BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46160.1
Length=803
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483761 jgi|Araly1|483761|fgenesh2_kg.4__2821__AT2G46160.1 1147 0.0
> Ahg483761 jgi|Araly1|483761|fgenesh2_kg.4__2821__AT2G46160.1
Length=799
Score = 1147 bits (621), Expect = 0.0
Identities = 742/800 (93%), Gaps = 9/800 (1%)
Strand=Plus/Plus
Query 9 CTTCTTCTTTACCATCAAATGTCAACACTCGCCTCCTCCGCCTCCGTCTTCCTAGTCCAC 68
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 CTTCTTCTTTACCATCAAATGTCAACAGTCGCCTCCTCCGCCTCCGTCTTCCTAGTCCAC 60
Query 69 CCTCCCCTTCCACCGTCGCCACCACAAGCAGGCAACCACTCTTACCTCACAACTCTAGGC 128
||||| |||||||||||||||| || | ||||||||||||||||| ||||||||||||
Sbjct 61 CCTCCTTTTCCACCGTCGCCACCGCACGGTGGCAACCACTCTTACCTTACAACTCTAGGC 120
Query 129 TTTGGCTACTCCATAGCCATAGCTCTCGGTTTTCTCGTCCTTCTCTCGACCGTCCTTTTA 188
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct 121 TTTGGCTACTCCATAGCCATAGCTCTCGGTTTCCTCGTCCTTCTCTCAACCGTCCTTCTA 180
Query 189 TCCTCATACATCTGTTGCCGTGACTCTCGCCGCCGCACAACCGCCGTGGAATCCACAGGC 248
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 TCCTCATACATATGTTGCCGTGACTCTCGCCGCCGCACAACCGCCGTGGAATCCGCAGGA 240
Query 249 GATCGTGGCGGAAGTGTAATCCTCCCCCGCATAATCTTTGTCGCCGAGGAAGACAATGAA 308
|| |||||||||||||||||||| || ||||||||||| |||||||| ||||||||||||
Sbjct 241 GACCGTGGCGGAAGTGTAATCCTTCCTCGCATAATCTTCGTCGCCGAAGAAGACAATGAA 300
Query 309 GATCTCGAAGCAGGTGATGTCGTGGTGGGACTTGATCAAGCCGTCATCAACTCATACCCT 368
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 301 GATCTCGAAGCAGGTGATGTCGTCGTGGGACTCGATCAAGCCGTCATCAACTCTTACCCT 360
Query 369 AAGTTCCACTTTTCCAAAGATACCTCCGCCGCGTCCTCAGATGGCTTTGGTGGCGGAGGA 428
||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||
Sbjct 361 AAGTTCCACTTTTCCAAAGATTCCTCCGCGGCTTCCTCTGATGGCTTTGGTGGCGGAGGA 420
Query 429 GACACAACGTGCTCGATCTGTTTATGTGAGTATAAAGAAGCGGAGATGCTGAGGATGATG 488
|| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 GATACGACGTGTTCGATCTGTTTGTGTGAGTATAAAGAAGCGGAGATGCTGAGGATGATG 480
Query 489 CCGGAGTGTAAACACTACTTCCATTTGTGTTGCCTTGATGCGTGGCTTAAACTCAACGGA 548
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 CCCGAGTGTAAACACTACTTCCATTTGTGTTGTCTTGATGCGTGGCTTAAACTCAACGGA 540
Query 549 TCTTGTCCCGTTTGTCGGAACTCGCCGCTTCCAACGCCGACTTCAACGCCTCTGTCAACG 608
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 541 TCTTGTCCCGTTTGTCGGAACTCGCCGCTTCCGACGCCGACATCAACGCCTCTGTCAACA 600
Query 609 CCTTTGTCAGAAGTTGTGCCTCTCTCCCAGTACGCGGCCGATCGGAGGAGAGCAAGAAGA 668
|||||||| ||||||||||| || || |||||||| ||||||||||||||||| ||||||
Sbjct 601 CCTTTGTCGGAAGTTGTGCCGCTTTCACAGTACGCCGCCGATCGGAGGAGAGCGAGAAGA 660
Query 669 TGATATTATTATTACATAGATCCATTCGCCTAA--A-TTAGGGTAATTCCTATTTATTAT 725
||||||||||||||||||||||||||||||||| | ||||||||||||||| | |||||
Sbjct 661 TGATATTATTATTACATAGATCCATTCGCCTAATTAATTAGGGTAATTCCTAGT-ATTAT 719
Query 726 TTTTGCTCCGTTTCATTACAACTTTACTGATTT-GTAATTa--aa--aaaaaTCCGTCAA 780
|||||||||||||||| ||||| || |||||| || ||| || |||||||||||||
Sbjct 720 TTTTGCTCCGTTTCATCACAACGTTCCTGATTCAGTGATTTGTAATTAAAAATCCGTCAA 779
Query 781 AAGTGGAGTTTGCCATTAAT 800
||||||||| ||||||||||
Sbjct 780 AAGTGGAGTATGCCATTAAT 799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29659629426
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5