BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46000.1
Length=929
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483745 jgi|Araly1|483745|fgenesh2_kg.4__2805__AT2G46000.1 1203 0.0
> Ahg483745 jgi|Araly1|483745|fgenesh2_kg.4__2805__AT2G46000.1
Length=869
Score = 1203 bits (651), Expect = 0.0
Identities = 788/852 (92%), Gaps = 18/852 (2%)
Strand=Plus/Plus
Query 78 TGCCGATGCAGTCTCTCTTCCTCTGTTTCTGATTCCTGAATAAATTTGTTAAACGATGGA 137
||||| |||| ||||||||| ||||| ||||||||||||||||| |||||| |||||||
Sbjct 34 TGCCGTTGCA-TCTCTCTTCTTCTGTATCTGATTCCTGAATAAAGTTGTTATTCGATGGA 92
Query 138 GAAGATCGTTCGTTCTTCTTCGCTGATTCTACTTGTTGGCCTCCTTCTTTTTATGAATTT 197
||||||||||||| ||||||| ||| |||||||| |||||||||||| | ||| |
Sbjct 93 GAAGATCGTTCGTCCTTCTTCTCTGGTTCTACTTTTTGGCCTCCTTC---TGATG-A--- 145
Query 198 TCACGGATTT-GTCCGGATCGCCGAAGCAACGAAGCGACGGATCGAGATCTCCGATGACC 256
|| | |||| |||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 146 TCTCTAATTTCGTCCAGATCGCCGAAGCAGGGAAGCGACGGATCGAGATCTCCGATGACC 205
Query 257 TAGACGACGTTGAAGACAATGAAGAAGACGAGTCATGGAAAGAGTGGGGGAAGAAAGCAA 316
||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||||||||
Sbjct 206 TAGACGACGTTGAAGACAATGAAGAAGACGAATTATGGAAATAGTGGGGTAAGAAAGCAA 265
Query 317 CGACCCCGGAATTTGATCCGCCTCCGGATTTCACCAATATGGGATTCGATCAGATCCAAG 376
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 266 CCACCCCGGAATTTGATCCGCCTCCGGATTTTACCAATATGGGATTCGATCAGATCCAGG 325
Query 377 AGGAAATGGCTAAACGGACTTTTGGAACCGTCGTCGGTTTCGTCAAGCTCCGGTTAGGCG 436
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 326 AGGAAATGGCTAAACGGACTTTTGGAACGGTCGTCGGTTTCGTGAAGCTCCGGTTAGGCG 385
Query 437 TCCCCCGTACCAAGGATGTGGTGATTGATATTGCTATGAAATGGACAAAAGTTTTAAGAA 496
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 386 TCCCCCGTACCAAGGATATGGTGATTGATATTGCTATGAAATGGACAAAAGTTTTGAGAA 445
Query 497 CAGGAGGGATAGGAGTAAGATTCATGGCTGTAGATCGAAGCACAGTGATGTTCAATATGC 556
|||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 446 CAGGAGGGATAGAAGTAAGATTCATGGCTGTAGATCGAAGCACGGTCATGTTCAATATGC 505
Query 557 AAAATGGGAAGCTTGTGACTGAGCTAAGGGAATTCGTGCTGAGCCAAGAAGAAGCTTACG 616
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 506 AAAATGGGAAGCTAGTGACTGAGCTAAGGGAGTTCGTGCTGAGCCAAGAAGAAGCTTACG 565
Query 617 AGGTCAAGATAGGGAAGCAAGAGTTTAGAAGACCTGGAGATCCTCCATTTGAAGATGTCT 676
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 566 AGGTTAAGATAGGGAAGCAAGAGTTTAGAAGACCTGGAGACCCTCCATTTGAAGATGTCT 625
Query 677 TTGACAAATTTCAAGCTGAGCAAAGGAAAGATCACGAAGATGGTGATGGTAACAAGAATG 736
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 626 TTGACAAACTTCAAGCTGAGCAAAGGAAAGATCACGAAGATGGTGATAGTAACAAGAATG 685
Query 737 ATCTTACTAAGGATGAATTATAGGTCACAGAAAAGCTTCTATAAT-GGGTAGTACTGAAA 795
||||||| |||||||||||||||||||||||||||||| |||| | |||||||||||||
Sbjct 686 ATCTTACCAAGGATGAATTATAGGTCACAGAAAAGCTTTTATATTCGGGTAGTACTGAAG 745
Query 796 GTTCAACTCTTTTACTGAATCTTACCTAAACATGTTTGGTTTTTAGTTTCCGTTGAATGC 855
|||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 746 GTTCAACTCTTTTA--GAATCTTACCTAAACATGTTTGTTTTTTAATTTCCGTTGAATGC 803
Query 856 CGTAGAATACAATAAAGAGGAAAGCTTTGTTTCTTTTCCAATGAGTATATGCACTCATTT 915
|||||||||||||||| ||||||||||| ||| || || || ||||| ||||||||||
Sbjct 804 CGTAGAATACAATAAATAGGAAAGCTTT-TTT-TT--CCGATCAGTAT--GCACTCATTT 857
Query 916 AAGCTTATTGCT 927
||||||||||||
Sbjct 858 AAGCTTATTGCT 869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34463116968
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5