BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46220.1
Length=1123
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483769 jgi|Araly1|483769|fgenesh2_kg.4__2829__AT2G46220.1 1314 0.0
> Ahg483769 jgi|Araly1|483769|fgenesh2_kg.4__2829__AT2G46220.1
Length=985
Score = 1314 bits (711), Expect = 0.0
Identities = 855/921 (93%), Gaps = 24/921 (3%)
Strand=Plus/Plus
Query 5 AGAATCGTTATCCATGCGGACTTGAAAAATTATCCTTAGGAGATTTTTCCTGACCTATCC 64
||||||||||||||||||||| ||||| |||||||||| |||| ||||||||||||||||
Sbjct 1 AGAATCGTTATCCATGCGGAC-TGAAAGATTATCCTTA-GAGAATTTTCCTGACCTATCC 58
Query 65 TCGCGTCGC-GCCTTCTTGTCTTCTCTCTCAATCCAGCATATTCCTACGCAAATCCCTTA 123
||||||||| |||||| |||||||||||||||||| || | || | ||| || ||||
Sbjct 59 TCGCGTCGCAACCTTCTCGTCTTCTCTCTCAATCCA-CA-AAGCC-A-GCATATTCCTTC 114
Query 124 TCGTTTTCATGTTTGTC-CTGGTTTAAATCTTCAATCTCCTACCCGG-TCTTTTCATCCT 181
||||||||||||||| | || |||||||||||||||||||| ||||| | ||||||||||
Sbjct 115 TCGTTTTCATGTTTG-CTCTAGTTTAAATCTTCAATCTCCTTCCCGGTTTTTTTCATCCT 173
Query 182 CCGATGGCATTCCTTGTTCGTTCGCCGGAGATACCCACCGTCTCGGCGAGAATCTTCTCC 241
||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||
Sbjct 174 CCGATGGCATTCCTTGTTCGTTCGCCGGAAATTCCCACCTTCTCGGCGAGAATCTTCTCC 233
Query 242 GATGCGAATTCGAGTGTTATTAGTCATGTGTTTATGAGGAGGAAGGCTACGGTTTCGGCG 301
||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||| | |
Sbjct 234 GATTCGAATTCGAGTGTTATTAGTCATGCGTTTATGAGGAGGAAGGTTACGGTTTCAGTG 293
Query 302 ATTGACGCCAGAGATTTGCCTGGTGTTAAGAATCCGAAATCGAGATTGTACTGG-CAATT 360
|||||||| | ||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 294 ATTGACGCAAAAGATTTGTCTGGTGTTAAGAATCCGAAATCGAGATTGTAC-GGAAAATT 352
Query 361 CTCAGCTCCGGTgaaagaagactacaagattagcagagaggaggaagaagaagaagaaga 420
||||||||||||||||||||||| |||||||||| | | || || ||||||||
Sbjct 353 CTCAGCTCCGGTGAAAGAAGACTGCAAGATTAGC-------A-G-AG-AG--GAAGAAGA 400
Query 421 agataagcagagTTACTACGTGAATATGGGTCACGCCGTTCGTAGTATCAGAGAAGAGTT 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 AGATAAGCAGAGTTATTACGTGAATATGGGTCACGCCGTTCGTAGTATCAGAGAAGAGTT 460
Query 481 TCCTTTGTTGTTCTACAAAGAGCTTAATTTTGACATTTACAGGGATGATATTGTTTTCAA 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 461 TCCTTTGTTGTTCTACAAAGAGCCCAATTTTGACATTTACAGGGATGATATTGTTTTCAG 520
Query 541 AGACCCTATGAACACTTTCATGGGAATTGATAACTACAAATCCATATTTGGGGCCTTACG 600
||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 521 AGACCCTATGAACACATTCATAGGAATTGATAACTACAAATCCATATTTTGGGCCTTACG 580
Query 601 TTTCCATGGAAGGATCTTCTTCAGAGCACTATGTGTGGACATTGTTAGTGTTTGGCAACC 660
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 581 TTTCCATGGAAGGATCTTCTTCAGAGCACTCTGTGTTGACATTGTTAGTGTTTGGCAACC 640
Query 661 CACAGAGAACACTCTGATGATACGATGGACTGTTCATGGAATTCCTCGTGGTCCGTGGGA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 641 TACAGAGAACACTCTGATGATACGATGGACTGTTCATGGAATTCCTCGTGGTCCTTGGGA 700
Query 721 GACTCGTGGTCGATTCGATGGTACTTCTGAGTATAAATTCGATAAGAATGGCAAGATTTA 780
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 701 GACTCGTGGTCGATTCGATGGTACTTCTGAGTATAAATTCGATAAGAGTGGGAAGATTTA 760
Query 781 TGAGCATAAAGTCGATAACATAGCCATTAATTCGCCTCCAAAGTTTCAAATGCTCACTGT 840
||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 761 TGAACATAAAGTGGATAACATCGCCATTAATTCGCCTCCAAAGTTTCAAATGCTCACTGT 820
Query 841 TCAAGAGCTTGTTGAAGCCATTAGCTGCCCTTCGACTCCCAAGCCGACCTACTTTGAGTT 900
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 821 TCAAGAGCTTGTTGAAGCCATTAGCTGCCCTTCTACTCCCAAGCCGACCTACTTTGAGTT 880
Query 901 CGGAGATTGATTCATCATCAT 921
|||||||||||||||||||||
Sbjct 881 CGGAGATTGATTCATCATCAT 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41858962866
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5