BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46130.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322266 jgi|Araly1|322266|fgenesh1_pm.C_scaffold_4002323 479 1e-134
> Ahg322266 jgi|Araly1|322266|fgenesh1_pm.C_scaffold_4002323
Length=342
Score = 479 bits (259), Expect = 1e-134
Identities = 284/296 (96%), Gaps = 2/296 (1%)
Strand=Plus/Plus
Query 57 ATAAGAAGATGAAAAATCCGCGATTTTCGTTTCGCACAAAGAGTGATGCAGATATT-CTC 115
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||
Sbjct 38 ATAAGAAGATGAAAAATCCGCGATTTGCGTTTCGCACAAAGAGTGATTCAGAT-TTACTT 96
Query 116 GATGATGGTTATCGATGGAGAAAGTACGGTCAGAAATCCGTCAAGAACAGCTTGTATCCC 175
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 97 GATGATGGTTATCGATGGAGAAAGTACGGTCAGAAGTCCGTCAAGAACAGCTTGTATCCC 156
Query 176 AGGAGCTATTATAGATGCACACAACACATGTGTAACGTGAAGAAGCAAGTTCAGAGGCTG 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 AGGAGCTATTATAGATGCACACAACACATGTGTAACGTGAAGAAGCAAGTTCAGAGGCTG 216
Query 236 TCGAAGGAGACGAGCATTGTGGAGACAACTTATGAAGGAATCCATAACCATCCTTGTGAG 295
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 TCGAAGGAGACGAACATGGTGGAGACAACTTATGAAGGAATCCATAACCATCCTTGTGAG 276
Query 296 GAGCTCATGCAAACCCTAACTCCTCTTCTTCATCAATTGCAGTTCCTCTCTAAGTT 351
|||| ||||||||||||||| ||||||||||||||| |||||||||| ||||||||
Sbjct 277 GAGCACATGCAAACCCTAACACCTCTTCTTCATCAAATGCAGTTCCTGTCTAAGTT 332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21977619264
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5