BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G46280.1 Length=1360 Score E Sequences producing significant alignments: (Bits) Value Ahg935594 jgi|Araly1|935594|scaffold_403582.1 1698 0.0 Ahg322284 jgi|Araly1|322284|fgenesh1_pm.C_scaffold_4002341 1406 0.0 Ahg497405 jgi|Araly1|497405|fgenesh2_kg.355__1__AT2G46280.2 1404 0.0 > Ahg935594 jgi|Araly1|935594|scaffold_403582.1 Length=1119 Score = 1698 bits (919), Expect = 0.0 Identities = 1054/1120 (94%), Gaps = 5/1120 (0%) Strand=Plus/Plus Query 124 CAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGGACATGAACGTCCATTGA 183 ||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 CAAACCCTAGGAAATTGAAGATGAGGCCGATCTTGATGAAGGGACATGAACGTCCATTGA 60 Query 184 CGTTTCTGAGGTACAACAGAGAAGGAGATCTGCTTTTCTCCTGCGCCAAGGACCACACAC 243 |||| || |||||||||| ||| || ||||| |||||||| ||||||||||| ||||| | Sbjct 61 CGTTCCTCAGGTACAACAAAGATGGCGATCTACTTTTCTCTTGCGCCAAGGATCACACTC 120 Query 244 CCACCCTCTGGTTTGCCGATAACGGCGAGCGCCTTGGAACTTACCGTGGTCACAACGGTG 303 ||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| Sbjct 121 CCACCCTCTGGTTTGCCGATAACGGCGAGCGCCTTGGCACATACCGTGGCCACAACGGTG 180 Query 304 CTGTTTGGTGCTGTGATGTCTCCCGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATC 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CTGTTTGGTGCTGTGATGTCTCCCGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATC 240 Query 364 AGACTGCAAAGCTGTGGGATGTAAAATCTGGAAAAGAATTGTTCACTTTCAAGTTTAATG 423 ||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||| | Sbjct 241 AGACTGCAAAGCTCTGGGATGTGAAATCTGGAAAAGAATTGTTCACATTCAAGTTTGGTT 300 Query 424 CCCCTACGAGGTCTGTGGATTTCGCTGTTGGAGATCGTCTTGCAGTGATTACCACTGATC 483 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 301 CCCCTACGAGGTCTGTGGATTTCGCTGTTGGAGATCATCTTGCAGTGATTACCACTGATT 360 Query 484 ACTTCGTGGACCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC 543 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| || | Sbjct 361 ACTTCGTGGACCGTATGGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAAGACC 420 Query 544 AGGAT-GCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGATCAATAGA 602 ||| | | ||| ||||||||||||||||| || ||||| ||||||||||||||||||||| Sbjct 421 AGGTTAG-TGATTCTGTGCTTGTCCTTCAATGCCCTGACGGAAAGAAGAGGATCAATAGA 479 Query 603 GCTGTTTGGGGTCCCCTGAACCAAACTATTGTTAGTGGTGGTGAAGATAAAGTTATCAGA 662 |||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| Sbjct 480 GCTGTTTGGGGTCCCCTGAATCAAACTATTGTTAGTGCTGGTGAAGATACTGTTATCAGA 539 Query 663 ATCTGGGATGCCGAGACGGGAAAATTGCTCAA-GCAATCAGATGAGGAAGTGGGTCACAA 721 ||||||||| | ||||| |||||||||||||| | || || ||||||||||||||||||| Sbjct 540 ATCTGGGATACGGAGACTGGAAAATTGCTCAATG-AAACAAATGAGGAAGTGGGTCACAA 598 Query 722 GAAGGACATTACATCGCTCTGCAAAGCAGCTGATGACTCTCACTTCCTTACAGGTTCACT 781 ||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 599 GAAGGCCATTACATCGCTCTGTAAAGCAGCTGATGATTCTCACTTCCTTACAGGTTCACA 658 Query 782 TGACAAAACTGCAAAGCTTTGGGACATGAGAACGCTGACTCTTCTTAAGACTTACACCAC 841 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 659 TGACAAAACTGCAAAGCTTTGGGACATGAGAACGCTGACTCTTATTAAGACTTACACCAC 718 Query 842 TGTGGTGCCCGTAAATGCTGTCTCCCTGTCTCCACTTCTCAACCATGTTGTACTTGGAGG 901 || ||||||||||||||||||| || ||||||| ||||||||||||||||| |||||||| Sbjct 719 TGGGGTGCCCGTAAATGCTGTCGCCATGTCTCCCCTTCTCAACCATGTTGTCCTTGGAGG 778 Query 902 TGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGAAAGTTTGAAGCTAA 961 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 TGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGAAAGTTTGAAGCTAA 838 Query 962 GTTTTACGACAAGATTCTGCAAGAGGAAATTGGTGGTGTGAAAGGTCATTTTGGACCTAT 1021 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 GTTTTATGACAAGATTCTGCAAGAGGAAATTGGTGGTGTGAAAGGTCATTTTGGACCTAT 898 Query 1022 AAATGCTTTGGCATTCAATCCTGATGGGAAGAGTTTCTCTAGTGGAGGTGAAGACGGTTA 1081 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 899 AAATGCTTTGGCATTCAATCCTGATGGGAAGAGTTTCTCCAGTGGAGGTGAAGACGGTTA 958 Query 1082 CGTGAGGCTGCATCATTTTGACTCCGACTACTTCAACATCAAGATTTAGATTCCGACTAC 1141 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 CGTGAGGCTGCATCATTTTGACTCCGACTACTTCAACATCAAGATTTAGATTCCGACTAC 1018 Query 1142 TTGAACGTCAACC-TTTTAGAATCTTTGAAAAAGTCTCCCATTCCGGAttttgttttctc 1200 || ||| |||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1019 TTCAACATCAAAGATTTTAGATTCTTTGAAAAAGTCTCCCATTCCGGATTTTGTTTTCTC 1078 Query 1201 tctcttttaacattttcatgtttttatttACTACCAATAC 1240 || ||||||||||||||||||||||| |||||||||||| Sbjct 1079 GCTTTTTTAACATTTTCATGTTTTTATGTACTACCAATAC 1118 > Ahg322284 jgi|Araly1|322284|fgenesh1_pm.C_scaffold_4002341 Length=1080 Score = 1406 bits (761), Expect = 0.0 Identities = 937/1022 (92%), Gaps = 12/1022 (1%) Strand=Plus/Plus Query 117 TTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGGACATGAACGT 176 ||||||||||||||| |||||| || ||||||||||||| ||||||||||||| |||||| Sbjct 63 TTCGCATCAAACCCT-AGAAAC-GAGGATGAGGCCGATCTTGATGAAGGGACACGAACGT 120 Query 177 CCATTGACGTTTCTGAGGTACAACAGAGAAGGAGATCTGCTTTTCTCCTGCGCCAAGGAC 236 |||||||| || || |||||||||||||| || ||||||||||||||||||||||||||| Sbjct 121 CCATTGACATTCCTCAGGTACAACAGAGATGGCGATCTGCTTTTCTCCTGCGCCAAGGAC 180 Query 237 CACACACCCACCCTCTGGTTTGCCGATAACGGCGAGCGCCTTGGAACTTACCGTGGTCAC 296 ||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| Sbjct 181 CACACTCCCACCCTCTGGCTTGCCCATAACGGCGAGCGCCTTGGAACTTACCGTGGCCAC 240 Query 297 AACGGTGCTGTTTGGTGCTGTGATGTCTCCCGAGACTCGTCAAGATTGATCACTGGTAGT 356 || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AATGGTGCTGTTTCGTGCTGTGATGTCTCCCGAGACTCGTCAAGATTGATCACTGGTAGT 300 Query 357 GCTGATCAGACTGCAAAGCTGTGGGATGTAAAATCTGGAAAAGAATTGTTCACTTTCAAG 416 |||||||||||||||||||| ||||||||||||||||||||| |||| ||||| ||||| Sbjct 301 GCTGATCAGACTGCAAAGCTCTGGGATGTAAAATCTGGAAAACAATTATTCACATTCAAT 360 Query 417 TTTAATGCCCCTACGAGGTCTGTGGATTTCGCTGTTGGAGATCGTCTTGCAGTGATTACC 476 ||| | | | ||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 361 TTTGGTTCTTCGGCGAGGTCTGTGGATTTCTCTGTTGGAGATCATCTTGCAGTGATTACC 420 Query 477 ACTGATCACTTCGTGG-ACCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCC 535 |||||||||||| ||| | | || |||||||||||||||| || |||||||||||||| Sbjct 421 ACTGATCACTTCATGGGAGTTT-CCTCTGCTATTCATGTGAAACGCATTGCGGAAGATCC 479 Query 536 TGAGGAACAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGAT 595 | || |||| || ||| ||||||||||||||||| ||||||| |||||||||| ||| Sbjct 480 CCAAGACCAGGTTGGTGATTCTGTGCTTGTCCTTCAAAGTCCTGACGGAAAGAAGAAGAT 539 Query 596 CAATAGAGCTGTTTGGGGTCCCCTGAACCAAACTATTGTTAGTGGTGGTGAAGATAAAGT 655 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 540 CAATAGAGCTGTTTGGGGTCCTCTGAACCAAACTATTGTTAGTGGTGGTGAAGATACTGT 599 Query 656 TATCAGAATCTGGGATGCCGAGACGGGAAAATTGCTCAAGCAATCAGATGAGGAAGTGGG 715 |||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 600 TATCAGAATCTGGGATACCGAGACTGGAAAATTGCTCAAGCAATCAGATGTGGAAGTGGG 659 Query 716 TCACAAGAAGGACATTACATCGCTCTGCAAAGCAGCTGATGACTCTCACTTCCTTACAGG 775 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TCACAAGGAGGCCATTACATCGCTCTGCAAAGCAGCTGATGACTCTCACTTCCTTACAGG 719 Query 776 TTCACTTGACAAAACTGCAAAG-C-T-T-T--GGGACATGAGAACGCTGACTCTTCTTAA 829 ||||| |||||||||||||||| | | | | |||| |||||| ||||||||||| |||| Sbjct 720 TTCACATGACAAAACTGCAAAGGCATGTCTTTGGGATATGAGATCGCTGACTCTTATTAA 779 Query 830 GACTTACACCACTGTGGTGCCCGTAAATGCTGTCTCCC-TGTCTCCACTTCTCAACCATG 888 || ||| || || |||||||| ||||||||||| | || ||||||||||||||||||||| Sbjct 780 GAGTTATACAACAGTGGTGCCTGTAAATGCTGT-TGCCATGTCTCCACTTCTCAACCATG 838 Query 889 TTGTACTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGAA 948 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 839 TTGTGCTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGGA 898 Query 949 AGTTTGAAGCTAAGTTTTACGACAAGATTCTGCAAGAGGAAATTGGTGGTGTGAAAGGTC 1008 |||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||| Sbjct 899 AGTTTGAAGCTAAGTTTTACGACACGATTCTGGAAGAGGAAATAGGTGGTGTGAAAGGTC 958 Query 1009 ATTTTGGACCTATAAATGCTTTGGCATTCAATCCTGATGGGAAGAGTTTCTCTAGTGGAG 1068 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 959 ATTTTGGACCTATAAATGCGTTGGCATTCAATCCTGATGGGAAGAGTTTCTCTAGTGGAG 1018 Query 1069 GTGAAGACGGTTACGTGAGGCTGCATCATTTTGACTCCGACTACTTCAACATCAAGATTT 1128 |||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 1019 GTGAAGACGGCTACGTGAGGCTGCATCATTTTGACTCCAATTACTTCAACATCAAGATTT 1078 Query 1129 AG 1130 || Sbjct 1079 AG 1080 > Ahg497405 jgi|Araly1|497405|fgenesh2_kg.355__1__AT2G46280.2 Length=988 Score = 1404 bits (760), Expect = 0.0 Identities = 914/990 (92%), Gaps = 4/990 (0%) Strand=Plus/Plus Query 143 GATGAGGCCGATCCTGATGAAGGGACATGAACGTCCATTGACGTTTCTGAGGTACAACAG 202 ||||| ||||||| |||||||||||||||||||||||||||| || || ||||||||||| Sbjct 1 GATGACGCCGATCTTGATGAAGGGACATGAACGTCCATTGACATTCCTCAGGTACAACAG 60 Query 203 AGAAGGAGATCTGCTTTTCTCCTGCGCCAAGGACCACACACCCACCCTCTGGTTTGCCGA 262 ||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||| | Sbjct 61 AGATGGCGATCTGCTTTTCTCCTGCGCCAAGGACCACACTCCCACCCTCTGGCTTGCCCA 120 Query 263 TAACGGCGAGCGCCTTGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGT 322 |||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||| Sbjct 121 TAACGGCGAGCGCCTTGGAACTTACCGTGGCCACAATGGTGCTGTTTCGTGCTGTGATGT 180 Query 323 CTCCCGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGTGGGA 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 181 CTCCCGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTCTGGGA 240 Query 383 TGTAAAATCTGGAAAAGAATTGTTCACTTTCAAGTTTAATGCCCCTACGAGGTCTGTGGA 442 |||||||||||||||| |||| ||||| ||||| ||| | | | ||||||||||||| Sbjct 241 TGTAAAATCTGGAAAACAATTATTCACATTCAATTTTGGTTCTTCGGCGAGGTCTGTGGA 300 Query 443 TTTCGCTGTTGGAGATCGTCTTGCAGTGATTACCACTGATCACTTCGTGG-ACCGTACCG 501 |||| |||||||||||| |||||||||||||||||||||||||||| ||| | | || Sbjct 301 TTTCTCTGTTGGAGATCATCTTGCAGTGATTACCACTGATCACTTCATGGGAGTTT-CCT 359 Query 502 CTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACAGGATGCTGAGTCTGTGC 561 |||||||||||||||| || |||||||||||||| | || |||| || ||| ||||||| Sbjct 360 CTGCTATTCATGTGAAACGCATTGCGGAAGATCCCCAAGACCAGGTTGGTGATTCTGTGC 419 Query 562 TTGTCCTTCATTGTCCTGATGGAAAGAAGAGGATCAATAGAGCTGTTTGGGGTCCCCTGA 621 |||||||||| ||||||| |||||||||| |||||||||||||||||||||||| |||| Sbjct 420 TTGTCCTTCAAAGTCCTGACGGAAAGAAGAAGATCAATAGAGCTGTTTGGGGTCCTCTGA 479 Query 622 ACCAAACTATTGTTAGTGGTGGTGAAGATAAAGTTATCAGAATCTGGGATGCCGAGACGG 681 |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| | Sbjct 480 ACCAAACTATTGTTAGTGGTGGTGAAGATACTGTTATCAGAATCTGGGATACCGAGACTG 539 Query 682 GAAAATTGCTCAAGCAATCAGATGAGGAAGTGGGTCACAAGAAGGACATTACATCGCTCT 741 |||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||| Sbjct 540 GAAAATTGCTCAAGCAATCAGATGTGGAAGTGGGTCACAAGGAGGCCATTACATCGCTCT 599 Query 742 GCAAAGCAGCTGATGACTCTCACTTCCTTACAGGTTCACTTGACAAAACTGCAAAGCTTT 801 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 600 GCAAAGCAGCTGATGACTCTCACTTCCTTACAGGTTCACATGACAAAACTGCAAAGCTTT 659 Query 802 GGGACATGAGAACGCTGACTCTTCTTAAGACTTACACCACTGTGGTGCCCGTAAATGCTG 861 |||| |||||| ||||||||||| |||||| ||| || || |||||||| |||||||||| Sbjct 660 GGGATATGAGATCGCTGACTCTTATTAAGAGTTATACAACAGTGGTGCCTGTAAATGCTG 719 Query 862 TCTCCC-TGTCTCCACTTCTCAACCATGTTGTACTTGGAGGTGGTCAAGATGCATCAGCT 920 | | || ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 720 T-TGCCATGTCTCCACTTCTCAACCATGTTGTGCTTGGAGGTGGTCAAGATGCATCAGCT 778 Query 921 GTGACTACCACTGATCATCGTGCTGGAAAGTTTGAAGCTAAGTTTTACGACAAGATTCTG 980 |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct 779 GTGACTACCACTGATCATCGTGCTGGGAAGTTTGAAGCTAAGTTTTACGACACGATTCTG 838 Query 981 CAAGAGGAAATTGGTGGTGTGAAAGGTCATTTTGGACCTATAAATGCTTTGGCATTCAAT 1040 |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 839 GAAGAGGAAATAGGTGGTGTGAAAGGTCATTTTGGACCTATAAATGCGTTGGCATTCAAT 898 Query 1041 CCTGATGGGAAGAGTTTCTCTAGTGGAGGTGAAGACGGTTACGTGAGGCTGCATCATTTT 1100 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 899 CCTGATGGGAAGAGTTTCTCTAGTGGAGGTGAAGACGGCTACGTGAGGCTGCATCATTTT 958 Query 1101 GACTCCGACTACTTCAACATCAAGATTTAG 1130 |||||| | ||||||||||||||||||||| Sbjct 959 GACTCCAATTACTTCAACATCAAGATTTAG 988 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50894094195 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5