAATGGAGTTTATACCTAGGAACCTGG 800
||||| |||||||| ||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 675 CTGAAGAATGTCATCAAAGAGCCTGAATTAGACAAATGGAATTTATACCTAGGAAATTGG 734
Query 801 GGATACAACACTGAGAAAGAGAGAGCTGAAGCAGCAGGCATTCCCAGGATTCAGGTTATT 860
|| |||||||| |||||||||||||| ||||||||| ||||| ||||||||||||||||
Sbjct 735 GGCTACAACACCGAGAAAGAGAGAGCAGAAGCAGCAAGCATTTCCAGGATTCAGGTTATC 794
Query 861 GAGCTCTCCACGTTTAGCAATAAGCTTAAATGAGTGCATATACTCATTGGAAAA 914
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 795 GAGCTCTCCACGTTTAGCAATAAGCTTAAATGAGTGCATA--CTCATCGGAAAA 846
> Ahg483745 jgi|Araly1|483745|fgenesh2_kg.4__2805__AT2G46000.1
Length=869
Score = 268 bits (145), Expect = 5e-71
Identities = 186/204 (91%), Gaps = 9/204 (4%)
Strand=Plus/Minus
Query 876 AGCAATAAGCTTAAATGAGTGCATATACTCATTGGAAAAGAAACAAAGCTTTCCTCTTTA 935
|||||||||||||||||||||| ||||| || || || ||| ||||||||||| ||||
Sbjct 869 AGCAATAAGCTTAAATGAGTGC--ATACTGATCGG--AA-AAA-AAAGCTTTCCTATTTA 816
Query 936 TTGTATTCTACGGCATTCAACGGAAACTAAAAACCAAACATGTTTAGGTAAGATTCAGTA 995
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||
Sbjct 815 TTGTATTCTACGGCATTCAACGGAAATTAAAAAACAAACATGTTTAGGTAAGATTC--TA 758
Query 996 AAAGAGTTGAACTTTCAGTACTACCC-ATTATAGAAGCTTTTCTGTGACCTATAATTCAT 1054
|||||||||||| ||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct 757 AAAGAGTTGAACCTTCAGTACTACCCGAATATAAAAGCTTTTCTGTGACCTATAATTCAT 698
Query 1055 CCTTAGTAAGATCATTCTTGTTAC 1078
|||| |||||||||||||||||||
Sbjct 697 CCTTGGTAAGATCATTCTTGTTAC 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40181554518
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5