BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46240.1
Length=3511
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483772 jgi|Araly1|483772|fgenesh2_kg.4__2832__AT2G46240.1 4735 0.0
> Ahg483772 jgi|Araly1|483772|fgenesh2_kg.4__2832__AT2G46240.1
Length=3468
Score = 4735 bits (2564), Expect = 0.0
Identities = 3194/3492 (91%), Gaps = 67/3492 (2%)
Strand=Plus/Plus
Query 1 GATCTGGAGAGCAGAAGAAATATCTTTTCCCTCTGAACGTTGTTGTTCGTCTTTCTATAA 60
|||||||||||||||||||||||||||||||||| || |||| |||||||||||||||
Sbjct 1 GATCTGGAGAGCAGAAGAAATATCTTTTCCCTCT-AA--ATGTTCTTCGTCTTTCTATAA 57
Query 61 ATCAAGAAATGTCTTTGGAT-TGTTCACTACCCATAG-AAAAAGCTGCAATCATCTGAAT 118
|||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 58 ATCAAGAAATGTCTTTGGATAT-TTCACTACCCATAGAAAAAAGCTGCAATCATCTGAAT 116
Query 119 CAGAAAGTAATTCGAAGAAGAAATCTGCtttttttAATTGGTGGAGAGAGTGAGAGAGCT 178
|||||||||| || |||||||||| ||| |||||| |||||||||||||| |||||||
Sbjct 117 CAGAAAGTAAATCAAAGAAGAAATTTGCGTTTTTTGTTTGGTGGAGAGAGT-TGAGAGCT 175
Query 179 TCGCAGGAACTGAGTCATCGGAATTTACGGATCGTTTCTGTTTCGTTTTTACTGGAA-TT 237
|||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| ||
Sbjct 176 TCGCAGGAACTGAGTCATCGGAATTTGCGGATCGATTCTGTTTCGTTTGTACTGGAATTT 235
Query 238 GGTTAAGTGATCTTGATTAAAGATGATGCCTGTGTACATGGATCCATCACAACCATGTCA 297
||||| ||| ||||| |||||||||||||||||||| ||| |||||||||||||| ||
Sbjct 236 TGTTAATTGAAGTTGATCAAAGATGATGCCTGTGTACACGGACCCATCACAACCATGCCA 295
Query 298 AATGAGACCAC-AGGAATACTATTATCAAGGATTTGGTAATAACTCTCAGCATATGGCAA 356
||||||||||| ||| ||||||| ||||||| ||||| |||||||||||||||||| |||
Sbjct 296 AATGAGACCACAAGG-ATACTATCATCAAGGGTTTGGGAATAACTCTCAGCATATGACAA 354
Query 357 TGGATGCTCCACCACCGTGTCATGGAAGCTGCGTTCACGGCAACTTT-C--C-T-----G 407
|||||||||||||||||||||||||||||||||||||||| |||||| | | | |
Sbjct 355 TGGATGCTCCACCACCGTGTCATGGAAGCTGCGTTCACGGTAACTTTCCTGCATACAACG 414
Query 408 CTTACTGGCCTCCTTGTTA-TC-C--C--CCACAAGTACCGTACCATCAATGCTGCATGA 461
||||||||||||||| ||| | | | |||||||||||||||||||||||||||||||
Sbjct 415 CTTACTGGCCTCCTTTTTACCCGCAACAACCACAAGTACCGTACCATCAATGCTGCATGA 474
Query 462 ATCGTTCCGCTTTCCATCCTCCTCACGCGTCTTACGCTCCGT-CTTGTTACGTTCATCCA 520
||| ||| | ||||||||||||||||||||||||||||| | ||||||| |||||||||
Sbjct 475 ATCATTCTGGGTTCCATCCTCCTCACGCGTCTTACGCTCC-TCCTTGTTATGTTCATCCA 533
Query 521 CCATTTCCAGTTGGTTATCAACCTTGGTTTGATGTTGAGAAGGATGTGCCTGGGAAGCAT 580
|||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct 534 CCATTTCCAGTTGGTTATCAACCTTGGTATGATGCTGACAAGGATGTGCCTGGGAAGCAT 593
Query 581 CACTGCGGGAAATGTTCTTCCCAGATGTGTGATTTGAAGAAAGACAGAGGCGTTGTGATT 640
||||| | ||||||||| ||||||| ||| | ||||| | ||||||||||||||||
Sbjct 594 CACTGTGCAAAATGTTCTCCCCAGATATGTAACCCGAAGAGTGGCAGAGGCGTTGTGATT 653
Query 641 GAAGAGCATGAG--C----CTGAG-ATTG-AGA-AAGGAGAAGCTGTACTTCCAGTTCGT 691
|||||||||||| | ||||| | | | | ||||||||||||||||||||||||||
Sbjct 654 GAAGAGCATGAGCCCGAAACTGAGAAAGGAAAACAAGGAGAAGCTGTACTTCCAGTTCGT 713
Query 692 TCTACTAACTGCCCTTACCCAATTATATGGATTCCTCATGAGAATGCTAGGAATCAGGAA 751
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TCTACCAACTACCCTTACCCAATTATATGGATTCCTCATGAGAATGCTAGGAATCAGGAA 773
Query 752 TATAGAAGCTCTCTTGGGTTAGGGAAGCATAACCAGCCTCCTGCTGAAGTTAGAGCTCCT 811
|| |||||||| |||||| |||||| |||||||||||| ||||||| |||| |||||||
Sbjct 774 CATGGAAGCTCTTTTGGGTCAGGGAACCATAACCAGCCTTCTGCTGAGGTTAAAGCTCCT 833
Query 812 GACAATATGACGATTCAGAAAAGTTTTCCTGAATCTTGGCGTGGTTGTTTTCCATTTGAT 871
|| ||||||||||| ||||||||||||||| | ||||||| ||| ||||||||||| ||
Sbjct 834 GAGAATATGACGATACAGAAAAGTTTTCCTCAGTCTTGGCATGGCTGTTTTCCATTCGAC 893
Query 872 GAGAGCAGCATGAAGTCGTTGGTACAGAATCAAGACAGTAAAAAGGCGCAGAATGGGAAA 931
||||||| ||||||||| |||||||||||||||||||| || ||||| ||||||||||||
Sbjct 894 GAGAGCACCATGAAGTCATTGGTACAGAATCAAGACAGGAAGAAGGCCCAGAATGGGAAA 953
Query 932 ACCGTGGAAGC-CCCGTTTGATATCAGCAAATTCAAATCCTTATTGCAAGGTCAAGACAT 990
||||| ||| | ||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 954 ACCGTCGAA-CTCCCATTTGATATCAGCAAGTTGAAATCCTTATTGCAAGGTCAAGACAT 1012
Query 991 GAAGGAAGCGCAAATCCAGAAGAACAAGGAAGAGCT-GGGACAGCTTACGTATCCTACTT 1049
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1013 GAAGGAAGCGCAAATCCAGAAGAACAAGGAAGAG-TCGGGACAGCTTACGTATCCTACTT 1071
Query 1050 CTTGGGTTCCATCTCGTCGGAAACGAGATGATGTTGAAGCTTCTGAGAGTAGTAATGAAG 1109
||||| |||||||||| ||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1072 CTTGGACTCCATCTCGTGGGAAACGGGATGATGTTGAAGCTTCTGAGAGTAGTAAGGAAG 1131
Query 1110 ACAGGAAAAAGATGCAGAATGGGAAAACGGTGGAATACCCGTTTGATATCAGCATGATAA 1169
||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||| | |||
Sbjct 1132 ACAGGAAAACGATGCAGAATGGGAAAACTGTGGAGTACCCATTTGATATCAGCAAGTTAA 1191
Query 1170 AATCCTTAATCCAGGGTCAAGATGTGAAGGAAGCGCAGAACCAGAAGAACAAGGAAGAGC 1229
|||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1192 AATCCTTATTGCAGGGTCAAGATGTGAAGGAAGCGCAGAACCAGAAGAACAAAGAAGAGC 1251
Query 1230 CTGGACAGGTTCCGTATCCTATTTTTTGGATACCATCTTATGGGAAACGGAAAGATGTTG 1289
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1252 CTGGACAGGTTCCGTATCCTATTTTTTGGATACCATCTTATGAGAAACGGGAAGATGTTG 1311
Query 1290 AAGCTTCTGAGAGTAAGGAGAGTAGTAATGAAGGGCGTAACTTGGAGTCTTGCCCCTCTG 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1312 AAGCTTCTGAGAGTAAGGAGAGTAGTAATGAAGGGCGTAACTTGGAGTCTTGCTCCTCTG 1371
Query 1350 ATCTCCACAGAAATGAAGGGCAGATAACT-CAAGCAA--AAGGCAAAGAAGGGAATTTTG 1406
||| ||||| |||||||| || | || | ||| || ||||||||||| |||| ||||
Sbjct 1372 ATCCCCACATTAATGAAGGTCATA-AAATCCAA--AAGGAAGGCAAAGAAAGGAACTTTG 1428
Query 1407 AGTGCAATGTACTTTCAGATGCGGAGGAGAAGAGCTCTGTAATAAATATCCCAGTGGCGA 1466
|||||||||| || ||||||||||| |||||||| ||||||| |||||||||||| ||
Sbjct 1429 AGTGCAATGTTCTCTCAGATGCGGATGAGAAGAGTTCTGTAAGAAATATCCCAGTAAAGA 1488
Query 1467 ACCATCTACAGGAACCAAGAAATATTCCAGTGAAACTATCAGAAAACCATCTGCCTAAAC 1526
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1489 ACCATCTACAGGAACCAAGAAATATTCCCGTGAAACTATCAGAAAATCATCTGCCTAAAC 1548
Query 1527 CAACGGAGCCAACCAAAAGGATTGCAAAGAATGAGCCAGTTAA-GAGCACaaaaaaaGAG 1585
||||||||| ||||||||| |||||||||||||| ||||||| || ||||| |||||||
Sbjct 1549 CAACGGAGCGGACCAAAAGGTTTGCAAAGAATGAGTCAGTTAAGGA-CACAACAAAAGAG 1607
Query 1586 CAGTCTTCGTCATCATCAG-AAGCATCCAAGTTGCCTCCGGTTTGTCTGCGTGTTGACCC 1644
||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1608 CAGTCTTCGTCATCATC-GAAAGCATCCAAGTTACCTCCGGTTTGTCTGCGTGTTGACCC 1666
Query 1645 ATTACCGAAAG-AGAGAAATGGTGGTTCCAAATCAGTAAGTCATCCTAAACGGATGGAAA 1703
|| ||| ||| ||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1667 GTTGCCG-AAGAAGAGAAATGGTGGTTCCAAATCAGTAAATCATCCTAAACAGATGGAAG 1725
Query 1704 AATCTAAGGAGACTAAGATCGCGGCTCCACTGTC-CTCCAAGAAGGCTGAATCAAGGACT 1762
||||||||||||||||||||||| | |||||| | |||||||||||||||||||| ||||
Sbjct 1726 AATCTAAGGAGACTAAGATCGCGTCCCCACTG-CGCTCCAAGAAGGCTGAATCAACGACT 1784
Query 1763 GTTCCTGAGGCTTGTAATGTAAAATGTGAAGACGCAAACGCAGAAATGAAGATGGCTGAG 1822
||| |||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 1785 GTTTCTGAGGCTTGTAATGTAAAATGTGAAGAGGCAAACGAAGAAAAGAAGATGGCTGAG 1844
Query 1823 GGAAGCCTAAACGCATTAAGAACAGAAAAAGGATCAGTTGAGAGCAATTCTAATCTTCAA 1882
|||||||||||||||||| |||||||||| | |||||||||||||||||||||||| |||
Sbjct 1845 GGAAGCCTAAACGCATTAGGAACAGAAAATGAATCAGTTGAGAGCAATTCTAATCTCCAA 1904
Query 1883 GAAGAATCAAACGGTGAGATTATTAAACCTTGTGAAGCTAAGGAGAATAGAGAACAGCCT 1942
|||| ||||||| |||||||| |||||||||||||||||||||||||||| |||| ||||
Sbjct 1905 GAAGTATCAAACTGTGAGATTGTTAAACCTTGTGAAGCTAAGGAGAATAGGGAACTGCCT 1964
Query 1943 GCAAAGAAGAGCTTTACAGAAGAGGAAGCTGCTAGAATTATCCAATCTATGTACCGTGGA 2002
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1965 GCAAAGAAGACCTTTACAGAAGAGGAAGCTGCTAGAATTATCCAATCTATGTACCGCGGA 2024
Query 2003 TATGACGTGAGAAGATGGGAGCCAATTAAGAAATTGAAGGAGATAGCCACTGTCCGTGAG 2062
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2025 TATGACGTGAGAAGATGGGAGCCAATTAAGAAATTGAAGGAGATAGCCACTATCCGTGAG 2084
Query 2063 CAGATGGGAGATGTTAAAAAGCGTATTGAGGCGCTAGAAGCTTCTACTGATCAGCACATT 2122
|||||||| |||||||||| ||||||||||||| |||||| || || |||||||||||||
Sbjct 2085 CAGATGGGCGATGTTAAAAGGCGTATTGAGGCGTTAGAAGTTTTTAATGATCAGCACATT 2144
Query 2123 GAAGAGAAGGAGATTGTTGTTAATGGAGAACTGGTGATGAACCTTCTTTTGAAATTGGAT 2182
||||||||||||||| | |||||||||||| |||||||||||||||| || |||||||||
Sbjct 2145 GAAGAGAAGGAGATTATAGTTAATGGAGAAATGGTGATGAACCTTCTATTAAAATTGGAT 2204
Query 2183 GCTGTCGAGGGATTGCATCCTAGTATAAGAGAGTTCAGGAAAGCTTTGGCCACAGAGCTC 2242
||||||||||| |||||||||||||||||||| ||||||||| ||||||||| |||||||
Sbjct 2205 GCTGTCGAGGGCTTGCATCCTAGTATAAGAGACTTCAGGAAATCTTTGGCCAGAGAGCTC 2264
Query 2243 TCAAG-CATTCAAGACAAGCTTGACTCCTTGAAAAATAGTTGCGCCAGTG-CAGAGAAAG 2300
|| || ||||||||||||||||||||||||||||||||| |||||||||| || ||||||
Sbjct 2265 TC-AGACATTCAAGACAAGCTTGACTCCTTGAAAAATAGCTGCGCCAGTGCCA-AGAAAG 2322
Query 2301 AGGCTGTAAAGGAACAAGTGGAAATTAAATCTCAGCCTAGTGACTCTCCAGTGAACTTGG 2360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2323 AGGCTGTAAAGGAACAAGTGGAAATTAAATCTCAGCCCAGTGACTCTCCAGTGAACTTGG 2382
Query 2361 AGCACTCCCAGCTCACAGAAGAGAACAAAATGGTATCTGACACGAATTTAGAGAAGGTAC 2420
|||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |
Sbjct 2383 AGCACTCCCAGCTCGCAGAAGAGAACAAAATGGTATCTGACTCGAATCTAGAGAAGGTTC 2442
Query 2421 TTCGT-CTGTCTCCCGAGGAACATCCTATGAGCGTCTTGAATAGAACAGATGAAAAACAG 2479
||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2443 TTC-TCCTGTCTCCCGAGGAACATCCTATGAGCGTCTTGAGTAGAACAGATGAAAAACAG 2501
Query 2480 GCTGAATCGGCTGCTGAAACAGAAGAGGGATATGGATTGTTTGAAACCCTGGCAACGGAT 2539
|||||| ||||||||||| ||||| |||||| |||||||||||||||| |||||||||||
Sbjct 2502 GCTGAACCGGCTGCTGAAGCAGAAAAGGGATCTGGATTGTTTGAAACCTTGGCAACGGAT 2561
Query 2540 TCTAAGCAAGCTACTGAAAATGCAGCGGCTGCTTCCTCGACAACAATTCCAGAGAAAATT 2599
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2562 TCCGAGCAAGCTACTGAAAATGCAGCGGCTGCTTCCTCGACAACCATTCCAGAGAAAATT 2621
Query 2600 GGAGAGGTTGAGACTGTTGTTCCGGGTAATCCACCGTCAGCTGATGGAAACGG-AATGAC 2658
||||||||||||||||||||||| ||| | ||||||||||||||||||| || || |||
Sbjct 2622 GGAGAGGTTGAGACTGTTGTTCCATGTAGTTCACCGTCAGCTGATGGAAATGGTAA-GAC 2680
Query 2659 AGTGACCAACGTAGAGGAAAACAAAGCCATGGTGGTGGAAAGTTTGGAGGAGCCAATAAA 2718
||||||||| || ||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 2681 AGTGACCAATGTCGAGGAAAACAAAGCC---CTGGTGGAAAGTTTGGAGGAGCCAATAGA 2737
Query 2719 CGAATTGCCGCAAATGGTGGAAGAGACTGAAACAAACTCCATACGGGA-CCCGGAGAATG 2777
|| ||| |||||| ||||||||||||||||||||||||| | |||||| || | | ||||
Sbjct 2738 CGGATTACCGCAAGTGGTGGAAGAGACTGAAACAAACTCTACACGGGAGCCAGTA-AATG 2796
Query 2778 CTAGTGAAGTCTCTGAAGCCGAAACCAACTCATCAGAAAATGAAAACCGAAAAGGAGAAG 2837
|||||||||||| ||||||||| ||||| ||||||| |||||| |||||||||||||||
Sbjct 2797 CTAGTGAAGTCTTTGAAGCCGAGGCCAACGCATCAGAGAATGAAGACCGAAAAGGAGAAG 2856
Query 2838 ATGATATTGTATTGCATTCAGaaaaaaaTGTCGAGCTCTCAGAGCTACCTGTTGGAGTGA 2897
|||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 2857 ATGATACTGTATTGCATTCAGAGAAAGATGTCGAGCTCTCAGAGCTACCTGTTGGAGTGA 2916
Query 2898 TTGACGAGGAAACACAGCCTCTTTCGCAAGATCCATCGTCATCATATACTCGTGAAGGGA 2957
|||| ||||||||| |||||||||| |||||| |||| |||||||||| |||||||||||
Sbjct 2917 TTGATGAGGAAACAGAGCCTCTTTCACAAGATTCATCATCATCATATATTCGTGAAGGGA 2976
Query 2958 ATATGACTGCAATGGACCCTAAAACAGCGAGCCAGGAGGAAACAGAAGTTGATCACTCAC 3017
| |||||||||||||||||||||||||||||||| ||||||| |||||||| ||||| |
Sbjct 2977 AGATGACTGCAATGGACCCTAAAACAGCGAGCCATGAGGAAATTGAAGTTGACCACTCGC 3036
Query 3018 CCAACAACTCCAAAGGCATTGGCCAACAGACTTCTGAGCCACAAGATGAAAAAGAACAGT 3077
|| | ||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 3037 CCGATAACTCCAAAGGCATTGGCCAAGAAACTTCTGAGCCACAAGATGAAAAAGAACAGT 3096
Query 3078 CTCCAGAGACCGAAGTCATTGTGAAAGAACAGCCTCTAGAGACAGAAGTTATTTTGAACG 3137
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3097 CTCCAGAGACAGAAGTCATTGTGAAAGAACAGCCTCTAGAGCCAGAAGTTATTTTGAACG 3156
Query 3138 AACAGGCTCCGGAACCGGAAATCACTGAACCTGGGATATCAAAAGAAACCAAAAAGCTGA 3197
||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 3157 AACAGCCTCCGGAACCAGAAATCACTGAACCTGAGATATCAAAAGAAACCAAAAAGCTGA 3216
Query 3198 TGGAGGAGAACCAGCGATTCAAGGAAACGATGGAGACGTTGGTTAAGGCAGGCAGAGAAC 3257
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3217 TGGAGGAGAACCAGCGATTCAAGGAAACGATGGAGACGTTGGTTAAGGCAGGCCGAGAAC 3276
Query 3258 AACTAGAAGTCATATCGAAATTAACCAGTCGGGTCAAAAGCCTTGAGAAGAAACTGTCAC 3317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3277 AACTAGAAGTCATATCGAAATTAACCAGTCGGGTCAAAAGCCTTGAGAAGAAACTGTCAC 3336
Query 3318 ATAAGAAAAAGACACAGATCAGACGTCGTGCAAGCAAACCAATGTCCGTAAGTCCAACCG 3377
||||||| ||||||||||||||||||||||||||||||| |||||||| |||||| |||
Sbjct 3337 ATAAGAAGAAGACACAGATCAGACGTCGTGCAAGCAAACTAATGTCCGCAAGTCCGACCA 3396
Query 3378 ATGCCGTATTATGACCCCCATAAACATTGATATGTCTCAATTCCTCATATATTGTATCCA 3437
|||||||| | | || |||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 3397 ATGCCGTACTGTAACACCCAGAAAAATTGATATGTCTCAATTCCTCATATATTGTATCCA 3456
Query 3438 TCTCCATCCTAT 3449
||||| ||||||
Sbjct 3457 TCTCCTTCCTAT 3468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132592584332
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5