BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46140.1
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483759 jgi|Araly1|483759|fgenesh2_kg.4__2819__AT2G46140.1 946 0.0
> Ahg483759 jgi|Araly1|483759|fgenesh2_kg.4__2819__AT2G46140.1
Length=622
Score = 946 bits (512), Expect = 0.0
Identities = 551/570 (97%), Gaps = 2/570 (0%)
Strand=Plus/Plus
Query 20 agagagagagagacaaagagagaTCTGATCCTTTGAAGAAACAACACCaaaaaaaaaaaa 79
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1 AGAGAGAGAGAGATAAAGAGAGATCTGATCCTTTGAAGAAACAACA--AAAAAAAAAAGA 58
Query 80 aaaaGAATGGCATCAGCGGATGAAAAGGTGGTGGAAGAGAAGGCTTCGGTGATTTCAAGC 139
| |||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 59 AGAAGAATGGCATCGGCGGATGAAAAGGTGGTGGAAGAAAAGGCGTCCGTGATTTCAAGC 118
Query 140 TTGTTGGACAAAGCCAAAGGTTTCTTTGCGGAGAAGCTGGCGAATATTCCGACGCCGGAA 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TTGTTGGACAAAGCCAAAGGTTTCTTTGCGGAGAAGCTGGCGAATATTCCGACGCCGGAA 178
Query 200 GCAACCGTGGACGACGTTGATTTCAAAGGCGTGACACGTGATGGAGTAGATTATCACGCC 259
|| ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 179 GCCACCGTGGACGACGTTGATTTCAAAGGCGTTACACGTGAAGGAGTTGATTATCACGCC 238
Query 260 AAGGTCTCCGTCAAGAATCCTTACTCTCAATCCATCCCTATCTGCCAGATCTCTTACATC 319
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 239 AAGGTCTCCGTCAAGAATCCTTACTCTCAATCCATCCCTATTTGCCAGATCTCTTACATC 298
Query 320 CTCAAGAGTGCCACAAGGACGATCGCGTCAGGCACGATACCGGACCCGGGTTCGTTGGTT 379
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 299 CTCAAGAGTGCCACAAGGACGATCGCGTCAGGCACAATACCGGACCCGGGCTCGTTGGTT 358
Query 380 GGGAGCGGCACGACGGTTCTGGACGTACCGGTTAAGGTGGCTTATAGCATAGCGGTTAGT 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GGGAGCGGCACGACGGTTCTGGACGTACCGGTTAAGGTGGCTTATAGCATAGCGGTTAGT 418
Query 440 CTGATGAAGGATATGTGTACGGACTGGGACATTGACTATCAACTAGACATTGGGCTAACC 499
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 419 CTGATGAAGGACATGTGTACGGACTGGGACATTGACTATCAACTCGACATTGGGCTAACC 478
Query 500 TTCGACATTCCTGTTGTTGGTGATATCACCATTCCTGTCTCTACTCAGGGAGAGATCAAG 559
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 479 TTCGACATTCCTGTTGTTGGTGACATCACCATTCCTGTCTCTACTCAGGGAGAGATCAAG 538
Query 560 CTCCCTTCCCTTCGCGACTTCTTTTAATTA 589
||||||||||||||||||||||||||||||
Sbjct 539 CTCCCTTCCCTTCGCGACTTCTTTTAATTA 568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28439696082
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5