BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G46192.1 Length=827 Score E Sequences producing significant alignments: (Bits) Value Ahg483765 jgi|Araly1|483765|fgenesh2_kg.4__2825__AT2G46192.1 760 0.0 > Ahg483765 jgi|Araly1|483765|fgenesh2_kg.4__2825__AT2G46192.1 Length=719 Score = 760 bits (411), Expect = 0.0 Identities = 522/572 (91%), Gaps = 22/572 (4%) Strand=Plus/Minus Query 9 TCTAGGGTTTATAGCTCATCTTCTTCCTCGCCGTTT-CGGCAACTTTACTTAGCTTTCAA 67 |||||||||||||||||||||||||||||||| ||| | || | |||||||||||||||| Sbjct 719 TCTAGGGTTTATAGCTCATCTTCTTCCTCGCC-TTTACTGCGATTTTACTTAGCTTTCAA 661 Query 68 ATACGt-tt-ttttttATAAATATCTTTGATTATCGAGCGATGCGATGAAGAGTTAATAT 125 || ||| || | |||| | ||||||||||||||||| ||||||||||||||||||||| Sbjct 660 ATTCGTCTTGTATTTT-T---TATCTTTGATTATCGAGTGATGCGATGAAGAGTTAATAT 605 Query 126 CGG-AAATA-AACAGATCGTGGGACAAATCTCGTCTCGCGAGTTGATGTCCGATAATATT 183 ||| ||||| ||||||||||||| | ||||||||||| |||||||||||||||| |||| Sbjct 604 CGGAAAATATAACAGATCGTGGGGCGAATCTCGTCTCACGAGTTGATGTCCGATTTTATT 545 Query 184 ATGGTTCGTATTCGCTGAGCATCGTATTCGTTGTAGCATGTTTAGAAATTAGGCAACGAA 243 |||||||||||||||||||||||| ||||||| | |||| ||||||||||| | |||||| Sbjct 544 ATGGTTCGTATTCGCTGAGCATCGAATTCGTTATCGCATATTTAGAAATTACGTAACGAA 485 Query 244 GGACCTATGGGTGAAACGCTTTAATCAATGCGTATTCAAGCCAAGTTTACCTTCGGAAAT 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 484 GGACCTATGGGTGAAACGCTTTAATCAATGCGTATTCAAGCCAAGTTTACCTTCGGAAAT 425 Query 304 TCATAATCGGAGATTGGTGGATTTATCCGAGATCTGTG-TTTTCAATTCCGGATTTCGGT 362 ||| ||||||||||||||||||||||||||||||| || |||| |||||| ||||||||| Sbjct 424 TCA-AATCGGAGATTGGTGGATTTATCCGAGATCTATGGTTTT-AATTCCAGATTTCGGT 367 Query 363 TTTTCATCCCTTATGGATTTGGTTTTCGATTAAATTCTTGT-GATATGAGAATGTGA-TT 420 |||||||||||||||||||| ||||||||||| ||||| || | ||| | ||||||| || Sbjct 366 TTTTCATCCCTTATGGATTTAGTTTTCGATTAGATTCT-GTTGGTATTAAAATGTGAATT 308 Query 421 AGAAGCAAAAGCGAAGGACCCAGCAGGGAAGCGAGTAAACTCATGAAATGAGGCTTCTCT 480 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 307 AGAAG-AAAAGCGAAGGACCCAGCAGGGAAGCGAGTAAACTCATGAAATGAGGCTTCTCT 249 Query 481 AACAATTTATTTAACCTTCGTAGATTGAATCTCCAAGAGCTCTTTGATGATCTA-CGTT- 538 |||||||| ||||||||||||||||||| ||||||||||||||||||||||||| | || Sbjct 248 AACAATTTTTTTAACCTTCGTAGATTGAGTCTCCAAGAGCTCTTTGATGATCTATC-TTC 190 Query 539 TTCGTGGGTTCTCTTGTGTTTTTTGGTGTATA 570 || |||| || |||||||||||| |||||||| Sbjct 189 TT-GTGGATTGTCTTGTGTTTTT-GGTGTATA 160 Score = 230 bits (124), Expect = 2e-59 Identities = 142/151 (94%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 608 AAATGCAGAGATTGTGTGTATCGGCTTAGTGCGATGTAATGCGCTTTGTACGAAAGATTT 667 ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 159 AAAAGCAGAGATTGTGTGTATCGGCTTAGTGCGATCTAATGCGCTTTGTACGAAAGTTTT 100 Query 668 CTCTGCGACATTAATTTGGGGCAGATGGGCAGTTGTGATTCAATGTCAATTGAATAGCTC 727 |||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 99 TTCTGCGACATCAATTTGGGGCAGATGGGCAGTTGTGATTCATTGTTAATTGAATAGCTC 40 Query 728 AACAATCATCTTCCCCACAATTCGTTTGATT 758 ||||||||||||||||||||||| ||| ||| Sbjct 39 AACAATCATCTTCCCCACAATTCTTTTTATT 9 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30574579434 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5