BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46090.1
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483755 jgi|Araly1|483755|fgenesh2_kg.4__2815__AT2G46090.1 2115 0.0
> Ahg483755 jgi|Araly1|483755|fgenesh2_kg.4__2815__AT2G46090.1
Length=1348
Score = 2115 bits (1145), Expect = 0.0
Identities = 1284/1350 (95%), Gaps = 14/1350 (1%)
Strand=Plus/Plus
Query 1 AAGTGTCTAATCGCGCGATGAACTTGATAACGGCGATGA------CCGGAGCTAAATTGC 54
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1 AAGTGTCTAATCGCGCGATGAACTTGATAACGGCGATGATGTCTCCCGGAGCCGAATTGC 60
Query 55 GGCCATACAATGCTACGATCCACTTGCTGCACTCCACTTTGCCCTTTCACGGCGAAACAA 114
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 GGCCATACAATGCTACGATCCACTTGCTGCATTCCACTTTGCCCTTTCACGGCGAAACAA 120
Query 115 CCTTCTTTCCTTAGGAAACAGCAACGTATTACCTCTGATCGCTTCACCTTTCGCGGTGGT 174
||||| |||| |||||||||||||||||| |||||||||| ||||||| |||||||||||
Sbjct 121 CCTTCGTTCCCTAGGAAACAGCAACGTATAACCTCTGATCACTTCACCCTTCGCGGTGGT 180
Query 175 GGTGGTGGCGATGCCGCCGCCGTCGTCTCCTCCTCCGGCCTCCGTGATCTCGTTTTCGTC 234
|||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GGTGGTGGCGGTGCCTCCGCCGTCGTCTCCTCCTCCGGCCTCCGTGAGCTCGTTTTCGTC 240
Query 235 GTAAACCCTCAAGGTGCTAATGGTAGAACAGCTAAAGAATGGAAGAAGTTGCTTCCTCAC 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 GTAAACCCTCAAGGTGCTAATGGTAGAACAGCTAAAGAATGGAAGAAGTTGCTTCCTTAC 300
Query 295 CTTCGATCTCGTCTTGGTAAAGACTGTAATGTAAGTGAATTATTAACATCGGGTCCTTCT 354
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 301 CTTCGATCTCGTCTTGGTAAAGACTGTAATGTTAGTGAATCATTAACATCGGGTCCTTCT 360
Query 355 CATGCCATTGACATTACAAGAGAGGCTATAAGGGATGGTGCAGATGCTGTCATTGCGGTT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CATGCCATTGACATTACAAGAGAGGCTATAAGGGATGGTGCAGATGCTGTCATTGCGGTT 420
Query 415 GGAGGTGATGGAACACTTCATGAGGTTGTTAATGGTTTCTTTTGGGAGGGGAAACCTGTC 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGAGGTGATGGAACACTTCATGAGGTTGTTAATGGTTTCTTTTGGGAGGGGAAACCTGTC 480
Query 475 GGTTATCTCAGTGGGGAAGCTAGTCGAT-CGACTGCACTTGGTCTGATTCCCTTAGGTAC 533
||| |||||| | |||||||||| || |||||||||||||||||||||||||||| ||
Sbjct 481 GGTAATCTCAACAGCGAAGCTAGTC-ATTCGACTGCACTTGGTCTGATTCCCTTAGGCAC 539
Query 534 TGGCTCAGATTTTGCTAGAACATTTGGTTGGAACAATGATCCTTGTGAAGCAGTGGAGCG 593
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 TGGCTCAGATTTTGCTAGAACATTTGGTTGGAACAATGATCCTTGTGAAGCGGTGGAGCG 599
Query 594 CATTGCTAGAGGGATGCGATCACGGATTGATGTTGGTGTTATCGACAAGGAAGGAAAGGA 653
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 600 CATTGCTAAAGGGATGCGATCACGGGTTGATGTTGGTGTTATCGACAAGGAAGGAAAGGA 659
Query 654 TTTGCATTACTTCATCAATGTAGCTGATGTTCATTTGAGCGCAAAGGCAGGATTTTACGC 713
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 TTTGCATTACTTCATCAACGTAGCTGATGTTCATTTGAGCGCAAAGGCTGGATTTTACGC 719
Query 714 TTCAAAATACAAGAAATTTGGAAACTTGTGCTACGTAATTGGTGCCCTACAAGCGTTCAT 773
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 720 TTCAAAATACAAGAAATTTGGAAACTTGTGCTATGTAATTGGTGCCCTACAAGCTTTCAT 779
Query 774 GGGCCATCATAACCAAGATATGAGAATCAGAGTCAATGGAGGCGAATGGGAAATATATCC 833
||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 780 GGGGCATCATAACCGAGATATGAGAATCAGAGTCAATGGAGGTGAATGGGAAATATATCC 839
Query 834 CCAGGTCACTGCTCTCTGCGTTGGAAACGCAAAATACTTTGGTGGTGGAATGAAAATCAC 893
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 TCAGGTCACTGCTCTCTGCGTTGGAAACGCTAAATACTTTGGTGGTGGAATGAAAATCAC 899
Query 894 ACCCAACGCCATCCCTGGAAATGGAAATCTTGAGGTTGTGGTTCTTCAAAACTTCAAATG 953
|||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 900 ACCCAACGCCGTCCCAGGAAATGGAAATCTTGAGGTTGTGGTTCTTCAAGACTTCAAATG 959
Query 954 GTATGATTTCGTACTTAAACTTCATAAGCTGTACAACGGGACTCATCTTTCGGTTAACAA 1013
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 960 GTATGATTTCGTACTTAAACTTCATAAGCTATACAACGGGACGCATCTTTCGGTTAACAA 1019
Query 1014 TGTGACTTCAAGAAGTGTACAAAGCATCGAAGTTGAAGAGATTACAGACAGTGGAAGTAT 1073
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1020 TGTGACTTCAAGAAGTGTACAAAGTATCGAAGTTGAAGAGATTTCAGACAGTGGAAGTAT 1079
Query 1074 CTATGTGCAGTCAGATGGAGAACATCTTGGATTCCTACCTAGAAAGTTTCAGG-TGTTAC 1132
|||||| || ||||||||||||||||||||||| |||||||||||||||| || ||||||
Sbjct 1080 CTATGTTCAATCAGATGGAGAACATCTTGGATTTCTACCTAGAAAGTTTC-GGATGTTAC 1138
Query 1133 CCGGTGCCATAGACATAATCAGCTGATCAAAACCGCAGATTTCTTAGGATAAACTTGTCA 1192
|||||||||| ||||||||| | |||||||||||||||||||||||||||||||||| ||
Sbjct 1139 CCGGTGCCATCGACATAATCTGTTGATCAAAACCGCAGATTTCTTAGGATAAACTTGCCA 1198
Query 1193 AGTAAAGTGTAGAATACTTCAACTTTATATTCTTC--CTGTAATATGATTCATTGTTTAG 1250
|| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1199 AGAAAAGTGTAGAATACTTCAACTTTATATTCTTCTTCTGTAATTTGATTCATTGTTTAG 1258
Query 1251 CGAATCAGATTTAT--GCTCGTGTTACTTGTGTAACTCGTTACTATCACTATTTATTGTG 1308
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1259 CGAATCAGATTTATATGCTCGTGTTACTTGTGTTGCTCGTTACTATCACTATTTATTGTG 1318
Query 1309 TGGTCTCTGTTAACCACAAATAGATACTTT 1338
||||||||||||||||| || |||||||||
Sbjct 1319 TGGTCTCTGTTAACCACGAACAGATACTTT 1348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50665356693
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5