BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G46250.1

Length=1748
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg952054 jgi|Araly1|952054|scaffold_34700001.1                      737    0.0  


> Ahg952054 jgi|Araly1|952054|scaffold_34700001.1
Length=478

 Score =  737 bits (399),  Expect = 0.0
 Identities = 442/462 (96%), Gaps = 6/462 (1%)
 Strand=Plus/Plus

Query  1165  TGTGGAGTGACCAGAGATTACAAATGAAGCTAGAGGAAGATGATAAAACATTTCTTCTGC  1224
             |||||| ||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct  1     TGTGGAATGACCAGAGATTACAAATGAAGCTAGAGGAAGATGATAAAACA-TT-TT-TGC  57

Query  1225  GAGCTAAGGAGAAGAGTAGATCACAGTCAAGTAAAGGAAGTGGCTTGAGAGCAAAACCAG  1284
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  58    GAGCTAAGGAGAAGAGTAGATCACAGTCAAGTAAAGGAAGTGGCTTGAGAGCAAAACCAG  117

Query  1285  ATGATTCGGTATCTATGCATCAAAGGGTTTGCCTGAAGGAACTCGAAGAAGGGCTTGAAA  1344
             |||||||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct  118   ATGATTCGGTTTCTATGCATCAGAGGGTTTGCTTGAAGGAACTTGAAGAAGGGCTTGAAA  177

Query  1345  AGCGAACAAGAAGAGATAACAAACTGCAGCTT---AAGAAGAGCTCAGGCCAAGTTCTTA  1401
             ||||||||||||||||||||||| ||||||||   ||||||||||||||||||||| |||
Sbjct  178   AGCGAACAAGAAGAGATAACAAATTGCAGCTTAAGAAGAAGAGCTCAGGCCAAGTTTTTA  237

Query  1402  ATCTATCTATGTCTTCGGAAGGAGATAAGATTCATCCAGAGAGTAGTCCAAGGAACGTTG  1461
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238   ATCTATCTATGTCTTCGGAAGGAGATAAGATTCATCCAGAGAGTAGTCCAAGGAACGTTG  297

Query  1462  ATGATCATGAGAGTCAAGAAAAGTCTAGAACTTTCTCGAAGAATCATCCGAGAAATGTGA  1521
             |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct  298   ATGATCATGAGAGTCAAGAAAAGTCTAGAACTTTCTCGAAGATTCTTCCGAGAAATGTGA  357

Query  1522  ATGTGATGATCAGGGAAGATAATCATCGTACTCTCAAGGATAAGCTGATGGAAGCTCGTG  1581
             ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct  358   ATGTGATGATCAGAGAGGATAATCATCGTACTCTCAAGGATAAGCTGATGGAAGCTCGTG  417

Query  1582  TAGAAAGTCGACGTTTACGTTCTTCTTTGAAACCAGAGTGAT  1623
             | || |||||||||||||||||||||| ||||||||||||||
Sbjct  418   TCGAGAGTCGACGTTTACGTTCTTCTTCGAAACCAGAGTGAT  459



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 65591401890


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5