BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46230.1
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322277 jgi|Araly1|322277|fgenesh1_pm.C_scaffold_4002334 795 0.0
Ahg912397 jgi|Araly1|912397|Al_scaffold_0001_2651 793 0.0
Ahg483770 jgi|Araly1|483770|fgenesh2_kg.4__2830__AT2G46225.1 99.0 6e-20
> Ahg322277 jgi|Araly1|322277|fgenesh1_pm.C_scaffold_4002334
Length=537
Score = 795 bits (430), Expect = 0.0
Identities = 468/487 (96%), Gaps = 0/487 (0%)
Strand=Plus/Plus
Query 110 ATGGGAAAGGCAAAGAAACCTCAAAAGTTTGCTGTCGTGAAGAAGATGATTAGCCACAAA 169
||||||| |||||||||| ||||||||||||||||| | |||||||| ||||||||||||
Sbjct 1 ATGGGAAGGGCAAAGAAAGCTCAAAAGTTTGCTGTCATCAAGAAGATTATTAGCCACAAA 60
Query 170 GCTTTGAAGCATTACAAGGAAGAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTT 229
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 61 GCTTTGAAGCATTACAAGGAGGAGGTTTTGAATCCAAACAAGAAGGACCTCACGGAACTT 120
Query 230 CCGAGAAACGTACCGAGTGTTCCTGCAGGGCTTTTCTTTTCTTACAACTCTACATTGGTT 289
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 CCGAGAAACGTTCCGAGTGTTCCTGCAGGGCTTTTCTTTTCTTACAACTCGACATTGGTT 180
Query 290 CCTCCTTACCGTGTTTTGGTGGATACTAACTTCATCAACTTCTCTATCCAGAATAAGATC 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCTCCTTACCGTGTTTTGGTGGATACTAACTTCATCAACTTCTCTATCCAGAATAAGATC 240
Query 350 GATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATTGCACTCCTTGTATCACGGAT 409
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATCTTGAGAAGGGAATGAGAGACTGTCTGTACGCAAATTGCACTCCTTGTATCACGGAC 300
Query 410 TGTGTCATGGCTGAGTTAGAGAAGTTAGGTCAGAAGTATCGTGTAGCTCTAAGGATTGCG 469
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 TGCGTCATGGCTGAGTTAGAGAAGTTAGGTCAGAAGTATCGTGTTGCTCTAAGGATTGCG 360
Query 470 AAAGATCCTCACTTCGAAAGACTACCTTGTATACACAAAGGGACATATGCTGATGACTGT 529
|||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 361 AAAGATCCTCGTTTCGAAAGACTACCTTGTGTACACAAAGGAACATATGCTGATGACTGT 420
Query 530 CTCGTTGACAGAGTTACTCAGCATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTA 589
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 421 CTCGTTGACAGAGTTACTCAGCATAAGTGCTTCATAGTGGCTACTTGTGATAGAGATTTA 480
Query 590 AAGCGAA 596
|||||||
Sbjct 481 AAGCGAA 487
> Ahg912397 jgi|Araly1|912397|Al_scaffold_0001_2651
Length=591
Score = 793 bits (429), Expect = 0.0
Identities = 545/599 (91%), Gaps = 16/599 (3%)
Strand=Plus/Plus
Query 110 ATGGGAAAG-GCAAAGAAACCTCAAAAGTTTGCTGTCGTGAAGAAGA-TGATTAGCCACA 167
||||| ||| ||||||||||||||||||||||||| |||| || | |||| |||||||
Sbjct 1 ATGGG-AAGATCAAAGAAACCTCAAAAGTTTGCTGTAATGAA-AAAATTGATAAGCCACA 58
Query 168 AAGCTTTGAAGCATTACAAGGAAGAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAAC 227
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 59 AAGCTTTGAAACATTACAAGGAGGAGGTTCTGAATCCAAACAAGAAGGACCTCACTGAAC 118
Query 228 TTCCGAGAAACGTACCGAGTGTTCCTGCAGGGCTTTTCTTTTCTTACAACTCTACATTGG 287
||||||||||||| || ||||||||| ||||||||||||||||| ||||||||| ||||
Sbjct 119 TTCCGAGAAACGTTCCAAGTGTTCCTTCAGGGCTTTTCTTTTCTCACAACTCTAGTTTGG 178
Query 288 TTCCTCCTTACCGTGTTTTGGTGGATACTAACTTCATCAACTTCTCTATCCAGAATAAGA 347
||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 179 TTCCTCCTTACCGGGTTTTGGTGGATACCAATTTCATCAACTTCTCTATCCAGAATAAGA 238
Query 348 TCGATCTTGAGAAGGGAATGA-GAGACTGTCTGTACGCAAATTGCACTCCTTGTATCACG 406
| ||||||||||||||||||| | |||||| |||||||||| ||||||||||||||||||
Sbjct 239 TTGATCTTGAGAAGGGAATGATG-GACTGTTTGTACGCAAAATGCACTCCTTGTATCACG 297
Query 407 GATTGTGTCATGGCTGAGTTAGAGAAGTTAGGTCAGAAGTATCGTGTAGCTCTAAGGATT 466
|| ||||||||||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 298 GACTGTGTCATGGCTGAGCTGGAAAAGTTAGGTCAGAAGTATCGTGTAGCTCTAAGGATT 357
Query 467 GCGAAA-GATCCTC-ACTTCGAAAGACTACCTTGTATACACAAAGGGACATATGCTGATG 524
|| ||| ||||| | | || ||||||||||||||| ||||||||||||||||||||||||
Sbjct 358 GC-AAAGGATCCCCGA-TTTGAAAGACTACCTTGTGTACACAAAGGGACATATGCTGATG 415
Query 525 ACTGTCTCGTTGACAGAGTTACTCAGCATAAATGCTTCATAGTGGCTACATGTGATAGAG 584
||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 416 ACTGTCTCGTTGACAGAGTTACTCAGCATAAGTGCTTCATAGTAGCTACTTGTGATAGAG 475
Query 585 A-CTTAAAGCGAAGGATTCGAAAGATTCCTGGTGTGCCCATCATGTATGTGACTA--ATC 641
| || ||||||||||||||| |||||||||||||| || |||||||||||||| | | |
Sbjct 476 ATCT-AAAGCGAAGGATTCGCAAGATTCCTGGTGTACCAATCATGTATGTGAC-ACGA-C 532
Query 642 GCAAGTACTCAATAGAGAAGTTGCCTGAAGCTACACTTGGTGGAGCTCCAAGGTACTGA 700
|||||||||||||||||||| |||||||||| ||| | |||||||||||||| ||||||
Sbjct 533 GCAAGTACTCAATAGAGAAGCTGCCTGAAGCAACAATCGGTGGAGCTCCAAGATACTGA 591
> Ahg483770 jgi|Araly1|483770|fgenesh2_kg.4__2830__AT2G46225.1
Length=1269
Score = 99.0 bits (53), Expect = 6e-20
Identities = 57/59 (97%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 901 AAAAACACATTCTTAATCTATTACACAGTTTTGTTAATGATAGACCAAAATCATGTCTT 959
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1269 AAAAACACATTCTTAATCTATTACACAGTTTTGTTAATGACAGACCAAAATCACGTCTT 1211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35644927395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5