BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46210.1
Length=1658
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483768 jgi|Araly1|483768|fgenesh2_kg.4__2828__AT2G46210.1 2335 0.0
Ahg939212 jgi|Araly1|939212|scaffold_503403.1 992 0.0
> Ahg483768 jgi|Araly1|483768|fgenesh2_kg.4__2828__AT2G46210.1
Length=1595
Score = 2335 bits (1264), Expect = 0.0
Identities = 1387/1447 (96%), Gaps = 5/1447 (0%)
Strand=Plus/Plus
Query 179 TCTCTTTCTCTGGTTCATCAATGGCGGATCAAACGAAGAAGAGATACGTTACAAGCGAGG 238
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 TCTCTTTCTCTTGTTCAACAATGGCGGATCAAACGAAGAAGAGATACGTTACAAGCGAGG 193
Query 239 ATTTGAAAAAACACAACAAACCTGGAGATTTATGGATTTCGATTCAAGGTAAAGTTTACG 298
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 194 ATTTGAAAAAACACAACAAACCTGGAGATTTATGGATATCGATTCAAGGTAAAGTTTGCG 253
Query 299 ACGTTTCCGATTGGGTTAAATCTCATCCCGGAGGCGAAGCAGCGATTCTCAATCTCGCCG 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 ACGTTTCCGATTGGGTTAAATCTCATCCCGGAGGCGAAGCAGCGATTCTCAATCTCGCCG 313
Query 359 GCCAAGACGTCACCGACGCGTTCATCGCTTACCATCCCGGAACCGCATGGCACCACTTAG 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 314 GCCAAGACGTCACCGACGCGTTCATCGCTTACCATCCCGGAACCGCATGGCACCACCTCG 373
Query 419 AAAAGCTTCACAATGGCTATCACGTGAGAGACCACCACGTGTCAGACGTCTCACGTGACT 478
|||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |
Sbjct 374 AAAAGCTTCACAATGGCTATCACGTGAGAGACTTCCACGTGTCTGACGTGTCACGTGATT 433
Query 479 ACCGTCGTTTAGCCGCCGAGTTCTCCAAACGCGGCCTCTTCGACAAAAAAGGTCACGTGA 538
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 ACCGCCGATTAGCCGCCGAGTTCTCCAAACGCGGCCTCTTCGACAAAAAAGGTCACGTGA 493
Query 539 CTCTTTACACACTCACGTGCGTCGGCGTCATGCTCGCGGCGGTTCTCTACGGCGTTTTGG 598
|||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 494 CTCTCTACACGCTCACGTGCGTCGGTGTAATGCTCGCGGCGGTTCTCTACGGCGTTTTGG 553
Query 599 CGTGTACCAGCATCTGGGCTCACCTCATCTCCGCCGTTTTACTCGGTCTCCTCTGGATCC 658
||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 554 CGTGTACCAGCGTCTGGGCTCACCTCATCTCCGCCGTCTTACTCGGCCTCCTCTGGATCC 613
Query 659 AAAGCGCTTACGTCGGCCACGATTCCGGTCACTACACGGTGACGTCAACCAAACCGTGTA 718
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 614 AGAGCGCTTACGTCGGCCACGATTCCGGTCACTACACGGTGACGTCGACCAAACCGTGTA 673
Query 719 ACAAACTAATCCAGCTTCTCTCCGGTAACTGTCTCACCGGCATCTCAATCGCGTGGTGGA 778
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 674 ATAAACTAATCCAGCTTCTCTCCGGTAACTGTCTCACCGGAATCTCAATCGCGTGGTGGA 733
Query 779 AATGGACGCACAACGCTCACCACATCGCTTGTAACAGCCTTGACCACGATCCGGATCTAC 838
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 734 AATGGACGCACAACGCTCACCACATCGCTTGTAACAGCCTTGATCACGATCCAGATCTAC 793
Query 839 AACACATCCCGATCTTCGCCGTCTCTACAAAATTCTTCAATTCGATGACGTCACGTTTCT 898
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 794 AACACATCCCGATCTTCGCCGTCTCAACCAAATTCTTCAATTCGATGACGTCACGTTTCT 853
Query 899 ATGGCAGGAAATTAACATTCGATCCTCTAGCTCGATTCTTAATCAGCTACCAACACTGGA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 ATGGCAGGAAATTAACATTCGATCCTCTAGCTCGATTCTTAATCAGCTACCAACACTGGA 913
Query 959 CATTTTACCCAGTAATGTGCGTCGGAAGAATCAACCTCTTCATCCAAACATTCCTATTGC 1018
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 914 CATTTTACCCAGTAATGTGCGTCGGAAGAATCAATCTCTTTATCCAAACATTCCTATTGC 973
Query 1019 TATTCTCGAAACGCCACGTCCCAGATCGGGCCTTGAACATCGCCGGAATTTTAGTTTTCT 1078
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 974 TATTCTCGAAACGCCACGTCCCAGATCGAGCCTTAAACATCGCCGGAATTTTAGTTTTCT 1033
Query 1079 GGACATGGTTCCCTCTCTTAGTCTCGTTCCTTCCGAA-TTGG-CAAGAGAGATTCATCTT 1136
||||||||||||| |||||||||||||| ||||| || |||| || ||||||||||||||
Sbjct 1034 GGACATGGTTCCCGCTCTTAGTCTCGTTTCTTCC-AAGTTGGTCA-GAGAGATTCATCTT 1091
Query 1137 CGTCTTCGTGAGCTTCGCCGTCACGGCGATTCAACATGTTCAGTTCTGTTTAAACCATTT 1196
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1092 CGTCTTCGTTAGCTTCGCCGTCACTGCGATTCAACACGTTCAGTTCTGTTTAAACCATTT 1151
Query 1197 CGCAGCAGATGTGTATACCGGTCCACCAAACGGAAACGATTGGTTTGAGAAACAAACCGC 1256
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1152 CGCAGCAGATGTTTATACCGGTCCACCTAACGGAAACGATTGGTTCGAGAAACAAACCGC 1211
Query 1257 CGGTACGCTTGATATATCGTGTAGATCGTTTATGGATTGGTTCTTTGGTGGATTGCAGTT 1316
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1212 CGGTACGCTTGATATATCGTGTAGATCGTATATGGATTGGTTCTTTGGTGGATTGCAGTT 1271
Query 1317 TCAGTTAGAGCATCATTTGTTTCCTCGGCTTCCTCGTTGTCATCTCCGGACAGTATCGCC 1376
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1272 TCAGTTAGAGCATCATTTATTTCCTCGGCTTCCTCGTTGTCATCTCCGGACAGTATCTCC 1331
Query 1377 GGTGGTTAAGGAGCTTTGTAAGAAGCATAATCTACCGTATAGGAGTCTTTCGTGGTGGGA 1436
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1332 GGTGGTTAAGGAGCTTTGTAAGAAGCATAATCTTCCTTATAGGAGTCTTTCGTGGTGGGA 1391
Query 1437 AGCTAATGTGTGGACGATTAGGACTTTGAAGAACGCGGCGATTCAAGCTAGAGATGCGAC 1496
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1392 GGCTAATGTGTGGACGATTAGGACTTTGAAGAATGCGGCGATTCAAGCTAGAGATGCGAC 1451
Query 1497 TAATCCTGTGTTGAAGAACTTGCTTTGGGAAGCTGTGAACACGCATGGCTAAAAAGGTGT 1556
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1452 TAATCCTGTGTTGAAGAACTTGCTTTGGGAAGCTGTGAATACTCATGGCTAAAAAGGTGT 1511
Query 1557 TTCGTTTGTCGAGTACTTTTTAATTAGATTGAA-CTGTTTTAGGTGTAACTCTACCGTGA 1615
||||||||| || ||||| |||||||| ||||| |||||||||||||||||||||| |||
Sbjct 1512 TTCGTTTGTGGACTACTTCTTAATTAGTTTGAATCTGTTTTAGGTGTAACTCTACCATGA 1571
Query 1616 TAAAAAA 1622
| |||||
Sbjct 1572 TCAAAAA 1578
Score = 195 bits (105), Expect = 1e-48
Identities = 127/137 (93%), Gaps = 4/137 (3%)
Strand=Plus/Plus
Query 1 ATCGATTCcaaaacagtaaacaaacaaaaaacacacacacaaaTATAAGGAAGAGAAGGC 60
||||||||||||||||||||||||| ||||| | | | |||||||||| ||||| |||||
Sbjct 1 ATCGATTCCAAAACAGTAAACAAAC-AAAAA-A-A-ATACAAATATAAAGAAGAAAAGGC 56
Query 61 GTAGAATCGATTCAGAATCTGTGAATTACGAATCCATAGAGAGAAAGGTTTTGCATTTGC 120
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 57 GTAGAATCGATTCAAAATCTGTGAGTTACGAATCCATAGAGAGAAAGGTTTTGCATTTGC 116
Query 121 AACCTTTCTCAAATTGG 137
|||||||||||| ||||
Sbjct 117 AACCTTTCTCAATTTGG 133
> Ahg939212 jgi|Araly1|939212|scaffold_503403.1
Length=1390
Score = 992 bits (537), Expect = 0.0
Identities = 1111/1384 (80%), Gaps = 55/1384 (4%)
Strand=Plus/Plus
Query 191 GTTCATCAATGGCGGATCAAACGAAG-AAGAGATACGTTAC-AAGCG-AGGATTTGAAAA 247
||| |||||||||||| | ||| || || || ||| |||| || || || | || ||||
Sbjct 14 GTT-ATCAATGGCGGAAGAGACGGAGAAAAAG-TACATTACGAA-CGAAGAACTT-AAAA 69
Query 248 AACACAACAAACCTGGAGATTTATGGATTTCGATTCAAGGTAAAGTTTACGACGTTTCCG 307
||||||||||| |||| ||| ||||||| |||||||||| || || ||| |||| ||||
Sbjct 70 AACACAACAAATCTGGGGATCTATGGATCGCGATTCAAGGCAAGGTCTACAACGTCTCCG 129
Query 308 ATTGGGTTAAATCTCATCCCGGAGGCGA-AGCAGCGATTCTCAATCTCGCCGGCCAAGAC 366
||||| ||||| |||||||||| ||||| | | | |||||||||||||| || ||||||
Sbjct 130 ATTGGATTAAAACTCATCCCGGTGGCGACA-CCGTGATTCTCAATCTCGTTGGTCAAGAC 188
Query 367 GTCACCGACGCGTTCATCGC-TTACCATCCCGGAACCGCATGGCACCACT-TAGA-AA-A 422
|||||||| || |||||||| || |||||||||||||| ||||| || | | || ||
Sbjct 189 GTCACCGATGCTTTCATCGCATT-TCATCCCGGAACCGCTTGGCATCA-TCTCGACAATC 246
Query 423 GCTTCACAATGGCTATCACGTGAGAGACCACCACGTGTCAGACGTCTCACGTGACTACCG 482
|||||| || || ||| | ||||| ||| || || || |||||||| || |||||
Sbjct 247 TCTTCAC--CGGTTACCACATCAGAGATTTCCAAGTCTCTGAAGTCTCACGCGATTACCG 304
Query 483 TCGTTTAGCCGCCGAGTTCTC-CAAACGCGGCCTCTTCGACAAA-AAAGGTCACGTGACT 540
||| | || |||||||| || |||| ||| |||||||| ||| ||||||||||| |||
Sbjct 305 TCGCATGGCTGCCGAGTT-TCGTAAACTCGGTCTCTTCGA-AAACAAAGGTCACGTTACT 362
Query 541 CTTTACACACTCA-CGTGCGTCGGCGTCATGCTCG-CGGCGGTTCTCTACGGCGTTTTGG 598
|| ||||| | | | | ||||| || |||| ||| |||| ||||||||||| |||||||
Sbjct 363 CTCTACAC-TTTAGCCTTCGTCGCCGCCATGTTCGTCGGC-GTTCTCTACGGTGTTTTGG 420
Query 599 CGTGTACCAGCATCTGGGCTCACCTCATCTCCGCCG-TTTTACTCGGTCTCCTCTGGATC 657
| ||||| | ||| ||||||| ||| |||||| || ||||| ||||||||||||
Sbjct 421 CTTGTACTTCCGTCTTCGCTCACCAAATCGCCGCCGCGCTT-CTCGGACTCCTCTGGATC 479
Query 658 CAAAGCGCTTACGTCGGCCACGATTCCGGTCACTACACGGTGACGTC-AACCAAACCGTG 716
|| ||||||||| | || |||||||| ||||| ||| || | ||| || |||| | |
Sbjct 480 CAGAGCGCTTACATAGGTCACGATTCAGGTCATTACGTAGTCATGTCGAA-CAAATCTTA 538
Query 717 TAACAAACTAATC-CAGCTTCTCTCCGGTAACTGTCTCACCGGCATCTCAATCGCGTGGT 775
||||| | | | ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 539 TAACAGA-TTCGCTCAGCTTCTCTCCGGTAACTGTCTCACCGGAATCTCAATCGCTTGGT 597
Query 776 GGAAATGGACGCACAACGCTCACCACATCGCTTGTAACAGCCTTGACCACGATCCGGATC 835
|||||||||| ||||| ||||| ||| | |||||||||||||| || ||||||| ||||
Sbjct 598 GGAAATGGACTCACAATGCTCATCACTTAGCTTGTAACAGCCTCGATTACGATCCAGATC 657
Query 836 TACAACACATCCC-GATCTTCGCCGTCTCTACAAAATTCTTCAATTCGAT-GACGTCACG 893
||||||||||||| | ||||||||||||| || ||||||||||| || || ||| |||||
Sbjct 658 TACAACACATCCCTG-TCTTCGCCGTCTCCACCAAATTCTTCAACTC-ATTGACATCACG 715
Query 894 TTTCTATGG-CAGGAAATTAACATTCGATCCTCTAGCTCGATTCTTAATCAGCTACCAAC 952
||||| | | ||||| | || || ||||| | || ||||||| |||||||| ||||
Sbjct 716 ATTCTACGATC-GGAAACTCACGTTTGATCCAGTCGCGAGATTCTTGATCAGCTATCAAC 774
Query 953 ACTGGACATT-TTACCCAGTAATGTGCGTCGGAAGAATCAACCTCTTCATCCAAACATTC 1011
||| || || ||| ||||| |||||| ||||||||||||| |||||||| ||||| ||
Sbjct 775 ACTTTAC-TTATTATCCAGTTATGTGCTTCGGAAGAATCAATCTCTTCATTCAAACGTTT 833
Query 1012 CTATTGCTATTCTCGAAACGCCACGTCCCAGATCGGGCCTTGAACATCGCCGGAATTTTA 1071
| ||||| ||||| ||||| | ||||||||||| || || ||| |||||||||| |||
Sbjct 834 ATCTTGCTCTTCTCCAAACGTGAAGTCCCAGATCGTGCTTTAAACTTCGCCGGAATCTTA 893
Query 1072 GTTTTCTGGACATGGTTCCCTCTCTTAGTCTCGT-TCCTTCCGAATTGGCAAGAGAGATT 1130
|| |||||||| |||||||||||||||||||| | || | || || |||| || |||||
Sbjct 894 GTCTTCTGGACTTGGTTCCCTCTCTTAGTCTCATGTC-TACCAAACTGGCCTGAAAGATT 952
Query 1131 CATCTTCGTCTTCGTGAGCTTCGCCGTCACGGCGATTCAACATGTTCAGTTCT-GTTTAA 1189
| ||||||||||| |||||| ||||||||||| ||||||| |||| ||| | ||||
Sbjct 953 CTTCTTCGTCTTCACAAGCTTCACCGTCACGGCGCTTCAACACATTCAATTCACGCTTAA 1012
Query 1190 ACCATTTCGCAGCAGATGTGTATACCGGTCCACCAA-ACGGAAACGATTGGTTTGAGAAA 1248
||||||||| || ||||| || |||||||| | | || | ||| ||||| |||||
Sbjct 1013 -CCATTTCGCTGCGGATGTCTACGTTGGTCCACCCACA-GGTAGCGACTGGTTCGAGAAG 1070
Query 1249 CAAACCGCCGGTACGCTTGATATATCGTGTAGATCGTTTATGGATTGGTTCTTTGGTGGA 1308
||| | || || || | ||||| || |||||||| | |||||||||||||||||||||
Sbjct 1071 CAAGCTGCAGGAACAATCGATATCTCTTGTAGATCATACATGGATTGGTTCTTTGGTGGA 1130
Query 1309 TTGCAGTTTCAG-TTAGAGCATCATTTGTTTCCTCGGCTTCCTCGTTGTCATCTCCGGAC 1367
|| ||||||||| || |||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 1131 TTACAGTTTCAGCTT-GAGCATCATTTGTTCCCTCGGCTACCTCGTTGCCATCTCCGGAA 1189
Query 1368 AGTATCGCCGGTGGTT-AAGGAGCTTTGTAAGAAGCATAATCTACCGTATAGGAGTCTTT 1426
||| || ||||||||| ||| ||||||| |||||||||||||| || ||||||||| | |
Sbjct 1190 AGTTTCTCCGGTGGTTCAAG-AGCTTTGCAAGAAGCATAATCTTCCTTATAGGAGTATGT 1248
Query 1427 CGTGGTGGGAAGCTAATGTGTGGACGATTAGGACTTTGAAGA-ACGCGGCG-ATTCAAGC 1484
|||||| ||||| ||||||| ||| |||| |||||||||| | || || || |||||
Sbjct 1249 CGTGGTTTGAAGCAAATGTGTTGACTATTAACACTTTGAAGACA-GCAGCTTAT-CAAGC 1306
Query 1485 TAGAGATGCGACTAATCCTGTG-TTGAAGAACTTGCTTTGGGAAGCTGTGAACACGCATG 1543
|||||||||| ||||||| ||| || ||||||||| ||||||||||| |||| || ||||
Sbjct 1307 TAGAGATGCGGCTAATCCGGTGGTT-AAGAACTTGGTTTGGGAAGCTTTGAATACTCATG 1365
Query 1544 GCTA 1547
||||
Sbjct 1366 GCTA 1369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62163279840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5