BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46200.1
Length=1460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483767 jgi|Araly1|483767|fgenesh2_kg.4__2827__AT2G46200.1 1923 0.0
> Ahg483767 jgi|Araly1|483767|fgenesh2_kg.4__2827__AT2G46200.1
Length=1366
Score = 1923 bits (1041), Expect = 0.0
Identities = 1270/1377 (92%), Gaps = 29/1377 (2%)
Strand=Plus/Plus
Query 1 GCTTTTGCCGGCGTCGGATCTCGGCAAAGTCTCCTCCGTAGAAATTATCTATCTGTTG-T 59
||||||||||||||||||||||| | | |||||||||| ||||||||||| || |||| |
Sbjct 1 GCTTTTGCCGGCGTCGGATCTCGCCGATGTCTCCTCCGCAGAAATTATCT-TC-GTTGCT 58
Query 60 GGAAC-TGAAATCGCTGGA-TTTTGGGGTTTTCTGGTAAGAGGGTCTCCAG-GATGAATC 116
|| | | | | |||| ||| ||||||||||||||||| ||||| | ||||||||
Sbjct 59 CTCACATTAGGTTG-TGGAGCTTTAGGGTTTTCTGGTAAGAGACTCTCC-GAGATGAATC 116
Query 117 CGGCGAATTTTCAGCCTCCAAATCCTCCGTTCCACTGGGCTCCGATGTTACCTCCAGACC 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 117 CGGCGAATTTTCAGCCTCCAAATCCTCCGTTCCACTGGGCTCCGATGTTACCTCCCGACC 176
Query 177 CGCCTCGTTGTGGTATGTTTTGGAATACAAAGAACATAACCGATCAGCTTAAACAACTTC 236
| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
Sbjct 177 CTCCTCGTTGTGGTATGTTTTGGACTCCAAAGAACATAACCGATCAGCTTAAACAACTCC 236
Query 237 AAGATACGCTTAACCTGGCTAAATCAATGGAGAAAGAACTGGAAGCATTGAAGATGATCA 296
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 237 AAGATACGCTTAACCTGGCTAAATCAATGGAGAAGGAACTGGAAGCATTGAAGATGATCA 296
Query 297 AAGACGCCAAAGGTTCTGTGGAAAATGCAGTACAAGATTCGGGAGTAGA--G--T---AT 349
|| | || |||||||| |||||| || || ||||| ||| |||||||| | | ||
Sbjct 297 AATATGCTAAAGGTTCAGTGGAAGTTGTAGAACAAGGTTCAGGAGTAGAGTGTTTGAGAT 356
Query 350 -T-TAGAGGCTA-GAAAGATGGATTTGGGACAGCAGGAAATGCTTTCAGTGGATGCTGCT 406
| |||| |||| | ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 357 ATCTAGAAGCTATG-AAGATGGATTTGGGACAGCAGGAGATGCTTTCAGTGGAAGCTGCT 415
Query 407 AACTCCTTGATGTCTACCTTGAGAGCACAGCTTGAGCCTTTTAGGTTCGTTGTTGATGAG 466
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 416 AACTCCTTGATGTCTACCTTGAGATCACAGCTTGAGCCTTTTAGGTTTGTTGTTGATGAG 475
Query 467 AATAGTCCATGGGAAGAGAAATCTGCAGCAGTAAGATTGACTTGCAAAATGAAGAAATC- 525
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 AATAGTCCATGGGAAGAGAAATCTGCAGCAGTAAGATTGACTTGCAAAATGAAGAAATCG 535
Query 526 AATAAGGAACAAACTGTGGAAGAAACGAAAGAGACGGTGTGCTGCAGAGATGCGTGCTAA 585
|| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 536 AA-AAGGAACAAACTGTGGAAGAAGCGAAAGAGACGGTGTGTTGCAGAGATGCGTGCTAA 594
Query 586 GGAGCCTGAAAGATTTGAACAAGCTGATCGAGAGGCAGATGAATGGAGGGAAAAGGAAAT 645
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 595 GGAGCCTGAGAGATTTGAACAAGCTGATCGAGAGGCCGATGAATGGAGGGAAAAGGAAAT 654
Query 646 GGCCAAGGACATGGCAAATAGAAAGGTTGATGAGATGAAGGCAATTGAGAAGATCAAGGC 705
||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 655 GGCCAAGGACATGGCGAATAGAAAGGTCGACGAGATGAAGGCTATTGAGAAGATCAAGGC 714
Query 706 AAAACGTGAGCGAAAGAGACTAGAACCCGAGCTTGAACTAGCTCTGATTGTTGAGGAAAT 765
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 AAAACGTGAGCGAAGGAGACTAGAACCCGAGCTTGAACTAGCTCTGATTGTTGAGGAAAT 774
Query 766 GCAAGAGTTACGTTCCCTAAGAATTGAAAAACTAAAGAAGCAAGGACATTTCCTTCCCGA 825
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 775 GCAAGAGTTACGTTCCCTAAGAATCGAAAAACTAAAGAAGCAAGGACATTTCCTTCCTGA 834
Query 826 AGAAGATGACAAGTTTTTCGAGAGTGTTCGTGCTGCAGTGGAGCAAGAGGAAAACCAAGC 885
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 835 AGAAGATGATAAGTTTTTCGAAAGTGTTCGTGCTGCGGTGGAGCAAGAGGAAAACCAAGC 894
Query 886 TCAGTCCCTAATCAACACAGAGACCGAAGAGCATGTCATTGCCTCTGAGGAGAACACTAC 945
|||||||||||||||| |||||||||||||| |||||| ||||||||||||| |||||||
Sbjct 895 TCAGTCCCTAATCAACTCAGAGACCGAAGAGAATGTCAATGCCTCTGAGGAGGACACTAC 954
Query 946 TCTCACTACCAGTAACAAAACCAACAACGACACAGATAAAGATAGCAATACTAATGCAGC 1005
||||| | ||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 955 TCTCAATGCCAGTAACAAAACCAACAAAGACACAGATAAAGATAGCAATACTATTGCAGC 1014
Query 1006 TTCTTGTGAAAGGACTATGAAAGCTCCTGACAATGGTTGCGACAATATATCGAATTTACC 1065
||||||||||| ||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1015 TTCTTGTGAAAAGACGATGAAAGCTCCTGAAAATGGGTGCGACAATATATCGAATTTACC 1074
Query 1066 AGTCGAGGTCTATCACTACTACTACGGAAGTAATATCGACATGGGTAGACTTATTGAGAT 1125
||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||
Sbjct 1075 AGTCGAGTTCTATCACTACTACTACGGAAGCAATTTCGACATGGGTAAACTTATTGAGAT 1134
Query 1126 CAGAAGAGAATGGGATGCATATCTGAGTGCCGGAGGAAGCCGGATTCCTGGACACTGGGT 1185
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1135 CAGAAGAGAATGGGATGCATATCTGAGTCCCGGAGGAAGCCGGATTCCTGGACACTGGGT 1194
Query 1186 CCAGCCGTCGCCACCAGCTAATGAGATTTGGGCTTCTTGTCTTGTTAATACTCCCAAAAG 1245
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1195 CCAGCCGTCGCCACCAGCTAATGAGATTTGGGCTTCTTGTCTTGTTGATACTCCCAAGAG 1254
Query 1246 AGATCTTAGTTAGTCGCTGTTAGGA-TTCTAGGATACTGGTTTCATGCAA-CACCCTTTA 1303
|||||||||||||| |||||| ||| || |||||||| ||||||| || | |||| |
Sbjct 1255 AGATCTTAGTTAGTTGCTGTTGGGAATT-TAGGATACAGGTTTCA-GCCAGCACC----A 1308
Query 1304 CTCAAGATTATGCGATTTGGTCATTTGCCTCTGTTTTGAAACAGAAACAGATCACAA 1360
|| ||||| ||| |||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1309 CTGAAGATCATGTGATTTGGTCATTTGTCTCTGTTTTGAAACAGAAACAGTTCACAA 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54621411330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5