BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46300.1
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483780 jgi|Araly1|483780|fgenesh2_kg.4__2840__AT2G46300.1 1291 0.0
> Ahg483780 jgi|Araly1|483780|fgenesh2_kg.4__2840__AT2G46300.1
Length=963
Score = 1291 bits (699), Expect = 0.0
Identities = 810/862 (94%), Gaps = 14/862 (2%)
Strand=Plus/Plus
Query 36 TTTTGATCTTCCTTGATACGATTTATCAGGAGATCGTCAGAGA-G-GTGAATAATTAAGA 93
||||||||||| ||||||||||||||| ||||||||||||||| | ||||| |||| |
Sbjct 1 TTTTGATCTTCTTTGATACGATTTATCTGGAGATCGTCAGAGAGGTGTGAAGAATT---A 57
Query 94 GAAAAAAGATGGCAGATTATCAGATG-AACCCGGTTCTTCAAAAGCCACCAGGTTACAGA 152
|||||| |||||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 58 -AAAAAA-ATGGCAGATTATCAGATGAAACCC-GTTCTTCAAAAGCCACCAGGTTATAGA 114
Query 153 GATCCAAACATGtcctctcctcctcctcctccacctccCAT-TCAACAACAACCTATGAG 211
|||||||||||||| |||||||||||||| || |||||||| || |||||||||||||||
Sbjct 115 GATCCAAACATGTCGTCTCCTCCTCCTCCCCCTCCTCCCATGTC-ACAACAACCTATGAG 173
Query 212 AAAAGCCGTCCCTATGCCTACTTCTTACCGACCAAAGAAAAAACGTAGAAGCTGTTGTCG 271
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 174 AAAAGCCGTCCCTATGCCTACTTCTTACCGACCAAAGAAAAAACGCAGAAGCTGTTGTCG 233
Query 272 TTTCTGTTGCTGTTGCATCTGCATTACTCTTGTTCTCTTCATCTTCCTCCTCTTGGTCGG 331
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 234 TTTTTGTTGCTGTTGCATCTGCATTACTCTTGTCCTCTTCATCTTCCTCCTCTTGGTCGG 293
Query 332 AACAGCTGTTTTCTACCTCTGGTTCGATCCTAAGCTTCCCACTTTCAGCCTCGCTTCCTT 391
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 294 AACAGCTGTTTTCTACCTCTGGTTCGATCCTAAGCTTCCTACTTTCAGCCTCGCTTCCTT 353
Query 392 CCGTCTCGACGGCTTCAAACTCGCCGACGATCCCGACGGCGCGTCTCTCTCCGCCACCGC 451
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CCGTCTCGACGGATTCAAACTCGCCGACGATCCCGACGGCGCGTCTCTCTCCGCCACCGC 413
Query 452 CGTTGCCCGCGTTGAGATGAAGAATCCGAACTCGAAACTCGTTTTTTACTACGGAAACAC 511
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 414 CGTTGCCCGCGTTGAGATGAAGAATCCCAACTCGAAACTCGTCTTTTACTACGGAAACAC 473
Query 512 TGCCGTTGATTTGAGCGTTGGTTCGGGAAACGATGAGACCGGGATGGGAGAGACGACGAT 571
||||| || ||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct 474 CGCCGTGGAAATGAGCGTTGGTTCAGGAAACGACGAGACCGGGATGGGAGAGACGACGGT 533
Query 572 GAATGGATTCCGACAAGGTCCCAAAAACTCGACGAGCGTGAAAGTGGAGACGACGGTGAA 631
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 534 GAATGGATTCCGACAAGGCCCCAAGAATTCGACGAGCGTGAAAGTGGAGACGACGGTGAA 593
Query 632 GAATC-AGCTCGTGGAGAGAGGATTGGCTAAGAGACTCGCTGCGAAATTTCAGAGCAAAG 690
||| | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 594 GAA-CGAGCTCGTGGAGAGAGGACTGGCTAAGAGACTCGCTGCGAAATTTCAAAGCAAAG 652
Query 691 ATTTGGTCATTAACGTTGTTGCCAAGACTAAAGTTGGATTAGGTGTCGGCGGTATTAAGA 750
||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 653 ATTTGGTAATTAATGTTGTTGCAAAGACTAAAGTTGGATTAGGTGTCGGCGGAATTAAGA 712
Query 751 TCGGAATGCTCGCCGTTAATTTGAGATGCGGTGGCGTTAGCTTGAACAAGCTTGATACTG 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TCGGAATGCTCGCCGTTAATTTGAGATGCGGTGGCGTTAGCTTGAACAAGCTTGATACTG 772
Query 811 ATTCACCTAAATGCATTCTCAATACACTCAAATGGGTAACTATACAGTAACAAG-ACGGA 869
|||||||| |||||| |||||||||||||||||| ||| |||||||||| || |||||
Sbjct 773 ATTCACCTCAATGCACCCTCAATACACTCAAATGGTTAAATATACAGTAATGAGGACGGA 832
Query 870 AGGATTCGAGGATTTGGAAAAA 891
|||||| |||||||||||||||
Sbjct 833 AGGATTTGAGGATTTGGAAAAA 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43688862882
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5