BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46280.1
Length=1360
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935594 jgi|Araly1|935594|scaffold_403582.1 1698 0.0
Ahg322284 jgi|Araly1|322284|fgenesh1_pm.C_scaffold_4002341 1406 0.0
Ahg497405 jgi|Araly1|497405|fgenesh2_kg.355__1__AT2G46280.2 1404 0.0
> Ahg935594 jgi|Araly1|935594|scaffold_403582.1
Length=1119
Score = 1698 bits (919), Expect = 0.0
Identities = 1054/1120 (94%), Gaps = 5/1120 (0%)
Strand=Plus/Plus
Query 124 CAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGGACATGAACGTCCATTGA 183
||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 CAAACCCTAGGAAATTGAAGATGAGGCCGATCTTGATGAAGGGACATGAACGTCCATTGA 60
Query 184 CGTTTCTGAGGTACAACAGAGAAGGAGATCTGCTTTTCTCCTGCGCCAAGGACCACACAC 243
|||| || |||||||||| ||| || ||||| |||||||| ||||||||||| ||||| |
Sbjct 61 CGTTCCTCAGGTACAACAAAGATGGCGATCTACTTTTCTCTTGCGCCAAGGATCACACTC 120
Query 244 CCACCCTCTGGTTTGCCGATAACGGCGAGCGCCTTGGAACTTACCGTGGTCACAACGGTG 303
||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 121 CCACCCTCTGGTTTGCCGATAACGGCGAGCGCCTTGGCACATACCGTGGCCACAACGGTG 180
Query 304 CTGTTTGGTGCTGTGATGTCTCCCGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATC 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTGTTTGGTGCTGTGATGTCTCCCGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATC 240
Query 364 AGACTGCAAAGCTGTGGGATGTAAAATCTGGAAAAGAATTGTTCACTTTCAAGTTTAATG 423
||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||| |
Sbjct 241 AGACTGCAAAGCTCTGGGATGTGAAATCTGGAAAAGAATTGTTCACATTCAAGTTTGGTT 300
Query 424 CCCCTACGAGGTCTGTGGATTTCGCTGTTGGAGATCGTCTTGCAGTGATTACCACTGATC 483
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 CCCCTACGAGGTCTGTGGATTTCGCTGTTGGAGATCATCTTGCAGTGATTACCACTGATT 360
Query 484 ACTTCGTGGACCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC 543
||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 361 ACTTCGTGGACCGTATGGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAAGACC 420
Query 544 AGGAT-GCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGATCAATAGA 602
||| | | ||| ||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 421 AGGTTAG-TGATTCTGTGCTTGTCCTTCAATGCCCTGACGGAAAGAAGAGGATCAATAGA 479
Query 603 GCTGTTTGGGGTCCCCTGAACCAAACTATTGTTAGTGGTGGTGAAGATAAAGTTATCAGA 662
|||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||
Sbjct 480 GCTGTTTGGGGTCCCCTGAATCAAACTATTGTTAGTGCTGGTGAAGATACTGTTATCAGA 539
Query 663 ATCTGGGATGCCGAGACGGGAAAATTGCTCAA-GCAATCAGATGAGGAAGTGGGTCACAA 721
||||||||| | ||||| |||||||||||||| | || || |||||||||||||||||||
Sbjct 540 ATCTGGGATACGGAGACTGGAAAATTGCTCAATG-AAACAAATGAGGAAGTGGGTCACAA 598
Query 722 GAAGGACATTACATCGCTCTGCAAAGCAGCTGATGACTCTCACTTCCTTACAGGTTCACT 781
||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 599 GAAGGCCATTACATCGCTCTGTAAAGCAGCTGATGATTCTCACTTCCTTACAGGTTCACA 658
Query 782 TGACAAAACTGCAAAGCTTTGGGACATGAGAACGCTGACTCTTCTTAAGACTTACACCAC 841
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 659 TGACAAAACTGCAAAGCTTTGGGACATGAGAACGCTGACTCTTATTAAGACTTACACCAC 718
Query 842 TGTGGTGCCCGTAAATGCTGTCTCCCTGTCTCCACTTCTCAACCATGTTGTACTTGGAGG 901
|| ||||||||||||||||||| || ||||||| ||||||||||||||||| ||||||||
Sbjct 719 TGGGGTGCCCGTAAATGCTGTCGCCATGTCTCCCCTTCTCAACCATGTTGTCCTTGGAGG 778
Query 902 TGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGAAAGTTTGAAGCTAA 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGAAAGTTTGAAGCTAA 838
Query 962 GTTTTACGACAAGATTCTGCAAGAGGAAATTGGTGGTGTGAAAGGTCATTTTGGACCTAT 1021
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GTTTTATGACAAGATTCTGCAAGAGGAAATTGGTGGTGTGAAAGGTCATTTTGGACCTAT 898
Query 1022 AAATGCTTTGGCATTCAATCCTGATGGGAAGAGTTTCTCTAGTGGAGGTGAAGACGGTTA 1081
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 899 AAATGCTTTGGCATTCAATCCTGATGGGAAGAGTTTCTCCAGTGGAGGTGAAGACGGTTA 958
Query 1082 CGTGAGGCTGCATCATTTTGACTCCGACTACTTCAACATCAAGATTTAGATTCCGACTAC 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CGTGAGGCTGCATCATTTTGACTCCGACTACTTCAACATCAAGATTTAGATTCCGACTAC 1018
Query 1142 TTGAACGTCAACC-TTTTAGAATCTTTGAAAAAGTCTCCCATTCCGGAttttgttttctc 1200
|| ||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TTCAACATCAAAGATTTTAGATTCTTTGAAAAAGTCTCCCATTCCGGATTTTGTTTTCTC 1078
Query 1201 tctcttttaacattttcatgtttttatttACTACCAATAC 1240
|| ||||||||||||||||||||||| ||||||||||||
Sbjct 1079 GCTTTTTTAACATTTTCATGTTTTTATGTACTACCAATAC 1118
> Ahg322284 jgi|Araly1|322284|fgenesh1_pm.C_scaffold_4002341
Length=1080
Score = 1406 bits (761), Expect = 0.0
Identities = 937/1022 (92%), Gaps = 12/1022 (1%)
Strand=Plus/Plus
Query 117 TTCGCATCAAACCCTAAGAAACTGAAGATGAGGCCGATCCTGATGAAGGGACATGAACGT 176
||||||||||||||| |||||| || ||||||||||||| ||||||||||||| ||||||
Sbjct 63 TTCGCATCAAACCCT-AGAAAC-GAGGATGAGGCCGATCTTGATGAAGGGACACGAACGT 120
Query 177 CCATTGACGTTTCTGAGGTACAACAGAGAAGGAGATCTGCTTTTCTCCTGCGCCAAGGAC 236
|||||||| || || |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 121 CCATTGACATTCCTCAGGTACAACAGAGATGGCGATCTGCTTTTCTCCTGCGCCAAGGAC 180
Query 237 CACACACCCACCCTCTGGTTTGCCGATAACGGCGAGCGCCTTGGAACTTACCGTGGTCAC 296
||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| |||
Sbjct 181 CACACTCCCACCCTCTGGCTTGCCCATAACGGCGAGCGCCTTGGAACTTACCGTGGCCAC 240
Query 297 AACGGTGCTGTTTGGTGCTGTGATGTCTCCCGAGACTCGTCAAGATTGATCACTGGTAGT 356
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AATGGTGCTGTTTCGTGCTGTGATGTCTCCCGAGACTCGTCAAGATTGATCACTGGTAGT 300
Query 357 GCTGATCAGACTGCAAAGCTGTGGGATGTAAAATCTGGAAAAGAATTGTTCACTTTCAAG 416
|||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |||||
Sbjct 301 GCTGATCAGACTGCAAAGCTCTGGGATGTAAAATCTGGAAAACAATTATTCACATTCAAT 360
Query 417 TTTAATGCCCCTACGAGGTCTGTGGATTTCGCTGTTGGAGATCGTCTTGCAGTGATTACC 476
||| | | | ||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 361 TTTGGTTCTTCGGCGAGGTCTGTGGATTTCTCTGTTGGAGATCATCTTGCAGTGATTACC 420
Query 477 ACTGATCACTTCGTGG-ACCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCC 535
|||||||||||| ||| | | || |||||||||||||||| || ||||||||||||||
Sbjct 421 ACTGATCACTTCATGGGAGTTT-CCTCTGCTATTCATGTGAAACGCATTGCGGAAGATCC 479
Query 536 TGAGGAACAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGAT 595
| || |||| || ||| ||||||||||||||||| ||||||| |||||||||| |||
Sbjct 480 CCAAGACCAGGTTGGTGATTCTGTGCTTGTCCTTCAAAGTCCTGACGGAAAGAAGAAGAT 539
Query 596 CAATAGAGCTGTTTGGGGTCCCCTGAACCAAACTATTGTTAGTGGTGGTGAAGATAAAGT 655
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 540 CAATAGAGCTGTTTGGGGTCCTCTGAACCAAACTATTGTTAGTGGTGGTGAAGATACTGT 599
Query 656 TATCAGAATCTGGGATGCCGAGACGGGAAAATTGCTCAAGCAATCAGATGAGGAAGTGGG 715
|||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 600 TATCAGAATCTGGGATACCGAGACTGGAAAATTGCTCAAGCAATCAGATGTGGAAGTGGG 659
Query 716 TCACAAGAAGGACATTACATCGCTCTGCAAAGCAGCTGATGACTCTCACTTCCTTACAGG 775
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCACAAGGAGGCCATTACATCGCTCTGCAAAGCAGCTGATGACTCTCACTTCCTTACAGG 719
Query 776 TTCACTTGACAAAACTGCAAAG-C-T-T-T--GGGACATGAGAACGCTGACTCTTCTTAA 829
||||| |||||||||||||||| | | | | |||| |||||| ||||||||||| ||||
Sbjct 720 TTCACATGACAAAACTGCAAAGGCATGTCTTTGGGATATGAGATCGCTGACTCTTATTAA 779
Query 830 GACTTACACCACTGTGGTGCCCGTAAATGCTGTCTCCC-TGTCTCCACTTCTCAACCATG 888
|| ||| || || |||||||| ||||||||||| | || |||||||||||||||||||||
Sbjct 780 GAGTTATACAACAGTGGTGCCTGTAAATGCTGT-TGCCATGTCTCCACTTCTCAACCATG 838
Query 889 TTGTACTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGAA 948
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 839 TTGTGCTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGGA 898
Query 949 AGTTTGAAGCTAAGTTTTACGACAAGATTCTGCAAGAGGAAATTGGTGGTGTGAAAGGTC 1008
|||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||
Sbjct 899 AGTTTGAAGCTAAGTTTTACGACACGATTCTGGAAGAGGAAATAGGTGGTGTGAAAGGTC 958
Query 1009 ATTTTGGACCTATAAATGCTTTGGCATTCAATCCTGATGGGAAGAGTTTCTCTAGTGGAG 1068
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATTTTGGACCTATAAATGCGTTGGCATTCAATCCTGATGGGAAGAGTTTCTCTAGTGGAG 1018
Query 1069 GTGAAGACGGTTACGTGAGGCTGCATCATTTTGACTCCGACTACTTCAACATCAAGATTT 1128
|||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1019 GTGAAGACGGCTACGTGAGGCTGCATCATTTTGACTCCAATTACTTCAACATCAAGATTT 1078
Query 1129 AG 1130
||
Sbjct 1079 AG 1080
> Ahg497405 jgi|Araly1|497405|fgenesh2_kg.355__1__AT2G46280.2
Length=988
Score = 1404 bits (760), Expect = 0.0
Identities = 914/990 (92%), Gaps = 4/990 (0%)
Strand=Plus/Plus
Query 143 GATGAGGCCGATCCTGATGAAGGGACATGAACGTCCATTGACGTTTCTGAGGTACAACAG 202
||||| ||||||| |||||||||||||||||||||||||||| || || |||||||||||
Sbjct 1 GATGACGCCGATCTTGATGAAGGGACATGAACGTCCATTGACATTCCTCAGGTACAACAG 60
Query 203 AGAAGGAGATCTGCTTTTCTCCTGCGCCAAGGACCACACACCCACCCTCTGGTTTGCCGA 262
||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct 61 AGATGGCGATCTGCTTTTCTCCTGCGCCAAGGACCACACTCCCACCCTCTGGCTTGCCCA 120
Query 263 TAACGGCGAGCGCCTTGGAACTTACCGTGGTCACAACGGTGCTGTTTGGTGCTGTGATGT 322
|||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||
Sbjct 121 TAACGGCGAGCGCCTTGGAACTTACCGTGGCCACAATGGTGCTGTTTCGTGCTGTGATGT 180
Query 323 CTCCCGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGTGGGA 382
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 CTCCCGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTCTGGGA 240
Query 383 TGTAAAATCTGGAAAAGAATTGTTCACTTTCAAGTTTAATGCCCCTACGAGGTCTGTGGA 442
|||||||||||||||| |||| ||||| ||||| ||| | | | |||||||||||||
Sbjct 241 TGTAAAATCTGGAAAACAATTATTCACATTCAATTTTGGTTCTTCGGCGAGGTCTGTGGA 300
Query 443 TTTCGCTGTTGGAGATCGTCTTGCAGTGATTACCACTGATCACTTCGTGG-ACCGTACCG 501
|||| |||||||||||| |||||||||||||||||||||||||||| ||| | | ||
Sbjct 301 TTTCTCTGTTGGAGATCATCTTGCAGTGATTACCACTGATCACTTCATGGGAGTTT-CCT 359
Query 502 CTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACAGGATGCTGAGTCTGTGC 561
|||||||||||||||| || |||||||||||||| | || |||| || ||| |||||||
Sbjct 360 CTGCTATTCATGTGAAACGCATTGCGGAAGATCCCCAAGACCAGGTTGGTGATTCTGTGC 419
Query 562 TTGTCCTTCATTGTCCTGATGGAAAGAAGAGGATCAATAGAGCTGTTTGGGGTCCCCTGA 621
|||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||
Sbjct 420 TTGTCCTTCAAAGTCCTGACGGAAAGAAGAAGATCAATAGAGCTGTTTGGGGTCCTCTGA 479
Query 622 ACCAAACTATTGTTAGTGGTGGTGAAGATAAAGTTATCAGAATCTGGGATGCCGAGACGG 681
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
Sbjct 480 ACCAAACTATTGTTAGTGGTGGTGAAGATACTGTTATCAGAATCTGGGATACCGAGACTG 539
Query 682 GAAAATTGCTCAAGCAATCAGATGAGGAAGTGGGTCACAAGAAGGACATTACATCGCTCT 741
|||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||
Sbjct 540 GAAAATTGCTCAAGCAATCAGATGTGGAAGTGGGTCACAAGGAGGCCATTACATCGCTCT 599
Query 742 GCAAAGCAGCTGATGACTCTCACTTCCTTACAGGTTCACTTGACAAAACTGCAAAGCTTT 801
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 GCAAAGCAGCTGATGACTCTCACTTCCTTACAGGTTCACATGACAAAACTGCAAAGCTTT 659
Query 802 GGGACATGAGAACGCTGACTCTTCTTAAGACTTACACCACTGTGGTGCCCGTAAATGCTG 861
|||| |||||| ||||||||||| |||||| ||| || || |||||||| ||||||||||
Sbjct 660 GGGATATGAGATCGCTGACTCTTATTAAGAGTTATACAACAGTGGTGCCTGTAAATGCTG 719
Query 862 TCTCCC-TGTCTCCACTTCTCAACCATGTTGTACTTGGAGGTGGTCAAGATGCATCAGCT 920
| | || ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 720 T-TGCCATGTCTCCACTTCTCAACCATGTTGTGCTTGGAGGTGGTCAAGATGCATCAGCT 778
Query 921 GTGACTACCACTGATCATCGTGCTGGAAAGTTTGAAGCTAAGTTTTACGACAAGATTCTG 980
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 779 GTGACTACCACTGATCATCGTGCTGGGAAGTTTGAAGCTAAGTTTTACGACACGATTCTG 838
Query 981 CAAGAGGAAATTGGTGGTGTGAAAGGTCATTTTGGACCTATAAATGCTTTGGCATTCAAT 1040
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 839 GAAGAGGAAATAGGTGGTGTGAAAGGTCATTTTGGACCTATAAATGCGTTGGCATTCAAT 898
Query 1041 CCTGATGGGAAGAGTTTCTCTAGTGGAGGTGAAGACGGTTACGTGAGGCTGCATCATTTT 1100
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 899 CCTGATGGGAAGAGTTTCTCTAGTGGAGGTGAAGACGGCTACGTGAGGCTGCATCATTTT 958
Query 1101 GACTCCGACTACTTCAACATCAAGATTTAG 1130
|||||| | |||||||||||||||||||||
Sbjct 959 GACTCCAATTACTTCAACATCAAGATTTAG 988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50894094195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5