BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46310.1
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483781 jgi|Araly1|483781|fgenesh2_kg.4__2841__AT2G46310.1 1672 0.0
> Ahg483781 jgi|Araly1|483781|fgenesh2_kg.4__2841__AT2G46310.1
Length=1220
Score = 1672 bits (905), Expect = 0.0
Identities = 1128/1233 (91%), Gaps = 25/1233 (2%)
Strand=Plus/Plus
Query 104 AAAGAGAAATGAAAAGCCGAGTGAGAAAATCCAAGTACACGGTTCACCGGAAAATCACAT 163
||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||| |
Sbjct 1 AAAGAGAAATGAAAAGCCGAGTGAGAAAAGCTAAGTACACGGTTCACCGGAAAACCACCT 60
Query 164 CCACACCGTTCGACGGTTTCCCGAAGATTGTCAAAATCATAGTCACTGACCCATGCGCTA 223
|| ||||||||||||||||| ||| |||| |||||||| |||||||||||||| ||||
Sbjct 61 CCGTTCCGTTCGACGGTTTCCCAAAGGTTGTGAAAATCATCGTCACTGACCCATGTGCTA 120
Query 224 CTGATTCTTCCAGCGATGAGGAAAACGACAACAAATCTGTTGCTCCGAGGGTGAAACGTT 283
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 CTGATTCTTCCAGTGATGAGGAAAACGACAGCAAATCTGTTGCTCCGAGGGTGAAACGTT 180
Query 284 ATGTGGATGAGATCAGGTTCTGTGACGAAGATGACGAACCTAAACCGGCGAGGAAAGC-- 341
||||||| ||||| |||||| |||| | || || |||||||||||||||||||||||
Sbjct 181 ATGTGGAAGAGATTAGGTTCGGTGAATACGACGATGAACCTAAACCGGCGAGGAAAGCGA 240
Query 342 -GAAGAAAA-AGTCCCCGGCGGCTGCGGCGGAGAACGGTGGAGATTTGGTAAAGTCTGTG 399
||| |||| || || ||||||| |||| || ||||||||| |||||||| ||| |||||
Sbjct 241 GGAATAAAACAG-CCACGGCGGCGGCGGTGGTGAACGGTGGTGATTTGGTGAAGCCTGTG 299
Query 400 GTGAAGTATAGAGGAGTGAGACAACGACCTTGGGGAAAATTTGCGGCGGAGATTCGTGAT 459
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 300 GTGAAGTATAGAGGAGTTAGACAACGACCTTGGGGAAAGTTCGCGGCGGAGATTCGTGAT 359
Query 460 CCTTCGAGTCGTACTAGACTCTGGCTTGGGACTTTTGCGACGGCGGAGGAAGCTGCTATA 519
||||||||||||||| ||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 360 CCTTCGAGTCGTACTCGACTCTGGCTTGGAACTTTCGCCACGGCGGAGGAAGCTGCTATA 419
Query 520 GGTTACGATAGAGCCGCGATTCGAATCAAAGGTCATAACGCTCAGACGAATTTTCTCACT 579
|||||||| ||||||||||||||| ||||||| |||||||||||||||||||| ||||||
Sbjct 420 GGTTACGACAGAGCCGCGATTCGACTCAAAGGACATAACGCTCAGACGAATTTCCTCACT 479
Query 580 CCTCCTCCTAGTCCGACGACTGAGGTGTTACCGGAAACTCCGGTGATTGACCTTGAAACT 639
||||||||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||
Sbjct 480 CCTCCTCCTAGTCCGACGAGTGAGGTGTTGCCGGAAACACCGGTGATTGATCTTGAAACG 539
Query 640 GTCTCTGGTTGTGATTCGGCGAGGGAATCGCAAATCAGTCTGTGTTCTCCGACTTCTGTT 699
|||||||||||||||||||||||||| || |||||||| |||| ||||||||||||||||
Sbjct 540 GTCTCTGGTTGTGATTCGGCGAGGGACTCACAAATCAGCCTGTCTTCTCCGACTTCTGTT 599
Query 700 CTCCGGTTTAGTCACAACGACGAAACAGAGTACAGAACAGAGCCAACGGAAGAACAAAAT 759
|||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 600 CTCCGGTTTAATCACATCGACGAAACAGAGTACAGAACAGAGCCAAAGGAAGAACAAACT 659
Query 760 CCGTTTTTCTTGCCTGATTTGTTTCGCTCCGGAGATTATTTTTGGGATTCCGAAATTACC 819
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 660 CCGTTTTTCTTGCCTGATTTATTTCGCGCCGGAGATTATTTTTGGGATTCCGAAATTACC 719
Query 820 CCTGACCCTTTGTTTCTCGACGAATTCCACCAGTCCTTGTTACCAAACATCAACAACAAC 879
||||| ||||||||||| |||||| |||||||||| |||||| |||| | |||||||||
Sbjct 720 CCTGATCCTTTGTTTCTAGACGAAATCCACCAGTCGTTGTTA-CAAA-A-CAACAACAAG 776
Query 880 AACACAGTGTGTGATAAGGATACGAATCTGTCTGATAGTTTTCCGTTGGGAGTGATCGGA 939
||||| |||| |||||| || |||||||| ||||| ||||||||||||||||||||||||
Sbjct 777 AACACTGTGTCTGATAAAGAAACGAATCTCTCTGAGAGTTTTCCGTTGGGAGTGATCGGA 836
Query 940 GATTTCAGCTCATGGGATGTTGATGAGTTTTTCCAAGATCATTTGTTGGATAAGTAATTT 999
||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
Sbjct 837 GATTTCAGCTCATGGGACGTGGATGAGTTTTTCCAAGATCATTTGTTGGATAAGTAA-TA 895
Query 1000 GATGAGTTCTTCCCCAGAATTTTTCTGGGTTTC--TCTTTTTGGTTGTGTGAGTGAGATG 1057
|||| |||||||| ||||| ||||||||||||| | |||||||||||||||||||||||
Sbjct 896 GATG-GTTCTTCCTCAGAAATTTTCTGGGTTTCTTTTTTTTTGGTTGTGTGAGTGAGATG 954
Query 1058 AGTGGTTTGATGACAACGACGGGGATGAATCTTAGCCGTCCGTTTTCCATTTCGTGGACG 1117
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 955 AGTGGTTTGATGACAACGAC-GGGATGAATCTTAGCCGTCCGTTTTCCCTTTCGTGGACG 1013
Query 1118 GCTCCGATCAGCGGAAGAAGCGCAACGGAG--TTTTTATTTATCTGTTTGAGAA-TTTTA 1174
|||||||||||||||||||||||||||||| ||||||||||||| || ||||| |||||
Sbjct 1014 GCTCCGATCAGCGGAAGAAGCGCAACGGAGTTTTTTTATTTATCTATTGGAGAATTTTTA 1073
Query 1175 TAATTTAATTTGCGAGTAAATATAGTAATTAGTGTTAAGATTGTGAGAGTTTAAGTTAAT 1234
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1074 -AATTTAATTTGCGAGTAAATATAGTAATTAGTGTTAAGATTGTGAGAGTTTAAATTA-T 1131
Query 1235 TAGGGAGGGGTTTTGAATATTGGGGATTTTGGGAGGTTTTTGTT-T--GGTTTCTCTCCA 1291
||||| ||| |||||||| | ||||||||||||||||||||||| | |||||||||||
Sbjct 1132 TAGGG-GGG-TTTTGAAT-T-GGGGATTTTGGGAGGTTTTTGTTGTTTGGTTTCTCTCCG 1187
Query 1292 AGTCTGTCACTATGCAAGGAAGCAGTATAAAGA 1324
|||||||||||||||||||| |||||||| |||
Sbjct 1188 AGTCTGTCACTATGCAAGGACGCAGTATATAGA 1220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50703479610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5