BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46170.1
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935582 jgi|Araly1|935582|scaffold_403570.1 1315 0.0
Ahg486642 jgi|Araly1|486642|fgenesh2_kg.5__2634__AT3G61560.1 693 0.0
> Ahg935582 jgi|Araly1|935582|scaffold_403570.1
Length=809
Score = 1315 bits (712), Expect = 0.0
Identities = 768/796 (96%), Gaps = 0/796 (0%)
Strand=Plus/Plus
Query 77 GAAATTGAATTTCAAAAATCAATGGCGGAAGAAATTGAAAAATCTGTGCCGACAGAGGAA 136
|||||||||||| ||||||||||||||||||||||||| |||||||||||| | ||||||
Sbjct 1 GAAATTGAATTTGAAAAATCAATGGCGGAAGAAATTGAGAAATCTGTGCCGGCGGAGGAA 60
Query 137 TCTCTGATGGAGAAGATCTCCGAGAAGATTCACCATCACGATTCGTCGTCATCGTCTGAA 196
|||||||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||
Sbjct 61 TCTCTGATGGAGAAGATCGCTGAGAAGATTCACCACCACGATTCGTCTTCATCGTCTGAA 120
Query 197 TCCGAGTACGAGAAACCTGATTCTCCTTCGGCTGTGAAGGCGAAGATCTATCGTATGTTT 256
||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| |||||
Sbjct 121 TCCGAGTACGAGAAACCTGATTCGCCTTCCGCTGTAAAGGCGAAGATCTATCGTCTGTTT 180
Query 257 GGCAGAGAGAAGCCTGTTCACAAGGTTCTCGGTGGTGGAAAGCCTGCTGATGTGTTCTTG 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGCAGAGAGAAGCCTGTTCACAAGGTTCTCGGTGGTGGAAAGCCTGCTGATGTGTTCTTG 240
Query 317 TGGAGGGATAAAAAACTATCAGGTGCTGTTCTTGGTGTCGCGACTGCTATTTGGGTTCTG 376
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 241 TGGAGGGATAAAAAACTGTCAGCTGCTGTTCTTGGTGTCGCGACTGCTATTTGGGTTCTG 300
Query 377 TTCGAGCTGGTTGAGTATCATTTGTTGAGTCTTTTGTGTCACATTTCGATACTCGCTCTT 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCGAGCTGGTTGAGTATCATTTGTTGAGTCTTTTGTGTCACATTTCGATACTCGCTCTT 360
Query 437 GGAGGCCTCTTTTTGTGGTCCAATGCTCACACACTTATCAACAAGACTTCACCACAAATT 496
||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||
Sbjct 361 GGAGGCCTCTTTTTGTGGTCCAATGTTCACACATTTATCAACAAGTCTTCACCACAAATT 420
Query 497 CCAGAAATCCATGTTCCCGAGGAGGCTTTCCTTGTGGTTGCTTCTTCTCTGAGAAACGAA 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCAGAAATCCATGTTCCCGAGGAGGCTTTCCTTGTGGTTGCTTCTTCTCTGAGAAACGAA 480
Query 557 CTAAACCAAGCTTTTGTTATCCTACGAAGCATTGCTTTAGGAAGGGACCTaaaaaaaTTC 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTAAACCAAGCTTTTGTTATCCTACGAAGCATTGCTTTAGGAAGGGACCTAAAAAAATTC 540
Query 617 CTGATGGTTGTTGTCGGTCTATGGATCATCTCGGTGGTGGGCAATTGGTTCAATTTCCTG 676
|| ||| ||||||| |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 541 CTAATGATTGTTGTTGGTCTATGGATCATCTCGGTGGTGGGCAATTGGTGCAACTTCCTG 600
Query 677 ACTTTGGTGTACATTTGCTTCGTGATATTGCACACAGTCCCAATGTTGTATGAGAAACAC 736
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 601 ACTTTGGTGTACATCTGCTTCGTGATATTGCACACAGTGCCAATGTTGTATGAGAAACAC 660
Query 737 GAGGACAAGGTTGATCCATTGGCAGAGAAAGCAATGAAGGAGTTGCAGAAACAGTATGTG 796
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 GAGGACAAGGTTGATCCATTGGCAGAGAAAGCAATGAAGGAGTTGCAGAAACAGTACGTG 720
Query 797 GTTTTCGATGAAAAGGTTCTCTCTAAGATTCCCATTGCTTCTCTCAAGGCAAAGGCAAAA 856
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTTTTTGATGAAAAGGTTCTCTCTAAGATTCCCATTGCTTCTCTCAAGGCAAAGGCAAAG 780
Query 857 TTGGGTTAAAAAGAGA 872
|||||||||| |||||
Sbjct 781 TTGGGTTAAACAGAGA 796
> Ahg486642 jgi|Araly1|486642|fgenesh2_kg.5__2634__AT3G61560.1
Length=1013
Score = 693 bits (375), Expect = 0.0
Identities = 640/767 (83%), Gaps = 21/767 (3%)
Strand=Plus/Plus
Query 96 CAATGGCGGAAGAAATT-GAAAAATCTGTGCCGACA-GAGGAATCTCTGATGGAGAAGAT 153
|||||||||||| |||| || ||||||||||||| | || |||||||||||||| |||||
Sbjct 74 CAATGGCGGAAG-AATTGGAGAAATCTGTGCCGA-AGGAAGAATCTCTGATGGATAAGAT 131
Query 154 CTCCGAGAAGATTCACCATCACGATTCGTCGTCATCGTCTGAATCCGAGTACGAGAAACC 213
| | |||||||| ||| |||||||||| ||||| |||||||| |||||| ||||||||||
Sbjct 132 CGCTGAGAAGATCCACGATCACGATTCTTCGTCGTCGTCTGATTCCGAGCACGAGAAACC 191
Query 214 TGATTCTCCTTCGGCTGTGAAGGCGAAGATCTATC-GTATGTTTGGCAGAGAGAAGCCTG 272
|| ||||| || ||| ||||||| || || |||| || ||||||| ||||||||||| |
Sbjct 192 AGAGTCTCCATCAGCTTTGAAGGCCAAAATATATCGGT-TGTTTGGTAGAGAGAAGCCGG 250
Query 273 TTCACAAGGTTCTCGGTGGTGGA--AAG--CCTGCTGATGTGTTCTTGTGGAGGGATAAA 328
||||||||||||||||||||||| | | || |||||||||||||||||||||||||||
Sbjct 251 TTCACAAGGTTCTCGGTGGTGGATTACGTACC-GCTGATGTGTTCTTGTGGAGGGATAAA 309
Query 329 AAACTATCAGGTGCTGTTCTTGGTGTCGCGACTGCTATTTGGGTTCTGTTCGAGCTGGTT 388
||||| |||| | ||||||||||||| || ||||| || ||||||||||| || ||||||
Sbjct 310 AAACTCTCAGCTTCTGTTCTTGGTGTAGCAACTGCGATATGGGTTCTGTTTGAACTGGTT 369
Query 389 GAGTATCATTTGTTGAGTCTTTTGTGTCACATTTCGATACTCGCTCTTGGAGGCCTCTTT 448
||||||||||| ||||||||| |||||||||||| |||| | ||||| | || ||| |||
Sbjct 370 GAGTATCATTTCTTGAGTCTTGTGTGTCACATTTTGATATTTGCTCTCGCAGCCCTGTTT 429
Query 449 TTGTGGTCCAATGCTCACACACTT-ATCAACAAGACTTCACC-ACAAATTCCAGAAATCC 506
|| | |||||||||||| | ||| || |||||||| |||| | |||| || |||||||
Sbjct 430 TTATTGTCCAATGCTCATGC-CTTTATGAACAAGACGCCACCTA-AAATACCTGAAATCC 487
Query 507 ATGTTCCCGAGGAGGC-TTTCCTTGTGGTTGCTTCTTCTCTGAGAAACGAACTAAACCAA 565
|| || ||||| | ||||||| || ||| |||| | || |||||||| || ||||||
Sbjct 488 ATATTAAAGAGGAA-CATTTCCTTATGATTGTTTCTGCACTTAGAAACGAGCTGAACCAA 546
Query 566 GCTTTTGTTATCCTACGAAGCATTGCTTTAGGAAGGGACCTaaaaaaaTTCCTGATGGTT 625
|| |||||||||||| | |||||||| |||||||||||| | |||||||| ||||||||
Sbjct 547 GCCTTTGTTATCCTAAGGAGCATTGCCTTAGGAAGGGACTTGAAAAAATTTCTGATGGTG 606
Query 626 GTTGTCGGTCTATGGATCATCTCGGTGGTGGGCAATTGGTTCAATTTCCTGACTTTGGTG 685
||||| || || ||||| ||||| || ||||| || |||||||| ||| ||||| || |
Sbjct 607 GTTGTTGGGCTGTGGATAATCTCTGTCGTGGGTAACTGGTTCAACTTCTTGACTCTGCTA 666
Query 686 TACATTTGCTTCGTGATATTGCACACAGTCCCAATGTTGTATGAGAAACACGAGGACAAG 745
||||| || || ||| | ||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 667 TACATCTGTTTTGTGGTGTTGCATACAGTACCAATGTTGTATGAGAAACATGAGGACAAG 726
Query 746 GTTGATCCA-TTGGCAGAGAA-AGCAATGAAGGAGTTGCAGAAACAGTATGTGGTTTTCG 803
|| |||||| ||| ||||||| | | |||||||| || ||||||| || |||| ||||
Sbjct 727 GTAGATCCAGTTG-CAGAGAAGA-CGTTGAAGGAGCTGAAGAAACATTACATGGTGTTCG 784
Query 804 ATGAAAAGGTTCTCTCTAAGATTCCCATTGCTTCTCTCAAGGCAAAG 850
|||| |||||||| |||||| |||| |||||||| || |||||||||
Sbjct 785 ATGAGAAGGTTCTTTCTAAGCTTCCTATTGCTTCCCTTAAGGCAAAG 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42430806621
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5