BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46030.1
Length=862
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483748 jgi|Araly1|483748|fgenesh2_kg.4__2808__AT2G46030.1 1186 0.0
> Ahg483748 jgi|Araly1|483748|fgenesh2_kg.4__2808__AT2G46030.1
Length=836
Score = 1186 bits (642), Expect = 0.0
Identities = 786/850 (92%), Gaps = 31/850 (4%)
Strand=Plus/Plus
Query 14 tctctctctctctctctAAAACCAGATTCTTAATagaagaagaagaagaagaagaggaaa 73
||||||||||||||||||||||||||||| | | | | ||||||||||||||||
Sbjct 4 TCTCTCTCTCTCTCTCTAAAACCAGATTC-T--T----G-A-TAGAAGAAGAAGAGGAAC 54
Query 74 ggagaaATCTGCCATGGCGTCGCCGAGCAAACGTCGAGAGATGGATATGATGAAACTGAT 133
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 55 GGAG-AATCTGCCATGGCTTCGCCGAGCAAACGTCGAGAGATGGATATGATGAAATTGAT 113
Query 134 GATGAGTGATTACAAGGTGGATACTGTCAACGACGATTTGCAAATGTTCTATGTCACATT 193
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 114 GATGAGTGATTACAAGGTGGATACAATCAACGACGATTTGCAAATGTTCTATGTCACATT 173
Query 194 CCATGGACCCACTGACAGTCTTTATCAGGGGGGTGTATGGAAGATAAAAGTGGAACTTCC 253
|||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 174 CCATGGACCCACTGACAGCCTTTATCAGGGAGGTGTATGGAAGATTAAAGTCGAACTTCC 233
Query 254 CGAAGCTTATCCATACAAATCTCCATCTGTTGGATTTGTCAACAAGATTTATCACCCTAA 313
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 234 CGAAGCTTATCCATACAAATCTCCATCTGTAGGATTTGTTAACAAGATTTATCACCCTAA 293
Query 314 TGTCGATGAATCTTCTGGTGCTGTTTGCTTAGATGTTATAAACCAGACTTGGAGCCCAAT 373
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 294 TGTCGATGAATCTTCTGGTGCAGTTTGCTTAGATGTTATAAACCAGACATGGAGCCCAAT 353
Query 374 GTTTGATCTTATAAATGTGTTCGAATCCTTCCTTCCGCAACTGCTTCTATATCCAAACCC 433
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 354 GTTTGATCTTATAAATGTTTTCGAATCCTTCCTTCCGCAACTGCTTCTGTATCCAAACCC 413
Query 434 ATCAGATCCATTTAATGGAGAAGCCGCTTCTCTGTTGATGCGAGACCGTGCAGCCTATGA 493
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 414 ATCAGATCCATTTAATGGAGAAGCTGCTTCTCTGTTGATGCGAGACCGCGCAGCCTATGA 473
Query 494 GCTCAAAGTGAAAGAATATTGTGAGAAATATGCAAAACC--AGA-GGAGATTTTAAGtga 550
||| ||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct 474 GCTGAAAGTGAAAGAATATTGTGAGAAATATGCAAAACCCGAGAAGGAGAATTTAAGTGA 533
Query 551 tgatgatga---tga------tgatagcatgagcgaagatggttcggactctgatgatga 601
||||||||| ||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 534 TGATGATGACGATGACGACGATGATAGCATGAGCGAAGATGGCTCGGACTCTGATGATGA 593
Query 602 tgaCGACGACGAAATCGTTGGGAAAGCCGATCCATGACTGTTTACAAATCAATCTTTCTT 661
|||||| || || ||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 594 TGACGATGA--AA-TCGTTGGAAAAGCCGATCCATGACTGTT-ACAAATCAATCTTTCTT 649
Query 662 TGCACTTTCATTACTCCATCTTCAACTTTAAACCAGTAATGCTCATTGCAAAGAGGAGAG 721
||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 650 TGCACTTTCATTAGTCCATCTTCAAATTTAAACCATTAATGCTCATTGCAAAGAGGAGAG 709
Query 722 AAGCTTTCCTCTGTAAATTTGTAAAGACTT-ATCATTCTTTAGGACTATTGAAATCTCtt 780
|| ||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 710 AAACTTTCCTCTGTAAATTTGTAAAGACTTGAT-ATTCTTTAGGACTATTGAAATTTCTT 768
Query 781 ttttttAAACAGTAGATAAAATGTAACAATTTGCCATCTCACACCAATG-AAACATTAAT 839
||| |||||||||||||||||||||||||||| |||||||| |||| |||||| |||
Sbjct 769 TTTA--AAACAGTAGATAAAATGTAACAATTTGCAATCTCACATTAATGGAAACATGAAT 826
Query 840 CCATATCTCA 849
||||||||||
Sbjct 827 CCATATCTCA 836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31908881529
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5