BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G46200.1 Length=1460 Score E Sequences producing significant alignments: (Bits) Value Ahg483767 jgi|Araly1|483767|fgenesh2_kg.4__2827__AT2G46200.1 1923 0.0 > Ahg483767 jgi|Araly1|483767|fgenesh2_kg.4__2827__AT2G46200.1 Length=1366 Score = 1923 bits (1041), Expect = 0.0 Identities = 1270/1377 (92%), Gaps = 29/1377 (2%) Strand=Plus/Plus Query 1 GCTTTTGCCGGCGTCGGATCTCGGCAAAGTCTCCTCCGTAGAAATTATCTATCTGTTG-T 59 ||||||||||||||||||||||| | | |||||||||| ||||||||||| || |||| | Sbjct 1 GCTTTTGCCGGCGTCGGATCTCGCCGATGTCTCCTCCGCAGAAATTATCT-TC-GTTGCT 58 Query 60 GGAAC-TGAAATCGCTGGA-TTTTGGGGTTTTCTGGTAAGAGGGTCTCCAG-GATGAATC 116 || | | | | |||| ||| ||||||||||||||||| ||||| | |||||||| Sbjct 59 CTCACATTAGGTTG-TGGAGCTTTAGGGTTTTCTGGTAAGAGACTCTCC-GAGATGAATC 116 Query 117 CGGCGAATTTTCAGCCTCCAAATCCTCCGTTCCACTGGGCTCCGATGTTACCTCCAGACC 176 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 117 CGGCGAATTTTCAGCCTCCAAATCCTCCGTTCCACTGGGCTCCGATGTTACCTCCCGACC 176 Query 177 CGCCTCGTTGTGGTATGTTTTGGAATACAAAGAACATAACCGATCAGCTTAAACAACTTC 236 | |||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 177 CTCCTCGTTGTGGTATGTTTTGGACTCCAAAGAACATAACCGATCAGCTTAAACAACTCC 236 Query 237 AAGATACGCTTAACCTGGCTAAATCAATGGAGAAAGAACTGGAAGCATTGAAGATGATCA 296 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 237 AAGATACGCTTAACCTGGCTAAATCAATGGAGAAGGAACTGGAAGCATTGAAGATGATCA 296 Query 297 AAGACGCCAAAGGTTCTGTGGAAAATGCAGTACAAGATTCGGGAGTAGA--G--T---AT 349 || | || |||||||| |||||| || || ||||| ||| |||||||| | | || Sbjct 297 AATATGCTAAAGGTTCAGTGGAAGTTGTAGAACAAGGTTCAGGAGTAGAGTGTTTGAGAT 356 Query 350 -T-TAGAGGCTA-GAAAGATGGATTTGGGACAGCAGGAAATGCTTTCAGTGGATGCTGCT 406 | |||| |||| | ||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 357 ATCTAGAAGCTATG-AAGATGGATTTGGGACAGCAGGAGATGCTTTCAGTGGAAGCTGCT 415 Query 407 AACTCCTTGATGTCTACCTTGAGAGCACAGCTTGAGCCTTTTAGGTTCGTTGTTGATGAG 466 |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 416 AACTCCTTGATGTCTACCTTGAGATCACAGCTTGAGCCTTTTAGGTTTGTTGTTGATGAG 475 Query 467 AATAGTCCATGGGAAGAGAAATCTGCAGCAGTAAGATTGACTTGCAAAATGAAGAAATC- 525 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 476 AATAGTCCATGGGAAGAGAAATCTGCAGCAGTAAGATTGACTTGCAAAATGAAGAAATCG 535 Query 526 AATAAGGAACAAACTGTGGAAGAAACGAAAGAGACGGTGTGCTGCAGAGATGCGTGCTAA 585 || ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 536 AA-AAGGAACAAACTGTGGAAGAAGCGAAAGAGACGGTGTGTTGCAGAGATGCGTGCTAA 594 Query 586 GGAGCCTGAAAGATTTGAACAAGCTGATCGAGAGGCAGATGAATGGAGGGAAAAGGAAAT 645 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 595 GGAGCCTGAGAGATTTGAACAAGCTGATCGAGAGGCCGATGAATGGAGGGAAAAGGAAAT 654 Query 646 GGCCAAGGACATGGCAAATAGAAAGGTTGATGAGATGAAGGCAATTGAGAAGATCAAGGC 705 ||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||| Sbjct 655 GGCCAAGGACATGGCGAATAGAAAGGTCGACGAGATGAAGGCTATTGAGAAGATCAAGGC 714 Query 706 AAAACGTGAGCGAAAGAGACTAGAACCCGAGCTTGAACTAGCTCTGATTGTTGAGGAAAT 765 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 715 AAAACGTGAGCGAAGGAGACTAGAACCCGAGCTTGAACTAGCTCTGATTGTTGAGGAAAT 774 Query 766 GCAAGAGTTACGTTCCCTAAGAATTGAAAAACTAAAGAAGCAAGGACATTTCCTTCCCGA 825 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 775 GCAAGAGTTACGTTCCCTAAGAATCGAAAAACTAAAGAAGCAAGGACATTTCCTTCCTGA 834 Query 826 AGAAGATGACAAGTTTTTCGAGAGTGTTCGTGCTGCAGTGGAGCAAGAGGAAAACCAAGC 885 ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 835 AGAAGATGATAAGTTTTTCGAAAGTGTTCGTGCTGCGGTGGAGCAAGAGGAAAACCAAGC 894 Query 886 TCAGTCCCTAATCAACACAGAGACCGAAGAGCATGTCATTGCCTCTGAGGAGAACACTAC 945 |||||||||||||||| |||||||||||||| |||||| ||||||||||||| ||||||| Sbjct 895 TCAGTCCCTAATCAACTCAGAGACCGAAGAGAATGTCAATGCCTCTGAGGAGGACACTAC 954 Query 946 TCTCACTACCAGTAACAAAACCAACAACGACACAGATAAAGATAGCAATACTAATGCAGC 1005 ||||| | ||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 955 TCTCAATGCCAGTAACAAAACCAACAAAGACACAGATAAAGATAGCAATACTATTGCAGC 1014 Query 1006 TTCTTGTGAAAGGACTATGAAAGCTCCTGACAATGGTTGCGACAATATATCGAATTTACC 1065 ||||||||||| ||| |||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1015 TTCTTGTGAAAAGACGATGAAAGCTCCTGAAAATGGGTGCGACAATATATCGAATTTACC 1074 Query 1066 AGTCGAGGTCTATCACTACTACTACGGAAGTAATATCGACATGGGTAGACTTATTGAGAT 1125 ||||||| |||||||||||||||||||||| ||| |||||||||||| |||||||||||| Sbjct 1075 AGTCGAGTTCTATCACTACTACTACGGAAGCAATTTCGACATGGGTAAACTTATTGAGAT 1134 Query 1126 CAGAAGAGAATGGGATGCATATCTGAGTGCCGGAGGAAGCCGGATTCCTGGACACTGGGT 1185 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1135 CAGAAGAGAATGGGATGCATATCTGAGTCCCGGAGGAAGCCGGATTCCTGGACACTGGGT 1194 Query 1186 CCAGCCGTCGCCACCAGCTAATGAGATTTGGGCTTCTTGTCTTGTTAATACTCCCAAAAG 1245 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 1195 CCAGCCGTCGCCACCAGCTAATGAGATTTGGGCTTCTTGTCTTGTTGATACTCCCAAGAG 1254 Query 1246 AGATCTTAGTTAGTCGCTGTTAGGA-TTCTAGGATACTGGTTTCATGCAA-CACCCTTTA 1303 |||||||||||||| |||||| ||| || |||||||| ||||||| || | |||| | Sbjct 1255 AGATCTTAGTTAGTTGCTGTTGGGAATT-TAGGATACAGGTTTCA-GCCAGCACC----A 1308 Query 1304 CTCAAGATTATGCGATTTGGTCATTTGCCTCTGTTTTGAAACAGAAACAGATCACAA 1360 || ||||| ||| |||||||||||||| |||||||||||||||||||||| |||||| Sbjct 1309 CTGAAGATCATGTGATTTGGTCATTTGTCTCTGTTTTGAAACAGAAACAGTTCACAA 1365 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54621411330 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5