BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46290.1
Length=1289
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322284 jgi|Araly1|322284|fgenesh1_pm.C_scaffold_4002341 1535 0.0
Ahg497405 jgi|Araly1|497405|fgenesh2_kg.355__1__AT2G46280.2 1487 0.0
Ahg935594 jgi|Araly1|935594|scaffold_403582.1 1428 0.0
> Ahg322284 jgi|Araly1|322284|fgenesh1_pm.C_scaffold_4002341
Length=1080
Score = 1535 bits (831), Expect = 0.0
Identities = 999/1080 (93%), Gaps = 12/1080 (1%)
Strand=Plus/Plus
Query 83 ATGACAATTGAGTGCGTTAATCCCGAAGGTCTTCGATT-CA--A---CCAAATGAAAAGC 136
|||||||| || | |||||||||||||||||||||||| | | ||||||| ||||
Sbjct 1 ATGACAATGGATTACGTTAATCCCGAAGGTCTTCGATTAGATGATCGCCAAATGCGAAGC 60
Query 137 TCCTCTCATCAAACCCTAGAAACGAGGATGAGGCCGATTTTGATGAAGGGACATGAACGT 196
|| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 61 TCTTCGCATCAAACCCTAGAAACGAGGATGAGGCCGATCTTGATGAAGGGACACGAACGT 120
Query 197 CCATTGACGTTCCTGAGGTACAACAGAAATGGTGATCTGCTTTTCTCCTGCGCCAAAGAC 256
|||||||| ||||| |||||||||||| |||| ||||||||||||||||||||||| |||
Sbjct 121 CCATTGACATTCCTCAGGTACAACAGAGATGGCGATCTGCTTTTCTCCTGCGCCAAGGAC 180
Query 257 CACACTCCCACAGTCTGGTTTGCCGATAACGGCGAGCGTCTTGGCACTTACCGTGGCCAC 316
||||||||||| ||||| ||||| ||||||||||||| ||||| |||||||||||||||
Sbjct 181 CACACTCCCACCCTCTGGCTTGCCCATAACGGCGAGCGCCTTGGAACTTACCGTGGCCAC 240
Query 317 AGTGGTGCTGTTTGGTGCTGTGATATCTCCAGAGACTCGTCTAGATTGATCACTGGTAGT 376
| ||||||||||| |||||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct 241 AATGGTGCTGTTTCGTGCTGTGATGTCTCCCGAGACTCGTCAAGATTGATCACTGGTAGT 300
Query 377 GCTGATCAGACTGCAAAGCTGTGGGATGTGAAATCTGGCAAAGAATTGTTCACTTTCAAG 436
|||||||||||||||||||| |||||||| |||||||| ||| |||| ||||| |||||
Sbjct 301 GCTGATCAGACTGCAAAGCTCTGGGATGTAAAATCTGGAAAACAATTATTCACATTCAAT 360
Query 437 TTTGGTGCCCCTGCAAGGTCTGTGGATTTCTCTGTTGGTGATCATCTTGCAGTGATTACC 496
|||||| | | || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 TTTGGTTCTTCGGCGAGGTCTGTGGATTTCTCTGTTGGAGATCATCTTGCAGTGATTACC 420
Query 497 ACTGATCACTTCGTGGGAACTTCCTCTGCTATTCATGTCAAACGCATTGCAGAAGATCCC 556
|||||||||||| ||||| |||||||||||||||||| ||||||||||| |||||||||
Sbjct 421 ACTGATCACTTCATGGGAGTTTCCTCTGCTATTCATGTGAAACGCATTGCGGAAGATCCC 480
Query 557 GAAGACCAGGTTGGTGATTCTGTGCTTGTCCTTCAAAGTCCTGATGGAAAGAAGAAGATC 616
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 CAAGACCAGGTTGGTGATTCTGTGCTTGTCCTTCAAAGTCCTGACGGAAAGAAGAAGATC 540
Query 617 AATAGAGCTGTTTGGGGTCCCCTGAACCAAACCATTGTTAGTGGTGGTGAAGATGCTGCT 676
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||| |
Sbjct 541 AATAGAGCTGTTTGGGGTCCTCTGAACCAAACTATTGTTAGTGGTGGTGAAGATACTGTT 600
Query 677 ATCAGAATCTGGGATGCAGAGACTGGAAAATTGCTTAAGCAATCAGATGAGGAAGTGGGT 736
||||||||||||||| | ||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 601 ATCAGAATCTGGGATACCGAGACTGGAAAATTGCTCAAGCAATCAGATGTGGAAGTGGGT 660
Query 737 CACAAGGAGGCCATTACATCCCTCTGCAAAGCAGCTGATGACTCTCACTTCCTTACAGGT 796
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 661 CACAAGGAGGCCATTACATCGCTCTGCAAAGCAGCTGATGACTCTCACTTCCTTACAGGT 720
Query 797 TCACATGACAAAACTGC-AA---A-G-CTTTGGGACATGAGAACGCTGACTCTTATTAAG 850
||||||||||||||||| || | | |||||||| |||||| |||||||||||||||||
Sbjct 721 TCACATGACAAAACTGCAAAGGCATGTCTTTGGGATATGAGATCGCTGACTCTTATTAAG 780
Query 851 ACTTACACCACTGTGGTGCCTGTAAATGCTGTCGCCATGTCTCCACTTCTCAACCATGTT 910
| ||| || || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 781 AGTTATACAACAGTGGTGCCTGTAAATGCTGTTGCCATGTCTCCACTTCTCAACCATGTT 840
Query 911 GTGCTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGGAAG 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GTGCTTGGAGGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGGAAG 900
Query 971 TTTGAAGCTAAGTTTTACGACACGATTCTGCAAGAGGAAATTGGTGGCGTGAAAGGTCAT 1030
|||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||
Sbjct 901 TTTGAAGCTAAGTTTTACGACACGATTCTGGAAGAGGAAATAGGTGGTGTGAAAGGTCAT 960
Query 1031 TTTGGACCTATTAATGCTTTGGCATTCAGTCCTGATGGGAAGAGTTTCTCTAGTGGAGGT 1090
||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 961 TTTGGACCTATAAATGCGTTGGCATTCAATCCTGATGGGAAGAGTTTCTCTAGTGGAGGT 1020
Query 1091 GAAGACGGCTACGTGAGACTGCATCATTTTGACTCCAATTACTTCAACATCAAGATTTAG 1150
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GAAGACGGCTACGTGAGGCTGCATCATTTTGACTCCAATTACTTCAACATCAAGATTTAG 1080
> Ahg497405 jgi|Araly1|497405|fgenesh2_kg.355__1__AT2G46280.2
Length=988
Score = 1487 bits (805), Expect = 0.0
Identities = 927/988 (94%), Gaps = 0/988 (0%)
Strand=Plus/Plus
Query 163 GATGAGGCCGATTTTGATGAAGGGACATGAACGTCCATTGACGTTCCTGAGGTACAACAG 222
||||| |||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1 GATGACGCCGATCTTGATGAAGGGACATGAACGTCCATTGACATTCCTCAGGTACAACAG 60
Query 223 AAATGGTGATCTGCTTTTCTCCTGCGCCAAAGACCACACTCCCACAGTCTGGTTTGCCGA 282
| |||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||| |
Sbjct 61 AGATGGCGATCTGCTTTTCTCCTGCGCCAAGGACCACACTCCCACCCTCTGGCTTGCCCA 120
Query 283 TAACGGCGAGCGTCTTGGCACTTACCGTGGCCACAGTGGTGCTGTTTGGTGCTGTGATAT 342
|||||||||||| ||||| |||||||||||||||| ||||||||||| |||||||||| |
Sbjct 121 TAACGGCGAGCGCCTTGGAACTTACCGTGGCCACAATGGTGCTGTTTCGTGCTGTGATGT 180
Query 343 CTCCAGAGACTCGTCTAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTGTGGGA 402
|||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 CTCCCGAGACTCGTCAAGATTGATCACTGGTAGTGCTGATCAGACTGCAAAGCTCTGGGA 240
Query 403 TGTGAAATCTGGCAAAGAATTGTTCACTTTCAAGTTTGGTGCCCCTGCAAGGTCTGTGGA 462
||| |||||||| ||| |||| ||||| ||||| |||||| | | || |||||||||||
Sbjct 241 TGTAAAATCTGGAAAACAATTATTCACATTCAATTTTGGTTCTTCGGCGAGGTCTGTGGA 300
Query 463 TTTCTCTGTTGGTGATCATCTTGCAGTGATTACCACTGATCACTTCGTGGGAACTTCCTC 522
|||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 301 TTTCTCTGTTGGAGATCATCTTGCAGTGATTACCACTGATCACTTCATGGGAGTTTCCTC 360
Query 523 TGCTATTCATGTCAAACGCATTGCAGAAGATCCCGAAGACCAGGTTGGTGATTCTGTGCT 582
|||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 361 TGCTATTCATGTGAAACGCATTGCGGAAGATCCCCAAGACCAGGTTGGTGATTCTGTGCT 420
Query 583 TGTCCTTCAAAGTCCTGATGGAAAGAAGAAGATCAATAGAGCTGTTTGGGGTCCCCTGAA 642
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 TGTCCTTCAAAGTCCTGACGGAAAGAAGAAGATCAATAGAGCTGTTTGGGGTCCTCTGAA 480
Query 643 CCAAACCATTGTTAGTGGTGGTGAAGATGCTGCTATCAGAATCTGGGATGCAGAGACTGG 702
|||||| ||||||||||||||||||||| ||| |||||||||||||||| | ||||||||
Sbjct 481 CCAAACTATTGTTAGTGGTGGTGAAGATACTGTTATCAGAATCTGGGATACCGAGACTGG 540
Query 703 AAAATTGCTTAAGCAATCAGATGAGGAAGTGGGTCACAAGGAGGCCATTACATCCCTCTG 762
||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 541 AAAATTGCTCAAGCAATCAGATGTGGAAGTGGGTCACAAGGAGGCCATTACATCGCTCTG 600
Query 763 CAAAGCAGCTGATGACTCTCACTTCCTTACAGGTTCACATGACAAAACTGCAAAGCTTTG 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CAAAGCAGCTGATGACTCTCACTTCCTTACAGGTTCACATGACAAAACTGCAAAGCTTTG 660
Query 823 GGACATGAGAACGCTGACTCTTATTAAGACTTACACCACTGTGGTGCCTGTAAATGCTGT 882
||| |||||| |||||||||||||||||| ||| || || ||||||||||||||||||||
Sbjct 661 GGATATGAGATCGCTGACTCTTATTAAGAGTTATACAACAGTGGTGCCTGTAAATGCTGT 720
Query 883 CGCCATGTCTCCACTTCTCAACCATGTTGTGCTTGGAGGTGGTCAAGATGCATCAGCTGT 942
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGCCATGTCTCCACTTCTCAACCATGTTGTGCTTGGAGGTGGTCAAGATGCATCAGCTGT 780
Query 943 GACTACCACTGATCATCGTGCTGGGAAGTTTGAAGCTAAGTTTTACGACACGATTCTGCA 1002
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 781 GACTACCACTGATCATCGTGCTGGGAAGTTTGAAGCTAAGTTTTACGACACGATTCTGGA 840
Query 1003 AGAGGAAATTGGTGGCGTGAAAGGTCATTTTGGACCTATTAATGCTTTGGCATTCAGTCC 1062
||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||| |||
Sbjct 841 AGAGGAAATAGGTGGTGTGAAAGGTCATTTTGGACCTATAAATGCGTTGGCATTCAATCC 900
Query 1063 TGATGGGAAGAGTTTCTCTAGTGGAGGTGAAGACGGCTACGTGAGACTGCATCATTTTGA 1122
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 901 TGATGGGAAGAGTTTCTCTAGTGGAGGTGAAGACGGCTACGTGAGGCTGCATCATTTTGA 960
Query 1123 CTCCAATTACTTCAACATCAAGATTTAG 1150
||||||||||||||||||||||||||||
Sbjct 961 CTCCAATTACTTCAACATCAAGATTTAG 988
> Ahg935594 jgi|Araly1|935594|scaffold_403582.1
Length=1119
Score = 1428 bits (773), Expect = 0.0
Identities = 936/1015 (92%), Gaps = 10/1015 (1%)
Strand=Plus/Plus
Query 146 CAAACCCTA-GAAA-CGAGGATGAGGCCGATTTTGATGAAGGGACATGAACGTCCATTGA 203
||||||||| |||| || |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 CAAACCCTAGGAAATTGAAGATGAGGCCGATCTTGATGAAGGGACATGAACGTCCATTGA 60
Query 204 CGTTCCTGAGGTACAACAGAA-ATGGTGATCTGCTTTTCTCCTGCGCCAAAGACCACACT 262
||||||| |||||||||| || |||| ||||| |||||||| |||||||| || ||||||
Sbjct 61 CGTTCCTCAGGTACAACA-AAGATGGCGATCTACTTTTCTCTTGCGCCAAGGATCACACT 119
Query 263 CCCACAGTCTGGTTTGCCGATAACGGCGAGCGTCTTGGCACTTACCGTGGCCACAGTGGT 322
||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |||
Sbjct 120 CCCACCCTCTGGTTTGCCGATAACGGCGAGCGCCTTGGCACATACCGTGGCCACAACGGT 179
Query 323 GCTGTTTGGTGCTGTGATATCTCCAGAGACTCGTCTAGATTGATCACTGGTAGTGCTGAT 382
|||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||
Sbjct 180 GCTGTTTGGTGCTGTGATGTCTCCCGAGACTCGTCAAGATTGATCACTGGTAGTGCTGAT 239
Query 383 CAGACTGCAAAGCTGTGGGATGTGAAATCTGGCAAAGAATTGTTCACTTTCAAGTTTGGT 442
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 240 CAGACTGCAAAGCTCTGGGATGTGAAATCTGGAAAAGAATTGTTCACATTCAAGTTTGGT 299
Query 443 GCCCCTGCAAGGTCTGTGGATTTCTCTGTTGGTGATCATCTTGCAGTGATTACCACTGAT 502
||||| | ||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 300 TCCCCTACGAGGTCTGTGGATTTCGCTGTTGGAGATCATCTTGCAGTGATTACCACTGAT 359
Query 503 CACTTCGTGGGAAC-T-TCCTCTGCTATTCATGTCAAACGCATTGCAGAAGATCCCGAAG 560
||||||| ||| | | | ||||||||||||| || || ||||| |||||||| ||||
Sbjct 360 TACTTCGT-GGACCGTAT-GGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAAG 417
Query 561 ACCAGGTTGGTGATTCTGTGCTTGTCCTTCAAAGTCCTGATGGAAAGAAGAAGATCAATA 620
|||||||| ||||||||||||||||||||||| | ||||| |||||||||| ||||||||
Sbjct 418 ACCAGGTTAGTGATTCTGTGCTTGTCCTTCAATGCCCTGACGGAAAGAAGAGGATCAATA 477
Query 621 GAGCTGTTTGGGGTCCCCTGAACCAAACCATTGTTAGTGGTGGTGAAGATGCTGCTATCA 680
|||||||||||||||||||||| ||||| |||||||||| |||||||||| ||| |||||
Sbjct 478 GAGCTGTTTGGGGTCCCCTGAATCAAACTATTGTTAGTGCTGGTGAAGATACTGTTATCA 537
Query 681 GAATCTGGGATGCAGAGACTGGAAAATTGCTTAA-GCAATCAGATGAGGAAGTGGGTCAC 739
||||||||||| | ||||||||||||||||| || | || || |||||||||||||||||
Sbjct 538 GAATCTGGGATACGGAGACTGGAAAATTGCTCAATG-AAACAAATGAGGAAGTGGGTCAC 596
Query 740 AAGGAGGCCATTACATCCCTCTGCAAAGCAGCTGATGACTCTCACTTCCTTACAGGTTCA 799
||| ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 597 AAGAAGGCCATTACATCGCTCTGTAAAGCAGCTGATGATTCTCACTTCCTTACAGGTTCA 656
Query 800 CATGACAAAACTGCAAAGCTTTGGGACATGAGAACGCTGACTCTTATTAAGACTTACACC 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CATGACAAAACTGCAAAGCTTTGGGACATGAGAACGCTGACTCTTATTAAGACTTACACC 716
Query 860 ACTGTGGTGCCTGTAAATGCTGTCGCCATGTCTCCACTTCTCAACCATGTTGTGCTTGGA 919
|||| |||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 717 ACTGGGGTGCCCGTAAATGCTGTCGCCATGTCTCCCCTTCTCAACCATGTTGTCCTTGGA 776
Query 920 GGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGGAAGTTTGAAGCT 979
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 777 GGTGGTCAAGATGCATCAGCTGTGACTACCACTGATCATCGTGCTGGAAAGTTTGAAGCT 836
Query 980 AAGTTTTACGACACGATTCTGCAAGAGGAAATTGGTGGCGTGAAAGGTCATTTTGGACCT 1039
|||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 837 AAGTTTTATGACAAGATTCTGCAAGAGGAAATTGGTGGTGTGAAAGGTCATTTTGGACCT 896
Query 1040 ATTAATGCTTTGGCATTCAGTCCTGATGGGAAGAGTTTCTCTAGTGGAGGTGAAGACGGC 1099
|| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 897 ATAAATGCTTTGGCATTCAATCCTGATGGGAAGAGTTTCTCCAGTGGAGGTGAAGACGGT 956
Query 1100 TACGTGAGACTGCATCATTTTGACTCCAATTACTTCAACATCAAGATTTAGATTC 1154
|||||||| |||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 957 TACGTGAGGCTGCATCATTTTGACTCCGACTACTTCAACATCAAGATTTAGATTC 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48187367088
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5