BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46192.1
Length=827
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483765 jgi|Araly1|483765|fgenesh2_kg.4__2825__AT2G46192.1 760 0.0
> Ahg483765 jgi|Araly1|483765|fgenesh2_kg.4__2825__AT2G46192.1
Length=719
Score = 760 bits (411), Expect = 0.0
Identities = 522/572 (91%), Gaps = 22/572 (4%)
Strand=Plus/Minus
Query 9 TCTAGGGTTTATAGCTCATCTTCTTCCTCGCCGTTT-CGGCAACTTTACTTAGCTTTCAA 67
|||||||||||||||||||||||||||||||| ||| | || | ||||||||||||||||
Sbjct 719 TCTAGGGTTTATAGCTCATCTTCTTCCTCGCC-TTTACTGCGATTTTACTTAGCTTTCAA 661
Query 68 ATACGt-tt-ttttttATAAATATCTTTGATTATCGAGCGATGCGATGAAGAGTTAATAT 125
|| ||| || | |||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 660 ATTCGTCTTGTATTTT-T---TATCTTTGATTATCGAGTGATGCGATGAAGAGTTAATAT 605
Query 126 CGG-AAATA-AACAGATCGTGGGACAAATCTCGTCTCGCGAGTTGATGTCCGATAATATT 183
||| ||||| ||||||||||||| | ||||||||||| |||||||||||||||| ||||
Sbjct 604 CGGAAAATATAACAGATCGTGGGGCGAATCTCGTCTCACGAGTTGATGTCCGATTTTATT 545
Query 184 ATGGTTCGTATTCGCTGAGCATCGTATTCGTTGTAGCATGTTTAGAAATTAGGCAACGAA 243
|||||||||||||||||||||||| ||||||| | |||| ||||||||||| | ||||||
Sbjct 544 ATGGTTCGTATTCGCTGAGCATCGAATTCGTTATCGCATATTTAGAAATTACGTAACGAA 485
Query 244 GGACCTATGGGTGAAACGCTTTAATCAATGCGTATTCAAGCCAAGTTTACCTTCGGAAAT 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GGACCTATGGGTGAAACGCTTTAATCAATGCGTATTCAAGCCAAGTTTACCTTCGGAAAT 425
Query 304 TCATAATCGGAGATTGGTGGATTTATCCGAGATCTGTG-TTTTCAATTCCGGATTTCGGT 362
||| ||||||||||||||||||||||||||||||| || |||| |||||| |||||||||
Sbjct 424 TCA-AATCGGAGATTGGTGGATTTATCCGAGATCTATGGTTTT-AATTCCAGATTTCGGT 367
Query 363 TTTTCATCCCTTATGGATTTGGTTTTCGATTAAATTCTTGT-GATATGAGAATGTGA-TT 420
|||||||||||||||||||| ||||||||||| ||||| || | ||| | ||||||| ||
Sbjct 366 TTTTCATCCCTTATGGATTTAGTTTTCGATTAGATTCT-GTTGGTATTAAAATGTGAATT 308
Query 421 AGAAGCAAAAGCGAAGGACCCAGCAGGGAAGCGAGTAAACTCATGAAATGAGGCTTCTCT 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 AGAAG-AAAAGCGAAGGACCCAGCAGGGAAGCGAGTAAACTCATGAAATGAGGCTTCTCT 249
Query 481 AACAATTTATTTAACCTTCGTAGATTGAATCTCCAAGAGCTCTTTGATGATCTA-CGTT- 538
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||| | ||
Sbjct 248 AACAATTTTTTTAACCTTCGTAGATTGAGTCTCCAAGAGCTCTTTGATGATCTATC-TTC 190
Query 539 TTCGTGGGTTCTCTTGTGTTTTTTGGTGTATA 570
|| |||| || |||||||||||| ||||||||
Sbjct 189 TT-GTGGATTGTCTTGTGTTTTT-GGTGTATA 160
Score = 230 bits (124), Expect = 2e-59
Identities = 142/151 (94%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 608 AAATGCAGAGATTGTGTGTATCGGCTTAGTGCGATGTAATGCGCTTTGTACGAAAGATTT 667
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 159 AAAAGCAGAGATTGTGTGTATCGGCTTAGTGCGATCTAATGCGCTTTGTACGAAAGTTTT 100
Query 668 CTCTGCGACATTAATTTGGGGCAGATGGGCAGTTGTGATTCAATGTCAATTGAATAGCTC 727
|||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 99 TTCTGCGACATCAATTTGGGGCAGATGGGCAGTTGTGATTCATTGTTAATTGAATAGCTC 40
Query 728 AACAATCATCTTCCCCACAATTCGTTTGATT 758
||||||||||||||||||||||| ||| |||
Sbjct 39 AACAATCATCTTCCCCACAATTCTTTTTATT 9
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30574579434
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5