BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46225.2
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483770 jgi|Araly1|483770|fgenesh2_kg.4__2830__AT2G46225.1 1149 0.0
> Ahg483770 jgi|Araly1|483770|fgenesh2_kg.4__2830__AT2G46225.1
Length=1269
Score = 1149 bits (622), Expect = 0.0
Identities = 680/708 (96%), Gaps = 3/708 (0%)
Strand=Plus/Plus
Query 13 AGAGTCCTTTGGATTTGGAATCGCTTCTACTTCACTCTCACCTTCCTCCTAT-TCTCTCT 71
|||||||||||||||||||||||||||||||||||||| |||||| |||| | |||||||
Sbjct 1 AGAGTCCTTTGGATTTGGAATCGCTTCTACTTCACTCTGACCTTCGTCCTCTCTCTCTCT 60
Query 72 CTCTTTCTATGTCAAGTTAGCTTAGCCGTCTCACCAGAAAGCTAACCTTACCTCACAAAC 131
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 61 CTCTTTCTCTGTCAAGTTAGCTTAGCCGTCTCACCAGAAAGCTAGCCTTACCTCACAAGC 120
Query 132 ATTGATTGTGTTACACTAATCTCTTAAATAGAGAGCCGTAATTTCTACACACTCTGATCG 191
||||| | |||||||||||||||| ||| |||||||||||||| ||||||||||||||
Sbjct 121 ATTGA-T-TGTTACACTAATCTCTCGTATACAGAGCCGTAATTTCAACACACTCTGATCG 178
Query 192 CTAGATGGAAACGGAGATATCAGGAATGGATAATCCAGCTATGACCTTGGACGAGGTTTC 251
||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 179 CTAAATGGAAACGGAGATATCGGGAATGGATAATCCAGCAATGACCTTCGACGAGGTTTC 238
Query 252 CATGGAACGCAACAAGAGCTTCGTTAAGGCATTGCAGGAGCTCAAGAACTTGAGGCCTCA 311
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 239 CATGGAACGCAGCAAGAGCTTCGTTAAGGCATTGCAGGAGCTCAAGAACTTGAGGCCACA 298
Query 312 ACTTTATTCAGCTGCTGATTACTGTGAAAAGTCTTATCTTCATAGCGAGCAAAAGCAAAT 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ACTTTATTCAGCTGCTGATTACTGTGAAAAGTCTTATCTTCATAGCGAGCAAAAGCAAAT 358
Query 372 GGTATTGGACAATTTGAAAGACTACACTGTGAAGGCTCTAGTTAATGCTGTTGATCACCT 431
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 359 GGTATTGGACAATTTGAAAGACTACACTGTAAAGGCTCTAGTTAATGCTGTTGATCACCT 418
Query 432 TGGAACTGTAGCTTCCAAGCTTACTGATCTTTTTGATCACCAAAATTCAGACATATCAAC 491
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 419 TGGAACTGTAGCTTCCAAGCTTACTGATCTTTTTGATCAGCAAAATTCAGACATATCAAC 478
Query 492 TATGGAAATGAGAGCTTCTTGTGTTAGCCAGCAACTGCTTACATGCCGGACATATATCGA 551
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 479 TATGGAGTTGAGAGCTTCTTGTGTTAGCCAGCAACTGCTTACATGCCGGACTTATATCGA 538
Query 552 CAAAGAAGGTCTTAGACAGCAACAGCTATTAGCAGTTATCCCATTGCATCACAAGCATTA 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CAAAGAAGGTCTTAGACAGCAACAGCTATTAGCAGTTATCCCATTGCATCACAAGCATTA 598
Query 612 CATTCTTCCCAATTCTGTTAACAAGCGGGTACACTTTAGTCCTCTCAGACGAACTGACAC 671
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 599 CATTCTTCCCAATTCAGTTAACAAGCGGGTACACTTTAGTCCTCTTAGACGAACTGACAC 658
Query 672 AAGACAGAATCATTACCAAGCTATATCCCGTCTTCAACCTTCAGGTGC 719
|||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 659 AAGACAGAATCATTACCAAGCTATATCCCGTCTTCAACCTTCAGATGC 706
Score = 852 bits (461), Expect = 0.0
Identities = 538/574 (94%), Gaps = 9/574 (2%)
Strand=Plus/Plus
Query 804 CTT-AGATGCCCCTGCATCGAAATCACTCTCCTGGCATTTAGGCTCAGAGACCAAGTCTA 862
||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 697 CTTCAGATGCTCCTGCATCAAAATCACTCTCCTGGCATTTAGGCTCAGAGACCAAGTCTA 756
Query 863 CCCTCAAAGGAACATCCACAGTTGCACCAAGCTCCAAAGATTCAAAAGCTTTCTCAAAGA 922
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 757 CCCTCAAAGGAACATCCACAGTTGCACCAAGTTCCAAAGATTCAAAAGCTTTCACAAAGA 816
Query 923 CATCTGGAGTGTTCCATCTCTTAGGTGATGATGAAAACATAGCAAACAAGAAGCCTTTGG 982
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||
Sbjct 817 CATCTGGAGTGTTCCATCTCTTAGGTGATGAAGAAAACATAGTAAACAAGAAGCCTTCGG 876
Query 983 CTGGTTCTCAGGTCTCAGGTGTTCCTGCTGCATCCACTGCCCATAAGGATTTGGAGGTTC 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 CTGGTTCTCAGGTCTCAGGTGTTCCTGCTGCATCCACTGCCCATAAGGATTTGGAGGTTC 936
Query 1043 CGAAACTTCTAACTGCACACAGGTCACTTGATAACAACCCGCGACGAGAGATCATTCAAG 1102
| |||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 937 CCAAACTTCTGACTGCACACAGGTCACTTGACAATAACCCGCGACGAGAGATCATTCAAG 996
Query 1103 CTCCTGTCCGGACAAAGAGTGTTCTTTCTGCGTTCTTTGTTAAACAGAAAACTCCAAAGC 1162
||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||
Sbjct 997 CTCCTGTCCGGACAAAGAGTGTTCTTTCTGCGTTCTTCGTCAAACAGAAAGCTCCAAAGC 1056
Query 1163 TCAAAGCTGGCTATGTCTCGTGAAAACACCAACTCTTTGTACTGAGAAGGAAATTTCAAT 1222
||||||| ||||| ||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 1057 TCAAAGCCGGCTACGTCTCGTGAAAACACCAACTCTTTGTACTGATAAGGAA-TGTCAAT 1115
Query 1223 CTCATACCACGTTTCTTTTACCTTA-TA-TAATAACATGTTGATTTTCATGTAATTATCT 1280
||||||||||||||||||| |||| || |||||||| ||||||||| ||||||||||||
Sbjct 1116 GTCATACCACGTTTCTTTTATCTTAATAATAATAACAGGTTGATTTTAATGTAATTATCT 1175
Query 1281 TAATCACCACATCA-A-C---GTACGAAGTCCAGTAAGACATGATTTTGGTCTATCATTA 1335
|||||||||||||| | | ||||||| |||| ||||| |||||||||||| ||||||
Sbjct 1176 TAATCACCACATCACATCAACGTACGAAATCCAACAAGACGTGATTTTGGTCTGTCATTA 1235
Query 1336 ACAAAACTGTGTAATAGATTAAGAATGTGTTTTT 1369
||||||||||||||||||||||||||||||||||
Sbjct 1236 ACAAAACTGTGTAATAGATTAAGAATGTGTTTTT 1269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52450267365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5