BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46110.1
Length=1400
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935577 jgi|Araly1|935577|scaffold_403565.1 1748 0.0
Ahg486638 jgi|Araly1|486638|fgenesh2_kg.5__2630__AT3G61530.1 885 0.0
Ahg483757 jgi|Araly1|483757|fgenesh2_kg.4__2817__AT2G46100.1 84.2 2e-15
> Ahg935577 jgi|Araly1|935577|scaffold_403565.1
Length=1084
Score = 1748 bits (946), Expect = 0.0
Identities = 1044/1090 (96%), Gaps = 12/1090 (1%)
Strand=Plus/Plus
Query 99 GGTTTCTTCATC-TTCACAACAATGGCGTCCTCACTCACTAGGAATTGCTCTCGCTTCTC 157
||||| |||||| | ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 2 GGTTTATTCATCGAT-ACAACAATGGCTTCCTCACTCACTAGGAACTGCTCTCGCTTCTC 60
Query 158 AAAAGCCATCTCTGTCCGTTTCATGAGTAACCTACCGGAAAACACCGTCTACGGAGGACC 217
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 CAAAGCCATCTCTGTCCGTTTCATGAGTAACCTACCGGAGAACACCGTCTACGGAGGACC 120
Query 218 AAAGCCACAAAACCCAAACCAAAGAGTGACGCTAACGCATCTCAGACAAAAACACCGGAG 277
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAAGCCGCAAAACCCAAACCAAAGAGTGACGCTAACGCATCTCAGACAAAAACACCGGAA 180
Query 278 AGGAGAACCGATCACCGTCGTAACTGCCTACGATTACCCATCCGCCGTTCATTTAGACAC 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGGAGAACCGATCACCGTCGTAACTGCCTACGATTACCCATCCGCCGTTCATTTAGACAC 240
Query 338 A---GCTGGTATCGATGTTTGTCTTGTCGGTGACTCAGCTTCCATGGTTGTTCATGGTCA 394
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 AGCTGCTGGTATCGATGTTTGTCTTGTTGGTGACTCAGCTTCCATGGTTGTTCATGGTCA 300
Query 395 CGACACAACACTTCCTATCTCCTTAGACGAGATGCTTGTTCATTGTCGTGCCGTTGCTCG 454
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 301 CGACACAACACTTCCTATCTCCTTAGACGAGATGCTTGTCCATTGTCGAGCCGTTGCTCG 360
Query 455 AGGCGCTAAACGACCTCTCCTAGTTGGTGACTTGCCATTTGGTACCTACGAGTCAAGCTC 514
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 AGGCGCTAAACGGCCTCTCCTAGTTGGTGACTTGCC-TTTGGTACCTACGAGTCAAGCTC 419
Query 515 TAGTCAGGCGGTTGATACTGCGGTTAGGGTTTTGAAGGAAGGAGGAATGGATGCGATTAA 574
| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 ---T-A-GCGGTTGATACTGTTGTTAGGGTTTTGAAGGAAGGAGGAATGGATGCGATTAA 474
Query 575 GCTCGAAGGAGGATCAGCTTCTAGGATCACTGCTGCAAAAGCTATAGTTGAAGCAGGAAT 634
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 475 GCTCGAAGGAGGATCCGCTTCTAGGATCACTGCTGCAAAAGCCATAGTTGAAGCAGGAAT 534
Query 635 TGCGGTTATTGGTCATGTGGGTCTAACCCCTCAGGCGATTAGCGTTCTTGGTGGTTTCAG 694
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 535 TGCGGTTATCGGTCATGTGGGTCTAACTCCTCAGGCGATCAGCGTTCTTGGTGGTTTCAG 594
Query 695 ACCCCAAGGCAGAAACATAGCTAGTGCTGTTAAAGTTGTTGAGACTGCAATGGCTTTACA 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 ACCCCAAGGCAGAAACATAGCTAGTGCTGTTAAAGTTGTTGAGACTGCAATGGCTTTACA 654
Query 755 AGAAGCTGGATGTTTTTCGGTTGTTTTGGAATGCGTTCCACCTCCTGTAGCTGCTGCTGC 814
|||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||
Sbjct 655 AGAAGCTGGATGTTTTTCTGTTGTTTTGGAATGCATTCCACCTCCTGTGGCTGCTGCTGC 714
Query 815 AACTTCTGCCCTCAAGATACCAACCATTGGCATTGGGGCTGGACCTTTCTGCAGTGGACA 874
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 715 AACCTCTGCCCTCAAGATACCAACCATTGGCATTGGGGCTGGACCATTCTGCAGTGGACA 774
Query 875 GGTGCTAGTTTACCATGATCTTCTTGGTATGATGCAACATCCACATCATGCCAAGGTTAC 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GGTGCTAGTTTACCATGATCTTCTTGGTATGATGCAACATCCACATCATGCCAAGGTTAC 834
Query 935 TCCAAAGTTTTGCAAGCAGTACGCTAATGTCGGAGAAGTGATTAACAAAGCCCTAATGGA 994
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 835 TCCAAAGTTTTGCAAGCAGTACGCTAATGTAGGAGAAGTGATTAACAAAGCCTTAATGGA 894
Query 995 ATACAAAGAAGAAGTCTCTAAAAAAGTGTTTCCAGGTCCTTCTCACAGTCCTTACAAGAT 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 ATACAAAGAAGAAGTCTCTAAAAAAGTGTTTCCAGGTCCTTCTCACAGTCCTTACAAGAT 954
Query 1055 CACAGCAAGTGAGCTCGATGGGTTCTTAACCGAGTTGCAGAAGCTTGGTTTTGACAAGGC 1114
||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 955 CACAGCAAGCGAGCTCGATGGGTTCTTAACCGAGTTGCAGAATCTTGGCTTTGACAAGGC 1014
Query 1115 TGCTTCTGCAGCAGCTTTAGCAGCTGAGAACATGGAGCCTTCAAAGTGACAATTGTAT-C 1173
| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1015 CGTTTCTGCAGCAGCTTCAGCAACTGAGAACATGGAGCCTTCAAAGTGACAATTGTATTC 1074
Query 1174 CAAAAGCTTG 1183
||||| ||||
Sbjct 1075 CAAAATCTTG 1084
> Ahg486638 jgi|Araly1|486638|fgenesh2_kg.5__2630__AT3G61530.1
Length=1221
Score = 885 bits (479), Expect = 0.0
Identities = 875/1067 (82%), Gaps = 24/1067 (2%)
Strand=Plus/Plus
Query 105 TTCATCTTC-ACAACAATGGCGT-CCTCACTCACT-AGGAATTGCTCTCGCTTC-TCAAA 160
|||||| | ||||||||||| | | || ||| | |||| ||||||||| | | || |
Sbjct 16 TTCATCAGCAACAACAATGGC-TGCTTCGCTC-GTCAGGAGTTGCTCTCG-TGCTTCGAG 72
Query 161 AGCCAT---CTCTGTCC-GTTTCATGAGTAACCTACCGGAAAACACCGTCTACGGAGGAC 216
||||| | | |||| |||| ||||| ||| ||||||| ||||| || ||||||||||
Sbjct 73 GGCCATCACCACCGTCCGGTTT-ATGAGCAACGTACCGGAGAACACGGTTTACGGAGGAC 131
Query 217 C-AAAGCCACAAAACCCAAACCAAAGAGTGACGCTAACGC-ATCTCAGACAAAAACACCG 274
| ||| | || ||||| || || |||||||| | |||| || | ||||| || || ||
Sbjct 132 CGAAA-TCGCAGAACCCGAATCAGAGAGTGACTTTGACGCAAT-TGAGACAGAAGCATCG 189
Query 275 GAGAGGAGAACCGATCACCGTCGTAACTGCCTACGATTACCCATCCGCCGTTCATTTAGA 334
|| ||| || ||||| || | || || ||||| ||||| || || |||||||| | ||
Sbjct 190 GAAAGGTGAGCCGATTACTATGGTCACCGCCTATGATTATCCGTCTGCCGTTCACATCGA 249
Query 335 CACAGCTGGTATCGATGTTTGTCTTGTCGGTGACTCAGCTTCCATGGTTGTTCATGGTC- 393
||||| || || ||||||||||| ||||| || |||||| | |||||||||||||| |
Sbjct 250 TACAGCCGGAATTGATGTTTGTCTCGTCGGAGATTCAGCTGCAATGGTTGTTCATGG-CT 308
Query 394 ACGACACAACACTTCCTATCTCCTTAGACGAGATGCTTGTTCATTGTCGTGCCGTTGCTC 453
| ||||| || ||||||||||||||||| |||||||||||||| ||||| ||||| ||||
Sbjct 309 ATGACACCACTCTTCCTATCTCCTTAGAGGAGATGCTTGTTCACTGTCGCGCCGTCGCTC 368
Query 454 GAGGCGCTAAACGACCTCTCCTAGTTGGTGACTTGCCATTTGGTACCTACGAGTCAAGCT 513
| || || ||| |||| || || ||||| || |||||||||||||| || || || |||
Sbjct 369 GTGGAGCCAAAAGACCACTTCTTGTTGGCGATTTGCCATTTGGTACTTATGAATCTAGCA 428
Query 514 CTAGTCAGGCGGTTGATACTGCGGTTAGGGTTTTGAAGGAAGGAGGAATGGATGCGATTA 573
| | |||||||||||||||||| || || || ||||| ||||||||||||||||| ||||
Sbjct 429 CCAATCAGGCGGTTGATACTGCAGTAAGAGTGTTGAAAGAAGGAGGAATGGATGCTATTA 488
Query 574 AGCTCGAAGGAGGATCAGCTTCTAGGATCACTGCTGCAAAAGCTATAGTTGAAGCAGGAA 633
| || |||||||||||| |||| |||||||||||||||||| | || || ||||||||||
Sbjct 489 AACTTGAAGGAGGATCACCTTCAAGGATCACTGCTGCAAAATCCATTGTGGAAGCAGGAA 548
Query 634 TTGCGGTTATTGGTCATG-TGGGTCTAACCCCTCAGGCGATTAGCGTTCTTGGTGGTTTC 692
|||| ||||| || |||| ||||| | || ||||| || || || ||||||||||||||
Sbjct 549 TTGCTGTTATGGGACATGTTGGGT-TGACTCCTCAAGCTATCAGTGTTCTTGGTGGTTTT 607
Query 693 AGACCCCAAGGCAGAAACATAGCTAGTGCTGTTAAAGTTGTTGAGACTGCAATGGCTTTA 752
|| || || |||| |||||| |||||||||||||| ||||| || |||||||||||||||
Sbjct 608 AGGCCACAGGGCAAAAACATTGCTAGTGCTGTTAAGGTTGTGGAAACTGCAATGGCTTTA 667
Query 753 CAAGAAGCTGGATGTTTTTCGGTTGTTTTGGAATGCGTTCCACCTCCTGTAGCTGCTGCT 812
||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||
Sbjct 668 CAAGAAGCTGGATGTTTTTCGGTTGTTTTAGAATGTGTTCCGCCTCCTGTGGCTGCTGCT 727
Query 813 GCAACTTCTGCCCT-CAAGATACCAACCATTGGCATTGGGGCTGGACCTTTCTGCAGTGG 871
||||| ||||| || || || |||||||||||||| || ||||| ||||||||||||||
Sbjct 728 GCAACCTCTGCTCTTCAT-ATTCCAACCATTGGCATAGGAGCTGGCCCTTTCTGCAGTGG 786
Query 872 ACAGGTGCTAGTTTACCATGATCTTCTTGGTATGATGCAACATCCACATCATGCCAAGGT 931
||||| |||| |||||||||||||| || |||||||| |||||||||||||| |||||
Sbjct 787 TCAGGTTTTAGTCTACCATGATCTTCTGGGAATGATGCAGCATCCACATCATGCTAAGGT 846
Query 932 TACTCCAAAGTTTTGCAAGCAGTACGCT-AATGTCGGAGAAGTGATTAACAAAGCCCTAA 990
|||||||||||||||||| ||||||||| || || ||||||||||| |||||||||||
Sbjct 847 TACTCCAAAGTTTTGCAAACAGTACGCTCAA-GTAGGAGAAGTGATCAACAAAGCCCTCT 905
Query 991 TGGAATACAAAGAAGAAGTCTCTAAAAAAGTGTTTCCAGGTCCTTCTCACAGTCCTTACA 1050
| || || || |||||||| |||||| | |||||||||||| |||||| || |||||||
Sbjct 906 TAGAGTATAAGGAAGAAGTATCTAAACACTTGTTTCCAGGTCTTTCTCATAGCCCTTACA 965
Query 1051 AGATCACAGCAAGTGAGCTCGATGGGTTCTTAACCGAGTTGCAGAAGCTTGGTTTTGACA 1110
||||| | |||| || || || || ||||||| |||||| ||||| || || || || |
Sbjct 966 AGATCGCCTCAAGCGACCTGGACGGATTCTTAAGCGAGTTACAGAATCTGGGATTAGATA 1025
Query 1111 AGGCTGCTTCTGCAGCAGCTTTAGCAGCTGAGAACATGGAGCCTTCA 1157
||||||||||||| ||||| | ||||||| || ||||||| ||||
Sbjct 1026 AGGCTGCTTCTGCTGCAGCAGCATCAGCTGAAAAGATGGAGCATTCA 1072
> Ahg483757 jgi|Araly1|483757|fgenesh2_kg.4__2817__AT2G46100.1
Length=892
Score = 84.2 bits (45), Expect = 2e-15
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Minus
Query 1353 GACAGTGATAGTATGTTTATATGTGTCATCTTGAATAGATTCATTACA 1400
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 892 GACAGTGATAGTATGTTTATATGTGTCATCTTCAATAGATTCATTACA 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52335996630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5