BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46100.1
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483757 jgi|Araly1|483757|fgenesh2_kg.4__2817__AT2G46100.1 1404 0.0
> Ahg483757 jgi|Araly1|483757|fgenesh2_kg.4__2817__AT2G46100.1
Length=892
Score = 1404 bits (760), Expect = 0.0
Identities = 855/899 (95%), Gaps = 13/899 (1%)
Strand=Plus/Plus
Query 27 CACAAAATTGAATCCTAAAAATGGTAGCTTCTCTTTCCTTTCATTCCATCGCCACCGTTA 86
|||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CACACAACTGAATCCAAAAAATGGTAGCTTCTCTTTCCTTTCATTCCATCGCCACCGTTA 60
Query 87 ATCCAATCTTCTCCGGCGATGGTGGTCGTTCAATCTTCCGGACT-AATCGCCGATTCGAA 145
|||||||||||||||||||||||||||||||||| |||||| || || ||||||||||||
Sbjct 61 ATCCAATCTTCTCCGGCGATGGTGGTCGTTCAATTTTCCGG-CTTAACCGCCGATTCGAA 119
Query 146 GCAACTGGAGTGAGTTGCCGAGGACAGAATCCTACTGACGAGCCACAGACAAGTAAAGGA 205
|||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||
Sbjct 120 GCAACTGGAGTGAGTTGCAGAGGACAGAATCCGACTAACGAGCCACAGACAAGTAAAGGA 179
Query 206 CCCGAGCCGGATAATGTTCTACTCAAAATCGCTTGGTACGGATCTGAGCTACTCGGAATA 265
|||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 CCCGAGCCTGAGAATGTTCTACTCAAAATCGCTTGGTACGGATCCGAGCTACTCGGAATC 239
Query 266 GCTGCTTCTGTTTTCCGATCTCCGGAGACTTCTCCGATTGTGACAGGCTTTGAGGTTCCT 325
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 GCTGCTTCCGTTTTCCGATCTCCAGAGACTTCTCCGATTGTGACAGGCTTTGAGGTTCCT 299
Query 326 GTTGATTGTTCTGGTCGAGCCGTTCGTGTAGCTGTCGTGGACTCGATTAAACAAGACTTT 385
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 300 GTTGATTGTTCTGGAGGAGCCGTTCGTGTAGCAGTCGTGGACTCGATTAAACAAGACTTT 359
Query 386 AAACGATCCTACTTCGTCACAGGTAATTTGACGCCGGAGGTTTATGAGGAGAAGTGTGAA 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAACGATCCTACTTCGTCACAGGTAATTTGACGCCGGAGGTTTATGAGGAGAAGTGTGAA 419
Query 446 TTCGCTGATCCGGCTGGATCCTTCAAGGGTCTTGCTCGTTTCAAAAGGAATTGCACTAAT 505
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTCGCTGATCCGGCTGGTTCCTTCAAGGGTCTTGCTCGTTTCAAAAGGAATTGCACTAAT 479
Query 506 TTCGGAAGCCTTATCGAGAAATCCAATATGAAGCTCATGAAATGGGAGAATTTTGAGGAT 565
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTCGGAAGCCTAATCGAGAAATCCAATATGAAGCTCATGAAATGGGAGAATTTTGAGGAT 539
Query 566 AAAGGAATTGGACATTGGAAATTTAGCTGTGTCATGTCGTTTCCATGGAAACCCATTCTT 625
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAAGGAGTTGGACATTGGAAATTTAGCTGTGTCATGTCGTTTCCATGGAAACCCATTCTT 599
Query 626 TCAGCAACTGGTTACACGGAGTA-TTATTTCGACACAGAATCCGGGAAAATTTGCAGGCA 684
|||||||||||||||||||| || || ||||||| |||||||||||||||||||||||||
Sbjct 600 TCAGCAACTGGTTACACGGAATACTT-TTTCGACCCAGAATCCGGGAAAATTTGCAGGCA 658
Query 685 CGTGGAGCATTGGAATGTCCCTAAGATTGCTCTGTTCAAACAACTTCTGAGACCCAGCCG 744
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 659 CGTGGAGCATTGGAATGTCCCTAAGATTGCTCTGTTCAAGCAACTTCTGAGACCCAGCCG 718
Query 745 TGGTTTAGTGGGG---ACACAAAACTAGCGCAGATGAAGAATGATGTCAATTTCAAATTA 801
||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||
Sbjct 719 TGGTTTAGTGGGGGGGACACAAAACTAGTG--GATGAAGAATGATGTCAATTTCAAATTA 776
Query 802 GAtttttttAACCGTAAATATATG-AAACTTGCTTCTGAAACTAATATGGGATACTCTGC 860
|||||||| ||||||||||||||| |||||| ||||||||||||||| | ||||| | |
Sbjct 777 GATTTTTTAAACCGTAAATATATGGAAACTTCCTTCTGAAACTAATA-G--ATACTGTAC 833
Query 861 TCTTAGAGATCTGTAATGAATCTATTCAAGATGACACATATAAACATACTATCACTGTC 919
| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 834 TATTAGAGATATGTAATGAATCTATTGAAGATGACACATATAAACATACTATCACTGTC 892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34158133632
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5