BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G46140.1 Length=771 Score E Sequences producing significant alignments: (Bits) Value Ahg483759 jgi|Araly1|483759|fgenesh2_kg.4__2819__AT2G46140.1 946 0.0 > Ahg483759 jgi|Araly1|483759|fgenesh2_kg.4__2819__AT2G46140.1 Length=622 Score = 946 bits (512), Expect = 0.0 Identities = 551/570 (97%), Gaps = 2/570 (0%) Strand=Plus/Plus Query 20 agagagagagagacaaagagagaTCTGATCCTTTGAAGAAACAACACCaaaaaaaaaaaa 79 ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| | Sbjct 1 AGAGAGAGAGAGATAAAGAGAGATCTGATCCTTTGAAGAAACAACA--AAAAAAAAAAGA 58 Query 80 aaaaGAATGGCATCAGCGGATGAAAAGGTGGTGGAAGAGAAGGCTTCGGTGATTTCAAGC 139 | |||||||||||| ||||||||||||||||||||||| ||||| || |||||||||||| Sbjct 59 AGAAGAATGGCATCGGCGGATGAAAAGGTGGTGGAAGAAAAGGCGTCCGTGATTTCAAGC 118 Query 140 TTGTTGGACAAAGCCAAAGGTTTCTTTGCGGAGAAGCTGGCGAATATTCCGACGCCGGAA 199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 TTGTTGGACAAAGCCAAAGGTTTCTTTGCGGAGAAGCTGGCGAATATTCCGACGCCGGAA 178 Query 200 GCAACCGTGGACGACGTTGATTTCAAAGGCGTGACACGTGATGGAGTAGATTATCACGCC 259 || ||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| Sbjct 179 GCCACCGTGGACGACGTTGATTTCAAAGGCGTTACACGTGAAGGAGTTGATTATCACGCC 238 Query 260 AAGGTCTCCGTCAAGAATCCTTACTCTCAATCCATCCCTATCTGCCAGATCTCTTACATC 319 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 239 AAGGTCTCCGTCAAGAATCCTTACTCTCAATCCATCCCTATTTGCCAGATCTCTTACATC 298 Query 320 CTCAAGAGTGCCACAAGGACGATCGCGTCAGGCACGATACCGGACCCGGGTTCGTTGGTT 379 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 299 CTCAAGAGTGCCACAAGGACGATCGCGTCAGGCACAATACCGGACCCGGGCTCGTTGGTT 358 Query 380 GGGAGCGGCACGACGGTTCTGGACGTACCGGTTAAGGTGGCTTATAGCATAGCGGTTAGT 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 GGGAGCGGCACGACGGTTCTGGACGTACCGGTTAAGGTGGCTTATAGCATAGCGGTTAGT 418 Query 440 CTGATGAAGGATATGTGTACGGACTGGGACATTGACTATCAACTAGACATTGGGCTAACC 499 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 419 CTGATGAAGGACATGTGTACGGACTGGGACATTGACTATCAACTCGACATTGGGCTAACC 478 Query 500 TTCGACATTCCTGTTGTTGGTGATATCACCATTCCTGTCTCTACTCAGGGAGAGATCAAG 559 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 479 TTCGACATTCCTGTTGTTGGTGACATCACCATTCCTGTCTCTACTCAGGGAGAGATCAAG 538 Query 560 CTCCCTTCCCTTCGCGACTTCTTTTAATTA 589 |||||||||||||||||||||||||||||| Sbjct 539 CTCCCTTCCCTTCGCGACTTCTTTTAATTA 568 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28439696082 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5