BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46150.1
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483760 jgi|Araly1|483760|fgenesh2_kg.4__2820__AT2G46150.1 1284 0.0
> Ahg483760 jgi|Araly1|483760|fgenesh2_kg.4__2820__AT2G46150.1
Length=961
Score = 1284 bits (695), Expect = 0.0
Identities = 883/968 (91%), Gaps = 36/968 (4%)
Strand=Plus/Plus
Query 11 aaaaaaC-CACCATGGCAGATTCTGAACATGTACGGCCGCTAGCTCCGGCGACCATACTT 69
||||||| ||||||| ||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 1 AAAAAACACACCATGACAGATTCCGAACATGTTCGTCCGCTAGCTCCGGCGACCATACTT 60
Query 70 CCGGTGAGCGATGAATCCGCCTCCAACATCAAGAACACACACCGTAGTAGAAACAGAATC 129
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| || ||
Sbjct 61 CCGGTGAGCGATGAATCCGCCTCCAACATCAAGAACACTCACCGTCGTAGAAACCGACTC 120
Query 130 AAATGCTCAATCTGCGTCACTGCAACATCTCTAATTCTAACCACGATCGTGTTGACTTTA 189
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAATGCTTAATCTGCGTCATTGCAACATCTCTAATTCTAACCACGATCGTGTTGACTTTA 180
Query 190 GTTTTCACGGTGTTCAGAGTCAAAGACCCGATCATAAAAATGAACGGCGTAATGGTCAAC 249
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTTTCACGTTGTTCAGAGTCAAAGACCCGATCATAAAAATGAACGGCGTAATGGTCAAC 240
Query 250 GGCCTAGATTCAGTCACGGGGACTAATCAAGTCCAACTGTTGGGGACAAACATCTCGATG 309
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 241 GGCCTAGATTCAGTCACGGGGATTAATCAGGTCCAACTGTTGGGGACAAACATCTCGATG 300
Query 310 ATCGTTGACGTATCGGTCAAGAATCCGAATACGGCGTCGTTTAAGTACTCCAACACCACG 369
||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 301 ATCGTTGACGTGTCGGTCAAGAATCCAAATATGGCGTCGTTTAAGTACTCCAACACCACG 360
Query 370 ACGGATATATACTACAAAGGAACGTTGGTGGGTGAAGCGCATGGGCTACCGGGGAAGGCG 429
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 ACGGATATATATTACAAAGGAACGTTGGTGGGTGAAGCACATGGGCTACCGGGGAAGGCG 420
Query 430 AGACCGCATCGGACTTCGAGGATGAACGTGACGGTTGATATTATGCTTGATCGGATATTA 489
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 421 AGACCGCATCGGACTTCGAGGATGAACTTGACGGTTGATATTATGATTGATCGGATATTA 480
Query 490 TCGGATCCGGGTTTGGGTCGAGAAATAAGTAGGTCGGGTCTTGTGAACGTGTGGAGTTAC 549
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 481 TCGGATCCGGGTTTGGGTCGAGAATTAAGTAGGTCGGGTCTTGTGAACATGTGGAGTTAC 540
Query 550 ACTAGGGTTGGTGGTAAGGTGAAGATTATGGGGATCGTGAAGAAGCACGTGACCGTTAAG 609
|||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||
Sbjct 541 ACTAGGGTTGGTGGTAAGGTAAAGATTTTGGGGATCGTGAAGAAGCATGTGACCGTTAAG 600
Query 610 ATGAATTGCACGATGGCTGTGAACATTACGGGACAGGCGATTCAAGATGTTGACTGCAAG 669
|||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 601 ATGAATTGCACGATGGCTGTGAACATTACGGGCCAGGCGATTCAAGATGTCGATTGCAAG 660
Query 670 aaaaaaaTCGATCTTTGAGGTATACGTCATACGATCGATCGATTAACGttttttttt-tt 728
||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| ||
Sbjct 661 AAAAAAATCGATCTTTGAGGTATACGTTATAGGATCGATCGATTAACTTTTTTTTTTCTT 720
Query 729 -ttA-G----------------A-CAACGTGAGATATGCGGATTAGAAACTTTCG-TGAC 768
||| | | |||||||||||||||||||||||| ||| | ||||
Sbjct 721 CTTATGTTTTGTTTTGTTTTTCAACAACGTGAGATATGCGGATTAGAATCTT-CAATGAC 779
Query 769 A--A--A--ACCAACAAAAAACACTATCTACTTGTTCTAGTTGTTTTTTAAAAAATTTGG 822
| | | ||||||| |||| ||||| ||| ||||||||||| ||||||||||| ||||
Sbjct 780 AGCAGTAGCACCAACACAAAATACTATTTACATGTTCTAGTTGCTTTTTAAAAAAATTGG 839
Query 823 GTCATTTGATTATCAGCACGATGCAATAGA-TGTGTTTCTTTATGTTTTCTTCTTCTTGC 881
||||||| ||| | ||||||||| | |||| | ||||||||||| |||||||||| || |
Sbjct 840 GTCATTTTATTTTTAGCACGATG-A-TAGACT-TGTTTCTTTATCTTTTCTTCTTTTTAC 896
Query 882 AAAATTTGTTTTTGTACAGTTGATCAGATTTTGAATGGAGTGAACATAAAGTCTACGTTA 941
|||| || ||| |||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 897 AAAAATT-TTT--GTACAGTTTATCGGATTTTGAATGGAGTGAACATAAAGTCTACGTTA 953
Query 942 AATAAATA 949
|||| |||
Sbjct 954 AATATATA 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36178648233
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5