BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46070.1
Length=1325
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322261 jgi|Araly1|322261|fgenesh1_pm.C_scaffold_4002318 1993 0.0
Ahg918805 jgi|Araly1|918805|scaffold_100086.1 492 3e-138
> Ahg322261 jgi|Araly1|322261|fgenesh1_pm.C_scaffold_4002318
Length=1221
Score = 1993 bits (1079), Expect = 0.0
Identities = 1142/1173 (97%), Gaps = 2/1173 (0%)
Strand=Plus/Plus
Query 1 CAAAAGCCCTTCTTCTTGGTTTCTCTCGTTCTCGGTCTGATCATTGCATCATCATGTCTG 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 50 CAAAAGCCCTTCTTCTTGGTCTCTCTCGTTCTCGGTCTGATCATTGCATCATCATGTCTG 109
Query 61 GAGAATCAAGCTCTGGTTCTACCGAACATTGCATCAAAGTTGTACCGACACACGGTGGCC 120
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 110 GAGAATCAAGCTCTGGTTCTACCGATCATTGCATCAAAGTTGTACCGACACATGGTGGCC 169
Query 121 GCTATGTTCAGTACAACGTTTATGGACAACTCTTTGAAGTTTCCAGAAAGTATGTCCCTC 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 170 GCTATGTTCAGTACAACGTTTATGGACAACTCTTTGAAGTTTCCCGAAAGTATGTCCCTC 229
Query 181 CTATTCGTCCCATTGGTAGAGGCGCTTGCGGTATTGTCTGTGCTGCGGTGAACTCAGTGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 CTATTCGTCCCATTGGTAGAGGCGCTTGCGGTATTGTCTGTGCTGCGGTGAACTCAGTGA 289
Query 241 CTGGAGAGAAAGTGGCTATTAAGAAGATCGGTAATGCTTTTGATAACATCATCGATGCTA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 290 CTGGAGAGAAAGTGGCTATTAAGAAGATCGGTAATGCTTTTGATAACATCATTGATGCTA 349
Query 301 AGAGAACGCTACGTGAAATTAAACTTCTCAGGCATATGGATCATGAGAACGTTATAACCA 360
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 AGAGAACTTTACGTGAAATTAAACTTCTCAGGCATATGGATCATGAGAACGTTATAACCA 409
Query 361 TCAAAGATATTGTAAGACCTCCGCAACGAGATATCTTCAATGATGTCTACATTGTCTATG 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 410 TCAAAGATATTGTAAGACCTCCGCAACGAGATATCTTCAACGATGTCTACATTGTCTATG 469
Query 421 AGTTAATGGACACTGATCTTCAGCGAATCCTCCGTTCTAACCAAACACTGACCAGTGATC 480
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 470 AGTTAATGGACACTGATCTTCAAAGAATCCTCCGTTCTAACCAAACACTGACCAGTGATC 529
Query 481 AATGCCGTTTCCTAGTATACCAGCTCTTAAGAGGGCTCAAATACGTGCACTCGGCCAACA 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 530 AATGCCGCTTCCTAGTATACCAGCTCTTAAGAGGGCTCAAATACGTGCACTCGGCGAACA 589
Query 541 TATTACATCGTGATCTAAGGCCAAGCAACGTGCTACTTAACTCGAAAAACGAGCTAAAGA 600
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 590 TATTACATCGTGATCTAAGGCCAAGCAACGTGCTACTTAACTCGAAAAATGAGCTGAAGA 649
Query 601 TTGGTGATTTTGGGCTTGCAAGAACAACTTCCGACACAGACTTCATGACTGAATATGTCG 660
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 650 TTGGTGATTTTGGGCTTGCAAGAACAACTTCAGACACAGACTTCATGACTGAATATGTCG 709
Query 661 TTACCCGTTGGTACAGGGCTCCTGAGTTGCTTCTTAACTGCTCAGAGTACACCGCAGCTA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 TTACCCGTTGGTACAGGGCTCCTGAGTTGCTTCTTAACTGCTCAGAGTACACCGCAGCTA 769
Query 721 TTGATATTTGGTCTGTTGGCTGCATACTCGGCGAAATCATGACGGGACAACCGTTGTTTC 780
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 770 TTGATATTTGGTCTGTTGGTTGCATACTCGGCGAAATCATGACGGGACAGCCGTTGTTTC 829
Query 781 CAGGCAAAGATTATGTTCATCAGCTTAGGCTTATAACAGAGCTTGTAGGCTCTCCAGACA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 CAGGCAAAGATTATGTTCATCAGCTTAGGCTTATAACAGAGCTTGTAGGCTCTCCAGACA 889
Query 841 ATTCCAGCCTCGGCTTCCTTCGCAGTGACAACGCAAGAAGATACGTCAGGCAACTTCCGC 900
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 890 ATTCCAGCCTGGGCTTCCTTCGCAGTGACAACGCAAGAAGGTATGTCAGGCAACTTCCGC 949
Query 901 GATACCCGAAACAACAGTTTGCTGCTAGATTCCCGAAAATGCCCACTACGGCTATCGATT 960
||||||| ||||| |||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 950 GATACCCTAAACAGCAGTTTGCTGCTAGATTCCCGAAAATGCCCTCTACCGCTATCGATT 1009
Query 961 TGCTTGAGAGAATGCTCGTCTTTGATCCTAACCGGCGCATCTCAGTCGATGAAGCCCTTG 1020
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 TGCTGGAGAGAATGCTCGTCTTTGATCCTAACCGGCGCATCTCAGTCGATGAAGCCCTTG 1069
Query 1021 GCCATGCTTACCTATCACCGCACCATGATGTG-GCCAAAGAACCGGTCTGTTCGACTCCT 1079
||||||||||||||||||||||||| |||||| || ||||||||||| ||||||||||||
Sbjct 1070 GCCATGCTTACCTATCACCGCACCACGATGTGAGC-AAAGAACCGGTTTGTTCGACTCCT 1128
Query 1080 TTCAGCTTTGATTTCGAACATCCTTCTTGCACAGAAGAACACATAAAGGAGCTTATCTAC 1139
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 TTCAGCTTTGATTTCGAGCATCCTTCTTGCACAGAAGAACACATAAAGGAGCTTATCTAC 1188
Query 1140 AAGGAGTCTGTCAAATTCAATCCTGACCACTGA 1172
||||||||||||||||||||||||||||| |||
Sbjct 1189 AAGGAGTCTGTCAAATTCAATCCTGACCATTGA 1221
> Ahg918805 jgi|Araly1|918805|scaffold_100086.1
Length=1205
Score = 492 bits (266), Expect = 3e-138
Identities = 577/725 (80%), Gaps = 30/725 (4%)
Strand=Plus/Plus
Query 112 ACGGTGGCCGCTATGTTCAGTACAACGTTTATGGACAA-CTCTTTGAAGTTTC-CAGAAA 169
||||||| || ||||||||||| || || |||||| || ||||| |||||||| || |||
Sbjct 76 ACGGTGGTCGTTATGTTCAGTATAATGTCTATGGA-AACCTCTTCGAAGTTTCTCA-AAA 133
Query 170 GTATGTCCCTCCTATTCGTCCCATTGGTAGAGGCGCTTGC-GGTATTGTCTGTGCTGCGG 228
||||| |||||| ||||||| || || |||||||||| | || || |||||||||||
Sbjct 134 ATATGTTCCTCCTCTTCGTCCTATCGGCAGAGGCGCTT-CTGGCATCGTCTGTGCTGC-A 191
Query 229 T-GAACTCAGTGACTGGAGAGAAAGTGGCTATTAAGAAGATCGGTAATGCTTTTGATAAC 287
| ||| || | ||| || ||| |||| || || |||||||| ||||||||||||| |||
Sbjct 192 TGGAATTCGGAGACGGGTGAGGAAGTAGCGATCAAGAAGATTGGTAATGCTTTTGGCAAC 251
Query 288 ATCATCGATGCTAAGAGAACGCT-ACGTGAAATTAAACTTCTCAGGCATATGGATCATGA 346
|| ||||| ||||||||||| | | | || ||||| ||||| | |||||||||||||||
Sbjct 252 ATTATCGACGCTAAGAGAACTTTGA-GAGAGATTAAGCTTCTTAAGCATATGGATCATGA 310
Query 347 GAACGTTATAACCATCAAAGATATTGTAAGACCTCCGCAACGAGATATCTTCAATGATG- 405
|| || || |||| ||||| || ||||||| ||||| | ||| | |||||||||||
Sbjct 311 CAATGTCATTGCCATTAAAGACATAATAAGACCACCGCAGCCAGACAACTTCAATGATGT 370
Query 406 TCTACATTGTCTATGAGTTAATGGACACTGATCTTCAGCGA-ATCCTCCGTTCTAACCAA 464
|| |||||||||||||||||||||||||||||||||| | | || | || |||||||||
Sbjct 371 TC-ACATTGTCTATGAGTTAATGGACACTGATCTTCATC-ACATTATACGCTCTAACCAA 428
Query 465 ACACTGACC-AGTGATCAATGC-CG-TT-T-CCTAGTATACCAGCTCTTAAGAGGGCTCA 519
| | || | |||||| | | || || | ||| |||| | || | || ||||| ||||
Sbjct 429 CCGTTAACTGA-TGATCATT-CACGGTTCTTCCT-GTAT-C-AGTTGTTGAGAGGACTCA 483
Query 520 AATACGTGCACTCGGCCAACATATTACATCGTGATCTAAGGCCAAGCAACGTGCTACTTA 579
| || ||||| || || || |||| ||||||||| ||| ||||| ||| |||| || |
Sbjct 484 AGTATGTGCATTCAGCTAATGTATTGCATCGTGATTTAAAACCAAGTAACTTGCTCCTGA 543
Query 580 ACTCGAAAAACGAG-C-TAAAGATTGGTGATTTTGGGCTTGCAAGAAC-AACTTCCGACA 636
| | | ||| | | | | |||||||| ||||||||||||||||| || || | | || |
Sbjct 544 A-T-GCAAATTGTGACCTCAAGATTGGGGATTTTGGGCTTGCAAGGACTAAAT-CAGAGA 600
Query 637 CAGACTTCATGACTGAATATGTCGTTACCCGTTGGTACAGGGCTCCTGAGTTGCTTCTTA 696
||||||||||||| |||||||||||||| ||||||||| | ||||| ||||| || ||||
Sbjct 601 CAGACTTCATGACAGAATATGTCGTTACACGTTGGTACCGAGCTCCAGAGTTACTCCTTA 660
Query 697 ACTGCTCAGAGTACACCGCAGCTATTGATATTTGGTCTGTTGGCTGCATACTCGGCGAAA 756
| |||||||| ||||| |||||||| |||||||||||||| || || |||||||| ||||
Sbjct 661 ATTGCTCAGAATACACTGCAGCTATCGATATTTGGTCTGTCGGTTGTATACTCGGTGAAA 720
Query 757 TCATGACGGGACAACCGTTGTTTCCAGGCAAAGATTATGTTCATCAGCTTAGGCTTATAA 816
| ||||| || | ||||| ||||| |||| |||||||||||| |||||||| || || |
Sbjct 721 TAATGACCAGAGAGCCGTTATTTCCGGGCAGAGATTATGTTCAGCAGCTTAGACTCATCA 780
Query 817 CAGAG 821
| |||
Sbjct 781 CTGAG 785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49559792100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5