BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46080.1
Length=1469
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935574 jgi|Araly1|935574|scaffold_403562.1 1805 0.0
> Ahg935574 jgi|Araly1|935574|scaffold_403562.1
Length=1084
Score = 1805 bits (977), Expect = 0.0
Identities = 1041/1073 (97%), Gaps = 0/1073 (0%)
Strand=Plus/Plus
Query 217 TCTAGCAAAATGAGCCGACCACAAGATCCACCCCGAGGTTTCTTCCCATTTGGAAATCCC 276
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 12 TCTAGCAAAATGAGCCGAGCACAAGATCCACCACGAGGTTTCTTCCCATTTGGAAATCCC 71
Query 277 TTTCGGATGTTATCATCAAAGGGATCAGATTTATCGCCATGGCTACTTTCTCTATTGAAC 336
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 72 TTTCGGATGTTATCACCAAAGGGCTCAGATTTATCGCCATGGCTACTTTCTCTATTGAAC 131
Query 337 GGCTTTGAGCTACGTTTGGAAGAGAGACTGAAGAAACTTATGCCTAAGAACAAAGATGAC 396
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 132 GGCTTTGAGCTACGTTTGGAAGAGAGACTGAAGAAACTTATGCCTAAGAGCAAAGATGAA 191
Query 397 ATCCTCACTTTATCCTGGATGAAGCTAGCTATGGAGTCACTCTGCGAGACTCATAAGAAC 456
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 192 ATCCTCACTTTATCGTGGATGAAGCTAGCTATGGAGTCACTCTGCGAGACTCATAATAAC 251
Query 457 ATTAACACTCTCATTACTGATCTCCAGCTTCCTGTCTCTGATTGGGAAGAGAAATGGGTT 516
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 ATAAACACTCTCATCACTGATCTCCAGCTTCCTGTCTCTGATTGGGAAGAGAAATGGGTT 311
Query 517 GATGTTTACCTCAACATAAGCGTTAGGTTACTAGATCTCTGTAATGCCTTTAGCTCTGAG 576
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 312 GATGTTTACCTCAACATAAGCGTTAGGTTACTAGATCTCTGCAATGCCTTTAGCTCAGAG 371
Query 577 CTCACACGTCTCAACCAGGGAGATCTCTTCCTCAAGTGTGTTCTGCACAATTTACAATCG 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 CTCACACGTCTCAACCAGGGAGATCTCTTCCTCAAGTGTGTTCTGCACAATTTACAATCG 431
Query 637 GATTCTGGGGAGAAGTATCTCCAGGCTCGATCTTCGCTTGATAGCTGGAGGCAACATGTT 696
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 432 GATTCCGGGGAGAAGTATCTCCAGGCTCGGTCTTCGCTTGATAGCTGGAGGCAACATGTT 491
Query 697 AATACAAACAACCCTAGAATTGAAAACTGCCGTGCGGTTCTAGACAGTCTTGTTAAATCT 756
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 492 AATGCAAACAACCCTAGAATTGAAAACTGCCGTGCGGTTCTAGACAGTCTTGTTAAGTCT 551
Query 757 CTGAGTCTGCCTAAAGTCAAGAACTCGCCTAAAGGAAAGGTTCTGATGCGAGCTTTTTAT 816
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 CTGAGCCTGCCTAAAGTCAAGAACTCGCCTAAAGGAAAGGTTCTGATGCGAGCTTTTTAT 611
Query 817 GGTGTGAAGGTTCAAACAGTTTATATCTGCAGTGTATTTACCGCAGCCTGGTCTGATTCC 876
|||||||| |||||||| || ||||| ||||||||||||||||| |||||||||||||||
Sbjct 612 GGTGTGAAAGTTCAAACGGTCTATATATGCAGTGTATTTACCGCGGCCTGGTCTGATTCC 671
Query 877 ACCAAGGATCTTTTCGATTTACCTGTCTCTGAAAAACCATTATGGGCAAAGGTCTTTACT 936
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 672 ACCAAGGATCTTTTCGATTTACCTGTCTCTGAAAAACCATTGTGGGCAAAGGTCTTTACT 731
Query 937 GATATGCAGAGTGTTGTAAATGCTGAGATCAGAGACATGTTGTCTTCCGGTAGAACCACG 996
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 732 GATATGCAGAGTGTTGTAAATGCTGAGATCAGAGCCATGTTGTCTTCCGGTAGAACCACG 791
Query 997 ATTCTCAAAGAGCTGGAGAGCGTTGATGCTAGTGTCGAGAAGCTATACCCGATGATCCAA 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 ATTCTCAAAGAGCTGGAGAGCGTTGATGCTAGTGTCGAGAAGCTATACCCGATGATCCAA 851
Query 1057 GATGGCGTTGATCCTGTCGAAGTTGAATTCTTCAAAGATAATGTTATGGAATTGGGGACA 1116
||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||| ||
Sbjct 852 GATGGCGTTGATCCTGTTGAAGTTGAATGCTTCAAAGATTATGTTATGGAATTGGGGGCA 911
Query 1117 CAAGCTGAGAAATTGTCTCAAGGGTTGGATCAGTTACTGGAGGAAGTTGATAGTTTCTTT 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 CAAGCTGAGAAATTGTCTCAAGGGTTGGATCAGTTACTGGAGGAAGTTGATAGTTTCTTT 971
Query 1177 AAACTGACTTTGAGAGGGCGCGATGTGTTGCTCTGTAATCTTAGGTCAAGTGACTCAATC 1236
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 AAACTGACTTTGAGCGGGCGCGATGTGTTGCTCTGTAATCTTAGGTCAAGTGACTCAATC 1031
Query 1237 TCTGGCAATGCAGTTGGAGAAGATGTAGACTAAAATAGTGAGGTAAACAAACA 1289
||||||||||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 1032 TCTGGCAATGCAGTTGGAGAAGATGTAGAATAAAACAGTAAGGTAAACAAACA 1084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54964223535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5